MetaQuery: quantitative analysis of the human gut microbiome

Results

Estimated gene abundances and results from statistical analyses

Job details:

Submission date: 2020-12-15 22:32:31 PST
Job id & description: 2319, test
Query type: protein
Count queries & homologs: 1, 9
Min % identity & max e-value: 30%, 1e-5
Min % query & target coverage: 70%, 70%

Click here to download results

Table of contents:


Gut microbiome genes homologous to your query gene:

query_id target_id status kegg eggnog phylum genus query_cov target_cov percent_identity
test11854472CompleteK01590COG0076unknownunknown72.293.1241.93
test11816416CompleteK01590COG0076ProteobacteriaEnterobacter71.9991.8837.78
test11410565CompleteK01590COG0076ProteobacteriaOxalobacter74.4887.1231.76
test11503476CompleteK01590COG0076unknownunknown73.0387.9534.32
test11827390CompleteK01590COG0076unknownunknown73.2496.5932.35
test11812361CompleteK01590COG0076unknownunknown74.2797.6432.38
test11775685CompleteK01590COG0076unknownunknown73.8696.1132.72
test11554845CompleteK01590COG0076unknownunknown71.7887.7833.97
test11775349CompleteK01590COG0076unknownunknown73.8696.1132.72
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The abundance of your query across gut microbiome samples:




The prevalence of your query across gut microbiome samples:




Taxonomic groups correlated with your query gene:

tax_level tax_name spearman_rho pvalue qvalue
speciesMethanobrevibacter_smithii0.3169.18e-453.85e-42
phylumEuryarchaeota0.3152.37e-443.85e-42
genusMethanobrevibacter0.3152.45e-443.85e-42
classMethanobacteria0.3131.01e-437.95e-42
orderMethanobacteriales0.3131.01e-437.95e-42
familyMethanobacteriaceae0.3131.01e-437.95e-42
speciesEnterobacter_aerogenes0.2923.59e-382.42e-36
genusOxalobacter0.2571.37e-296.89e-28
speciesOxalobacter_formigenes0.2571.37e-296.89e-28
familyOxalobacteraceae0.2571.46e-296.89e-28
speciesMethanobrevibacter_unclassified0.2472.07e-278.88e-26
speciesButyrivibrio_crossotus0.236.46e-242.54e-22
speciesEggerthella_unclassified-0.2282.14e-237.77e-22
genusEggerthella-0.2264.17e-231.41e-21
speciesAlistipes_senegalensis0.2148.39e-212.59e-19
genusButyrivibrio0.2149.24e-212.59e-19
speciesSubdoligranulum_unclassified0.2149.34e-212.59e-19
genusMorganella0.2131.2e-202.98e-19
speciesMorganella_morganii0.2131.2e-202.98e-19
speciesRuminococcus_champanellensis0.2113.27e-207.72e-19
speciesOlsenella_unclassified0.213.63e-208.16e-19
genusSubdoligranulum0.214.29e-209.2e-19
genusDesulfovibrio0.2062.3e-194.72e-18
speciesEubacterium_biforme0.2052.91e-195.72e-18
speciesRuminococcus_gnavus-0.1985.5e-181.04e-16
genusOlsenella0.1951.65e-173e-16
speciesDesulfovibrio_piger0.1951.92e-173.36e-16
speciesEubacterium_siraeum0.1942.28e-173.84e-16
speciesAnaerotruncus_unclassified0.1925.36e-178.72e-16
genusMethanosphaera0.1916.73e-171.02e-15
speciesMethanosphaera_stadtmanae0.1916.73e-171.02e-15
speciesClostridium_bolteae-0.1771.31e-141.93e-13
speciesParaprevotella_unclassified0.1752.97e-144.25e-13
genusParaprevotella0.1735.75e-147.98e-13
speciesClostridium_citroniae-0.1726.8e-149.1e-13
speciesParaprevotella_xylaniphila0.1726.94e-149.1e-13
speciesParaprevotella_clara0.171.34e-131.71e-12
genusPhascolarctobacterium0.171.41e-131.71e-12
speciesPhascolarctobacterium_succinatutens0.171.41e-131.71e-12
speciesCoprococcus_catus0.1691.88e-132.22e-12
speciesBifidobacterium_adolescentis0.1673.79e-134.36e-12
familyBacteroidaceae-0.1674e-134.39e-12
genusBacteroides-0.1674e-134.39e-12
familyAcidaminococcaceae0.1631.26e-121.35e-11
genusCatenibacterium0.1622.08e-122.13e-11
speciesCatenibacterium_mitsuokai0.1622.08e-122.13e-11
genusMitsuokella0.1594.18e-124.12e-11
speciesMitsuokella_unclassified0.1594.19e-124.12e-11
familyPrevotellaceae0.1577.89e-127.6e-11
speciesEggerthella_lenta-0.1551.61e-111.52e-10
genusFlavonifractor-0.1542.1e-111.91e-10
speciesFlavonifractor_plautii-0.1542.1e-111.91e-10
speciesAnaerotruncus_colihominis-0.1542.22e-111.98e-10
speciesBacteroides_pectinophilus0.1524.34e-113.79e-10
speciesCoprobacillus_unclassified-0.1514.78e-114.1e-10
genusCoprococcus0.1515.74e-114.84e-10
speciesClostridium_symbiosum-0.1499.93e-118.22e-10
genusCoprobacillus-0.1462.06e-101.68e-09
genusErysipelotrichaceae_noname0.1443.87e-103.1e-09
speciesPrevotella_copri0.1382.06e-091.62e-08
speciesDesulfovibrio_desulfuricans0.1382.17e-091.67e-08
phylumBacteroidetes-0.1382.26e-091.67e-08
classBacteroidia-0.1382.27e-091.67e-08
orderBacteroidales-0.1382.27e-091.67e-08
familyRuminococcaceae0.1372.64e-091.92e-08
speciesCoprococcus_sp_ART55_10.1355.07e-093.63e-08
classClostridia0.1345.9e-094.1e-08
orderClostridiales0.1345.9e-094.1e-08
speciesLachnospiraceae_bacterium_1_4_56FAA-0.1336.89e-094.71e-08
speciesClostridium_asparagiforme-0.1338.34e-095.62e-08
phylumFirmicutes0.1321.01e-086.71e-08
speciesDorea_longicatena0.1311.29e-088.46e-08
speciesBacteroides_ovatus-0.1282.68e-081.71e-07
genusCoprobacter0.1282.71e-081.71e-07
speciesCoprobacter_fastidiosus0.1282.71e-081.71e-07
speciesCoprococcus_eutactus0.1282.81e-081.75e-07
classErysipelotrichia0.1273.42e-082.04e-07
orderErysipelotrichales0.1273.42e-082.04e-07
familyErysipelotrichaceae0.1273.42e-082.04e-07
genusBarnesiella0.1273.99e-082.33e-07
speciesBarnesiella_intestinihominis0.1273.99e-082.33e-07
phylumVerrucomicrobia0.1255.54e-083.01e-07
classVerrucomicrobiae0.1255.54e-083.01e-07
orderVerrucomicrobiales0.1255.54e-083.01e-07
familyVerrucomicrobiaceae0.1255.54e-083.01e-07
genusAkkermansia0.1255.54e-083.01e-07
speciesAkkermansia_muciniphila0.1255.54e-083.01e-07
genusEnterobacter0.1231.06e-075.69e-07
genusPrevotella0.1211.5e-077.96e-07
speciesBacteroides_thetaiotaomicron-0.1211.67e-078.76e-07
speciesCollinsella_aerofaciens0.121.85e-079.6e-07
genusAnaerotruncus0.1192.72e-071.4e-06
speciesClostridium_ramosum-0.1183.15e-071.6e-06
speciesClostridium_sp_L2_500.1164.62e-072.32e-06
speciesLactobacillus_ruminis0.1164.69e-072.33e-06
speciesBacteroides_fragilis-0.1147.79e-073.83e-06
genusCollinsella0.1139.56e-074.65e-06
speciesEubacterium_sp_3_1_31-0.1131.02e-064.91e-06
speciesMitsuokella_multacida0.111.88e-068.96e-06
speciesClostridium_hathewayi-0.1083.14e-061.48e-05
genusGordonibacter-0.1064.27e-061.98e-05
speciesGordonibacter_pamelaeae-0.1064.27e-061.98e-05
genusPseudoflavonifractor0.1055.1e-062.31e-05
speciesPseudoflavonifractor_capillosus0.1055.1e-062.31e-05
speciesSutterella_wadsworthensis0.1055.89e-062.65e-05
speciesPeptostreptococcaceae_noname_unclassified0.1046.82e-063.04e-05
speciesAcidaminococcus_fermentans0.1038.16e-063.6e-05
speciesClostridiales_bacterium_1_7_47FAA-0.1029.23e-064.03e-05
speciesDialister_invisus-0.0991.81e-057.84e-05
genusSutterella0.0982.32e-059.95e-05
orderAeromonadales0.0972.43e-050.000103
speciesBacteroides_eggerthii0.0972.51e-050.000106
speciesBifidobacterium_angulatum0.0972.85e-050.000119
familyLachnospiraceae0.0962.94e-050.000122
speciesKlebsiella_oxytoca0.0963.03e-050.000124
genusHoldemania-0.0944.81e-050.000196
speciesCoprococcus_comes0.0935.68e-050.000229
phylumViruses_noname0.0926.28e-050.000249
classViruses_noname0.0926.28e-050.000249
genusDorea0.0926.39e-050.00025
genusClostridiaceae_noname-0.0926.46e-050.00025
speciesClostridiaceae_bacterium_JC118-0.0926.46e-050.00025
speciesEubacterium_dolichum-0.0926.53e-050.000251
speciesBacteroides_barnesiae0.0927.27e-050.000276
genusOdoribacter0.0927.31e-050.000276
speciesLachnospiraceae_bacterium_7_1_58FAA0.0917.66e-050.000287
speciesLachnospiraceae_bacterium_5_1_57FAA-0.090.0001030.000383
genusSutterellaceae_unclassified0.0870.0001620.000597
speciesLachnospiraceae_bacterium_2_1_58FAA-0.0850.000220.000805
speciesClostridium_clostridioforme-0.0850.0002240.000813
speciesCitrobacter_unclassified0.0850.0002390.000861
genusButyricimonas0.0840.0002620.00093
speciesButyricimonas_synergistica0.0840.0002620.00093
speciesErysipelotrichaceae_bacterium_5_2_54FAA-0.0840.0002840.001
speciesOdoribacter_splanchnicus0.0840.0002860.001
speciesMegamonas_rupellensis-0.0840.0002990.00103
genusSuccinatimonas0.0830.0003010.00103
speciesSuccinatimonas_hippei0.0830.0003010.00103
speciesEubacterium_cylindroides0.0830.0003030.00103
genusCitrobacter0.0830.0003070.00104
genusMegamonas-0.0830.0003310.00111
speciesBacteroides_xylanisolvens-0.0830.000350.00116
speciesMegamonas_unclassified-0.0830.0003550.00117
speciesCitrobacter_freundii0.0820.0003650.0012
speciesLactococcus_garvieae0.0820.000370.0012
speciesEnterobacter_cloacae0.0810.0004230.00137
familySuccinivibrionaceae0.0810.0004810.00154
orderCaudovirales0.080.0005670.00181
speciesLachnospiraceae_bacterium_3_1_46FAA0.0790.0005830.00185
familyBacteroidales_noname0.0780.0007750.00241
genusBacteroidales_noname0.0780.0007750.00241
speciesBacteroidales_bacterium_ph80.0780.0007750.00241
speciesDialister_succinatiphilus0.0770.0007970.00246
speciesMegasphaera_elsdenii0.0740.001270.00389
speciesBacteroides_salanitronis0.0740.001320.00399
speciesBlautia_producta-0.0740.001320.00399
speciesLachnospiraceae_bacterium_5_1_63FAA-0.0740.001440.00433
speciesParabacteroides_goldsteinii0.0740.001470.00439
speciesBifidobacterium_pseudocatenulatum-0.0730.001610.00478
speciesEubacterium_eligens0.0730.001680.00496
speciesErysipelotrichaceae_bacterium_3_1_53-0.0720.001710.00501
speciesBlautia_hydrogenotrophica-0.0720.001930.00562
familySiphoviridae0.070.002490.00721
speciesMegamonas_hypermegale-0.0690.002730.00786
genusRuminococcaceae_noname0.0680.003050.00862
speciesRuminococcaceae_bacterium_D160.0680.003050.00862
speciesRuminococcus_lactaris0.0680.003050.00862
familyViruses_noname0.0680.003350.00936
genusViruses_noname0.0680.003350.00936
genusProteus0.0670.003640.0101
genusAcidaminococcus0.0650.004670.0129
genusBlautia-0.0640.005540.0152
speciesBacteroides_stercoris-0.0640.005580.0152
speciesRoseburia_unclassified0.0630.006050.0164
speciesRuminococcus_bromii0.0630.006790.0183
speciesLachnospiraceae_bacterium_9_1_43BFAA-0.0620.007550.0202
speciesBacteroides_oleiciplenus-0.0610.008070.0215
speciesLachnospiraceae_bacterium_2_1_46FAA-0.0610.008090.0215
speciesKlebsiella_sp_MS_92_30.0610.008350.022
speciesWeissella_cibaria0.0610.008390.022
familyVeillonellaceae-0.0610.008760.0228
genusDialister-0.060.00960.0249
speciesLachnospiraceae_bacterium_8_1_57FAA0.0580.01210.0312
speciesWeissella_confusa0.0580.01240.0318
speciesBacteroides_faecis0.0560.01540.0393
speciesEnterobacteria_phage_HK5440.0560.01630.0412
genusAdlercreutzia-0.0550.01640.0412
speciesAdlercreutzia_equolifaciens-0.0550.01640.0412
speciesStreptococcus_pasteurianus-0.0550.01770.0442
speciesBacteroides_nordii-0.0550.01830.0455
speciesParabacteroides_unclassified0.0540.01850.0457
speciesAlistipes_shahii0.0540.01880.0462
speciesBacteroides_sp_2_1_22-0.0540.02040.0499
speciesEggerthella_sp_1_3_56FAA-0.0530.02240.0545
speciesBacteroides_cellulosilyticus0.0530.02280.0552
classEpsilonproteobacteria0.0520.02360.0565
orderCampylobacterales0.0520.02360.0565
speciesBacteroides_uniformis-0.0520.02460.0586
speciesEubacterium_hallii0.0520.02470.0586
speciesRoseburia_intestinalis-0.0520.02490.0588
familyEnterococcaceae0.0520.02570.0604
speciesAnaerostipes_unclassified-0.0510.02610.061
speciesClostridium_nexile-0.0510.02710.063
speciesOscillibacter_sp_KLE_1728-0.0510.02750.0636
genusEnterococcus0.0510.02830.0652
speciesProteus_mirabilis0.0510.02870.0658
orderViruses_noname0.050.03050.0695
genusTunalikevirus0.050.03110.0706
speciesRoseburia_hominis0.0490.03290.0743
speciesC2likevirus_unclassified0.0490.03310.0744
genusWeissella0.0490.03380.0756
orderBifidobacteriales0.0490.03580.079
familyBifidobacteriaceae0.0490.03580.079
speciesStreptococcus_vestibularis-0.0490.03580.079
familyFusobacteriaceae-0.0480.03660.0798
speciesRuminococcus_callidus0.0480.03660.0798
genusBifidobacterium0.0480.03670.0798
speciesAcidaminococcus_intestini0.0480.03780.0818
genusMegasphaera0.0480.03870.0833
familyOscillospiraceae-0.0480.0390.0833
genusOscillibacter-0.0480.0390.0833
phylumFusobacteria-0.0480.03970.0837
classFusobacteriia-0.0480.03970.0837
orderFusobacteriales-0.0480.03970.0837
speciesMegamonas_funiformis-0.0470.04040.0848
speciesButyrivibrio_unclassified0.0470.04170.0871
speciesEubacterium_ramulus0.0470.04260.0886
genusC2likevirus0.0470.04420.0915
speciesPorphyromonas_asaccharolytica0.0460.04660.096
familyMyoviridae0.0460.04680.096
speciesRuminococcus_obeum0.0460.0480.0981
speciesHaemophilus_paraphrohaemolyticus-0.0450.05050.103
familyCampylobacteraceae0.0450.05070.103
genusFusobacterium-0.0450.05170.104
genusPorphyromonas0.0450.05210.105
speciesBacteroides_vulgatus-0.0450.05290.106
speciesClostridium_spiroforme-0.0450.05430.108
speciesEscherichia_unclassified0.0440.0580.115
speciesStreptococcus_australis-0.0440.05840.115
speciesBacteroides_sp_1_1_60.0440.05850.115
familyPeptostreptococcaceae0.0430.06120.12
speciesClostridium_sp_KLE_1755-0.0430.06150.12
speciesParabacteroides_sp_D130.0430.06530.127
familyPodoviridae0.0430.06610.128
familySutterellaceae0.0420.06690.129
phylumActinobacteria0.0420.06760.129
classActinobacteria0.0420.06760.129
speciesBifidobacterium_bifidum0.0420.07060.133
genusBurkholderiales_noname-0.0420.07070.133
speciesBurkholderiales_bacterium_1_1_47-0.0420.07070.133
speciesHoldemania_unclassified-0.0420.07280.136
speciesLachnospiraceae_bacterium_6_1_63FAA-0.0410.07280.136
speciesMegasphaera_unclassified0.0410.0730.136
familyBurkholderiales_noname-0.0410.0740.138
genusLactococcus0.0410.07610.141
genusAcidaminococcaceae_unclassified0.0410.07720.142
speciesKlebsiella_phage_KP360.0410.07820.144
genusPeptostreptococcaceae_noname0.040.08060.147
familyClostridiales_noname-0.040.08080.147
speciesOdoribacter_unclassified0.040.08120.147
speciesHoldemania_filiformis-0.040.08210.148
speciesBifidobacterium_animalis0.040.08680.156
speciesParabacteroides_merdae0.0390.0890.16
genusEubacterium0.0390.09030.161
familyEubacteriaceae0.0390.09120.162
speciesLachnospiraceae_bacterium_1_1_57FAA-0.0390.09180.163
speciesEubacterium_ventriosum0.0390.0940.166
speciesBacteroides_plebeius0.0390.09480.167
speciesFusobacterium_varium-0.0390.09540.167
speciesPrevotella_stercorea0.0380.09940.174
familyClostridiaceae-0.0380.1020.178
speciesOscillibacter_sp_KLE_1745-0.0380.1030.179
genusStreptococcus-0.0380.1040.179
genusClostridium-0.0380.1040.179
orderCoriobacteriales0.0380.1050.18
familyCoriobacteriaceae0.0380.1050.18
speciesHoldemania_sp_AP2-0.0370.110.187
genusCampylobacter0.0370.1120.19
speciesAlistipes_sp_AP11-0.0360.1150.194
speciesOscillibacter_unclassified-0.0360.1150.194
speciesLactobacillus_acidophilus-0.0360.1180.198
speciesLactobacillus_vaginalis0.0360.1230.204
speciesErysipelotrichaceae_bacterium_21_30.0360.1230.204
speciesBacteroides_coprophilus0.0360.1230.204
speciesBacteroides_fluxus-0.0350.1310.217
speciesErysipelotrichaceae_bacterium_6_1_45-0.0340.1360.224
speciesEubacterium_rectale0.0350.1360.224
speciesStreptococcus_salivarius-0.0340.1370.225
speciesEnterococcus_faecium0.0340.1380.225
speciesAlistipes_putredinis0.0340.1390.226
familyStreptococcaceae-0.0340.1420.23
speciesBilophila_unclassified-0.0340.1420.23
speciesSubdoligranulum_sp_4_3_54A2FAA-0.0330.150.242
genusRoseburia-0.0330.1570.252
familyLeuconostocaceae0.0330.1580.253
speciesStreptococcus_anginosus-0.0320.1630.26
speciesSlackia_piriformis-0.0320.1640.261
genusBilophila-0.0320.1670.265
speciesPrevotella_buccae-0.0320.1710.27
familyBacillales_noname-0.0320.1720.27
genusGemella-0.0320.1720.27
speciesDorea_formicigenerans0.0310.1810.283
speciesRuminococcus_torques-0.0310.1860.29
orderBacillales-0.030.1890.293
genusLactobacillus0.030.1910.296
speciesBacteroides_clarus0.030.1990.307
classDeltaproteobacteria0.0290.2060.315
orderDesulfovibrionales0.0290.2060.315
familyDesulfovibrionaceae0.0290.2060.315
genusSiphoviridae_noname0.0290.2090.318
speciesPeptostreptococcus_stomatis0.0290.210.319
speciesAlistipes_unclassified0.0290.2110.319
familyLactobacillaceae0.0290.2120.32
speciesTuricibacter_sanguinis0.0280.2270.341
speciesRuminococcus_sp_5_1_39BFAA-0.0280.230.345
speciesAlistipes_indistinctus0.0270.2360.353
speciesOdoribacter_laneus0.0270.2450.365
speciesStreptococcus_phage_Sfi210.0270.2480.368
speciesStreptococcus_gordonii-0.0260.2520.373
speciesLactobacillus_mucosae0.0260.2580.381
speciesParabacteroides_sp_20_30.0250.2710.398
speciesStreptococcus_lutetiensis-0.0250.2730.4
speciesLactococcus_phage_P6800.0250.2740.4
speciesLactococcus_lactis0.0250.2790.406
genusRuminococcus0.0250.280.407
genusPeptostreptococcus0.0250.2890.418
speciesClostridium_bartlettii-0.0240.2930.423
genusFaecalibacterium0.0240.2970.425
speciesParabacteroides_johnsonii0.0240.2970.425
speciesFaecalibacterium_prausnitzii0.0240.2970.425
speciesLactobacillus_oris0.0240.3040.433
speciesHaemophilus_sputorum-0.0230.3190.454
speciesBacteroides_dorei0.0230.320.454
speciesFusobacterium_ulcerans-0.0230.3220.455
speciesPrevotella_bivia-0.0230.3230.455
genusSolobacterium-0.0220.3320.465
speciesSolobacterium_moorei-0.0220.3320.465
speciesSutterella_parvirubra-0.0220.3350.468
speciesBifidobacterium_breve-0.0210.3530.491
genusLambdalikevirus0.0210.3580.497
speciesVeillonella_parvula-0.0210.3630.502
speciesErysipelotrichaceae_bacterium_2_2_44A-0.0210.3750.518
speciesEnterococcus_faecalis0.020.3790.521
speciesStreptococcus_mitis_oralis_pneumoniae-0.020.380.521
speciesCollinsella_intestinalis-0.020.3820.523
speciesMegasphaera_micronuciformis0.020.3890.531
speciesEubacterium_limosum0.020.3910.532
speciesLeuconostoc_lactis0.0190.4150.561
familyPorphyromonadaceae0.0190.4160.561
genusPantoea0.0190.4170.561
speciesPantoea_unclassified0.0190.4170.561
genusButyricicoccus-0.0190.4210.562
speciesButyricicoccus_pullicaecorum-0.0190.4210.562
familyStaphylococcaceae0.0190.4230.562
speciesAlistipes_sp_HGB50.0190.4230.562
genusSlackia-0.0180.4250.563
speciesPeptostreptococcus_anaerobius-0.0180.430.568
familyMicrococcaceae-0.0180.4310.568
genusCoriobacteriaceae_noname0.0180.4320.568
genusRothia-0.0180.4360.572
speciesBacteroides_finegoldii-0.0170.4510.59
speciesPorphyromonas_uenonis0.0170.4540.592
genusMyoviridae_noname0.0170.4570.594
genusClostridiales_noname-0.0170.4610.596
orderBurkholderiales0.0170.4620.596
speciesStreptococcus_thermophilus0.0170.4620.596
speciesStreptococcus_infantarius0.0170.4680.602
speciesEscherichia_coli-0.0160.4760.611
speciesBacteroides_intestinalis0.0160.4810.615
speciesParvimonas_unclassified-0.0160.4850.617
speciesLactobacillus_casei_paracasei-0.0160.4850.617
speciesKlebsiella_pneumoniae0.0160.4870.618
genusParvimonas-0.0160.4880.618
classBetaproteobacteria0.0160.4970.627
speciesKlebsiella_unclassified-0.0160.5020.631
speciesRuminococcus_sp_JC304-0.0150.5030.631
speciesLactobacillus_sanfranciscensis-0.0150.5060.633
speciesCoriobacteriaceae_bacterium_phI0.0150.5070.633
genusParabacteroides-0.0150.5180.645
speciesRothia_mucilaginosa-0.0150.520.646
speciesLactobacillus_reuteri0.0150.5280.654
genusAggregatibacter-0.0140.5580.687
phylumProteobacteria0.0140.5590.687
speciesAnaerostipes_hadrus0.0140.5590.687
genusVeillonella-0.0130.5610.688
genusLachnospiraceae_noname-0.0130.5720.699
speciesVeillonella_atypica-0.0130.5760.703
classBacilli-0.0130.5790.703
speciesStreptococcus_sanguinis-0.0130.5790.703
speciesPropionibacterium_freudenreichii0.0130.5840.704
orderLactobacillales-0.0130.5850.704
speciesBifidobacterium_catenulatum0.0130.5850.704
speciesStreptococcus_parasanguinis-0.0130.5880.705
orderEnterobacteriales0.0120.590.705
familyEnterobacteriaceae0.0120.590.705
speciesBilophila_wadsworthia-0.0120.5940.708
speciesBacteroides_massiliensis0.0120.6010.715
speciesClostridium_sp_ATCC_BAA_442-0.0120.6070.72
genusActinomyces0.0120.6110.723
familyClostridiales_Family_XI_Incertae_Sedis-0.0120.6190.724
phylumSynergistetes0.0110.620.724
classSynergistia0.0110.620.724
orderSynergistales0.0110.620.724
familySynergistaceae0.0110.620.724
speciesCollinsella_unclassified0.0110.6250.728
speciesLactobacillus_rhamnosus0.0110.6290.731
familyActinomycetaceae0.0110.6320.733
speciesCollinsella_tanakaei-0.0110.6450.746
speciesHaemophilus_parainfluenzae0.0110.6470.747
genusAnaerostipes-0.010.6590.759
speciesLactococcus_phage_jm2-0.010.6650.764
speciesLactococcus_phage_phi7-0.010.6730.769
speciesClostridium_leptum0.010.6730.769
speciesLactobacillus_crispatus0.010.6780.773
speciesLactococcus_phage_bIL67-0.0090.6830.777
genusTuricibacter0.0090.690.783
genusHaemophilus0.0090.6940.784
speciesBacteroides_coprocola0.0090.6940.784
orderPasteurellales0.0090.6980.784
familyPasteurellaceae0.0090.6980.784
genusPeptoniphilus-0.0090.7060.791
genusKlebsiella0.0090.7070.791
genusEscherichia-0.0090.710.792
speciesBacteroides_caccae0.0080.7190.8
speciesBifidobacterium_longum0.0080.720.8
speciesAggregatibacter_segnis0.0080.7220.8
speciesTuricibacter_unclassified0.0080.7250.801
classGammaproteobacteria0.0080.7270.801
speciesBacteroides_salyersiae0.0080.7280.801
speciesBifidobacterium_dentium0.0080.7320.803
speciesAlistipes_finegoldii-0.0080.7340.804
speciesCampylobacter_concisus-0.0080.740.809
speciesVeillonella_dispar-0.0080.7420.809
genusPropionibacterium-0.0070.7560.822
speciesDorea_unclassified0.0070.7580.822
speciesFusobacterium_mortiferum-0.0070.7620.825
familyPropionibacteriaceae-0.0070.7660.827
speciesRoseburia_inulinivorans-0.0060.7890.85
speciesLactobacillus_salivarius-0.0060.7990.859
speciesVeillonella_unclassified-0.0050.8210.881
speciesLactobacillus_plantarum0.0050.8380.897
speciesLactococcus_phage_936_sensu_lato-0.0050.8450.902
orderPseudomonadales-0.0040.8540.91
speciesLactobacillus_gasseri0.0040.8580.912
genusLeuconostoc0.0040.860.912
speciesGemella_morbillorum-0.0040.8640.914
speciesLachnospiraceae_bacterium_3_1_57FAA_CT10.0040.870.919
familyRikenellaceae-0.0040.8790.924
genusAlistipes-0.0040.8790.924
speciesFusobacterium_nucleatum0.0030.8830.926
speciesLactobacillus_amylovorus0.0030.8880.927
speciesClostridium_perfringens-0.0030.8880.927
genusStaphylococcus0.0030.8920.929
speciesBacteroides_sp_4_3_47FAA0.0030.8980.934
speciesStreptococcus_mutans0.0030.9030.937
classNegativicutes0.0030.9140.944
orderSelenomonadales0.0030.9140.944
orderActinomycetales0.0020.9190.945
speciesBacteroides_sp_3_1_19-0.0020.9190.945
speciesLactobacillus_delbrueckii0.0020.9220.946
speciesCoprobacillus_sp_D60.0020.9330.955
speciesLactobacillus_fermentum0.0020.9470.967
speciesAcidaminococcus_unclassified-0.0010.9550.973
speciesCoprobacillus_sp_29_10.0010.9590.973
speciesAlistipes_onderdonkii0.0010.9590.973
genusParasutterella-0.0010.9730.981
speciesParasutterella_excrementihominis-0.0010.9730.981
genusActinobacillus-0.0010.9750.981
speciesActinobacillus_unclassified-0.0010.9750.981
speciesParabacteroides_distasonis-0.0010.9820.986
genusPyramidobacter0.00.9890.989
speciesPyramidobacter_piscolens0.00.9890.989
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Association of query gene abundance with clinical phenotypes:

Boxplots:


Statistics:

pheno country case_n ctrl_n case_mean ctrl_mean pvalue rank percentile
ObesityDenmark1691230.004028497708150.002331984850810.0250523153418354311.6504
Ulcerative colitisSpain78660.000359193110990.00124381769130.081358426546629220.7561
Liver cirrhosisChina1201140.0004269670769230.0005839492599060.1953503008451927764.7553
Type II diabetesChina1831850.0004675333960610.0003603012985440.3586707925341788559.1064
Colorectal cancerAustria64350.000566525221120.001455522078580.4703677398061678856.8006
Rheumatoid arthritisChina127980.0005778868416670.001138679460990.5855228242021951765.0849
Type II diabetesSweden53920.0004742343248180.001251671610310.6521574283462025468.5879
Crohns diseaseSpain17660.001281507984960.00124381769130.7059034755372668888.7382
Type II diabetesDenmark752770.004727017275540.003344547742950.9193463441272896994.9585
Click on arrows to sort table data. Shift+click to sort by multiple columns.

Citation:

Nayfach S, Fischbach MA, Pollard KS. MetaQuery: a web server for rapid annotation and quantitative analysis of specific genes in the human gut microbiome. Bioinformatics 2015;31(14). doi:10.1093/bioinformatics/btv382