MetaQuery: quantitative analysis of the human gut microbiome

Results

Estimated gene abundances and results from statistical analyses

Job details:

Submission date: 2020-12-17 06:01:25 PST
Job id & description: 2320, erg
Query type: protein
Count queries & homologs: 1, 58
Min % identity & max e-value: 30%, 1e-5
Min % query & target coverage: 70%, 70%

Click here to download results

Table of contents:


Gut microbiome genes homologous to your query gene:

query_id target_id status kegg eggnog phylum genus query_cov target_cov percent_identity
erg680287CompleteK01745COG2986unknownunknown98.997.7146.04
erg710353Lack 5'-endK01745COG2986Proteobacteriaunknown99.4598.2144.36
erg748258CompleteK01745COG2986Proteobacteriaunknown99.4599.6344.32
erg698169CompleteK01745COG2986Proteobacteriaunknown96.1493.9646.98
erg743857CompleteK01745COG2986unknownunknown100.0100.044.85
erg752650CompleteK01745COG2986unknownunknown98.999.6343.12
erg700137CompleteK01745COG2986unknownunknown99.0897.3343.33
erg744771CompleteK01745COG2986unknownunknown97.9898.1842.3
erg743791CompleteK01745COG2986unknownunknown97.7998.3642.22
erg751704CompleteK01745COG2986unknownunknown97.7998.5344.05
erg563887CompleteK01745COG2986unknownunknown98.1688.8342.88
erg723955CompleteK01745COG2986unknownunknown99.6399.2842.57
erg721331CompleteK01745COG2986unknownunknown99.8299.4642.68
erg719888CompleteK01745COG2986ProteobacteriaEscherichia99.6399.141.92
erg731993CompleteK01745COG2986unknownunknown96.3296.0142.26
erg711709CompleteK01745COG2986unknownunknown94.8593.7343.98
erg946355CompleteK01745COG2986unknownunknown90.0799.642.74
erg734467CompleteK01745COG2986unknownunknown98.1697.6442.22
erg746530CompleteK01745COG2986unknownunknown98.3598.7241.73
erg717952Lack 5'-endK01745COG2986Proteobacteriaunknown97.7996.9443.04
erg729933CompleteK01745COG2986unknownunknown95.495.342.13
erg728895CompleteK01745COG2986unknownunknown95.495.343.45
erg741642CompleteK01745COG2986Proteobacteriaunknown97.7998.1842.67
erg774174CompleteK01745COG2986unknownunknown99.8299.4441.95
erg733418CompleteK01745COG2986unknownunknown95.0495.1142.29
erg1098122CompleteK01745COG2986unknownunknown84.9399.7943.62
erg957741CompleteK01745COG2986FusobacteriaFusobacterium95.2298.3936.03
erg1482988CompleteK01745COG2986unknownunknown75.92100.044.15
erg1257654Lack 3'-endK01745COG2986unknownunknown72.2488.3946.25
erg880964CompleteK01745COG2986unknownunknown95.0495.3138.92
erg889586CompleteK01745COG2986unknownunknown95.0495.4938.73
erg911728CompleteK01745COG2986unknownunknown95.2297.4335.77
erg936819CompleteK01745COG2986FirmicutesClostridium95.5998.237.74
erg950734CompleteK01745COG2986unknownunknown95.5998.7937.16
erg951316CompleteK01745COG2986unknownunknown95.498.5936.08
erg903822CompleteK01745COG2986unknownunknown92.4694.0835.71
erg891165Lack 5'-endK01745COG2986FirmicutesClostridium95.2295.8836.15
erg910555CompleteK01745COG2986unknownunknown95.2297.2335.44
erg919916CompleteK01745COG2986unknownunknown94.8596.8236.73
erg481072CompleteK01745COG2986unknownunknown95.2275.733.85
erg749636Lack 5'-endK01745COG2986unknownunknown95.0490.3135.18
erg863994CompleteK01745COG2986unknownunknown95.0495.9331.99
erg1450637Lack 3'-endK01745COG2986unknownunknown80.8898.1137.56
erg922575CompleteK01745COG2986FirmicutesStreptococcus86.488.0736.02
erg738782CompleteK01745COG2986Proteobacteriaunknown98.999.0932.0
erg740618CompleteK01745COG2986Proteobacteriaunknown98.999.0931.82
erg740427CompleteK01745COG2986Proteobacteriaunknown98.999.0931.82
erg739747CompleteK01745COG2986unknownunknown97.9898.031.62
erg708464CompleteK01745COG2986unknownunknown94.8593.0232.31
erg708385CompleteK01745COG2986unknownunknown97.2495.3531.9
erg902917CompleteK01745COG2986unknownunknown95.496.4533.01
erg873182CompleteK01745COG2986ProteobacteriaCitrobacter91.1892.2235.01
erg1194310CompleteK01745COG2986Proteobacteriaunknown76.2992.7533.65
erg836346CompleteK01745COG2986Firmicutesunknown95.9695.9830.26
erg901123CompleteK01745COG2986unknownunknown95.497.0430.29
erg1441910Lack both endsK01745COG2986unknownunknown71.6993.434.09
erg890880CompleteK01745COG2986ProteobacteriaKlebsiella95.7796.2730.53
erg1782797Lack both endsK01745COG2986FirmicutesBlautia71.8896.3730.53
Click on arrows to sort table data. Shift+click to sort by multiple columns.

The abundance of your query across gut microbiome samples:




The prevalence of your query across gut microbiome samples:




Taxonomic groups correlated with your query gene:

tax_level tax_name spearman_rho pvalue qvalue
familyBurkholderiales_noname0.4492.87e-937.85e-91
genusBurkholderiales_noname0.4484.99e-937.85e-91
speciesBurkholderiales_bacterium_1_1_470.4484.99e-937.85e-91
genusParasutterella0.4242.02e-821.91e-80
speciesParasutterella_excrementihominis0.4242.02e-821.91e-80
orderBurkholderiales0.331.14e-488.97e-47
classBetaproteobacteria0.3261.68e-471.13e-45
familyRikenellaceae0.3177.11e-453.73e-43
genusAlistipes0.3177.11e-453.73e-43
familyPorphyromonadaceae0.3042.35e-411.11e-39
classDeltaproteobacteria0.2941.26e-384.57e-37
orderDesulfovibrionales0.2941.26e-384.57e-37
familyDesulfovibrionaceae0.2941.26e-384.57e-37
speciesBilophila_unclassified0.2884.3e-371.42e-35
genusBilophila0.2884.51e-371.42e-35
speciesOdoribacter_splanchnicus0.2836.76e-361.99e-34
genusOdoribacter0.2797.6e-352.11e-33
speciesAlistipes_putredinis0.2521.83e-284.77e-27
familySutterellaceae0.2521.92e-284.77e-27
genusParabacteroides0.2522.27e-285.36e-27
familyOscillospiraceae0.2431.47e-263.15e-25
genusOscillibacter0.2431.47e-263.15e-25
speciesBilophila_wadsworthia0.2391.1e-252.26e-24
speciesOscillibacter_unclassified0.2191.15e-212.26e-20
speciesAlistipes_shahii0.2163.25e-216.14e-20
familyBacteroidaceae0.2113.36e-205.87e-19
genusBacteroides0.2113.36e-205.87e-19
phylumBacteroidetes0.22.31e-183.63e-17
classBacteroidia0.22.31e-183.63e-17
orderBacteroidales0.22.31e-183.63e-17
speciesAlistipes_indistinctus0.1977.14e-181.09e-16
familyBacteroidales_noname0.1961.12e-171.55e-16
genusBacteroidales_noname0.1961.12e-171.55e-16
speciesBacteroidales_bacterium_ph80.1961.12e-171.55e-16
speciesAlistipes_onderdonkii0.1917.71e-171.04e-15
genusActinomyces-0.1841.21e-151.59e-14
speciesAlistipes_finegoldii0.1822.55e-153.25e-14
familyActinomycetaceae-0.1771.27e-141.58e-13
speciesParabacteroides_merdae0.171.57e-131.9e-12
genusButyricimonas0.1673.3e-133.8e-12
speciesButyricimonas_synergistica0.1673.3e-133.8e-12
speciesBacteroides_ovatus0.1622.02e-122.27e-11
familyClostridiales_noname0.1594e-124.39e-11
speciesLachnospiraceae_bacterium_7_1_58FAA0.1594.12e-124.42e-11
genusAnaerotruncus0.1586.45e-126.77e-11
speciesClostridium_citroniae0.1561.08e-111.11e-10
phylumActinobacteria-0.1551.54e-111.51e-10
classActinobacteria-0.1551.54e-111.51e-10
speciesBacteroides_thetaiotaomicron0.1532.83e-112.73e-10
speciesAlistipes_senegalensis0.1533.21e-113.03e-10
speciesBacteroides_nordii0.1514.73e-114.38e-10
genusFlavonifractor0.157.86e-117e-10
speciesFlavonifractor_plautii0.157.86e-117e-10
orderBifidobacteriales-0.1491.01e-108.67e-10
familyBifidobacteriaceae-0.1491.01e-108.67e-10
genusBifidobacterium-0.1491.05e-108.85e-10
genusBlautia-0.1471.63e-101.35e-09
familyOxalobacteraceae0.1471.76e-101.43e-09
genusOxalobacter0.1462.02e-101.59e-09
speciesOxalobacter_formigenes0.1462.02e-101.59e-09
speciesBacteroides_stercoris0.1462.51e-101.94e-09
genusHoldemania0.1435.28e-104.02e-09
speciesStreptococcus_sanguinis-0.1426.03e-104.52e-09
genusDesulfovibrio0.1418.12e-105.99e-09
speciesBacteroides_caccae0.1418.29e-106.02e-09
speciesBacteroides_uniformis0.1419.7e-106.94e-09
classBacilli-0.1391.39e-099.79e-09
speciesClostridium_asparagiforme0.1381.82e-091.26e-08
orderLactobacillales-0.1381.87e-091.28e-08
genusBarnesiella0.1372.7e-091.77e-08
speciesBacteroides_cellulosilyticus0.1372.7e-091.77e-08
speciesBarnesiella_intestinihominis0.1372.7e-091.77e-08
orderBacillales-0.1363.64e-092.35e-08
speciesAlistipes_sp_AP110.1363.85e-092.46e-08
genusSolobacterium-0.1354.23e-092.63e-08
speciesSolobacterium_moorei-0.1354.23e-092.63e-08
orderActinomycetales-0.1354.9e-093e-08
speciesBifidobacterium_longum-0.1346.62e-094.01e-08
speciesAnaerotruncus_colihominis0.1329.92e-095.93e-08
orderCoriobacteriales-0.131.71e-089.96e-08
familyCoriobacteriaceae-0.131.71e-089.96e-08
genusDorea-0.1292.24e-081.29e-07
genusStreptococcus-0.1282.82e-081.6e-07
speciesBacteroides_dorei0.1273.22e-081.81e-07
familyStreptococcaceae-0.1273.6e-082e-07
familyLachnospiraceae-0.1273.96e-082.17e-07
speciesDesulfovibrio_desulfuricans0.1264.09e-082.2e-07
familyBacillales_noname-0.1264.15e-082.2e-07
genusGemella-0.1264.15e-082.2e-07
speciesBacteroides_salyersiae0.1264.28e-082.24e-07
speciesLachnospiraceae_bacterium_5_1_63FAA-0.1248.35e-084.33e-07
speciesParabacteroides_distasonis0.1221.11e-075.69e-07
speciesRuminococcus_sp_5_1_39BFAA-0.1192.22e-071.13e-06
speciesParabacteroides_goldsteinii0.1192.38e-071.2e-06
phylumProteobacteria0.1192.52e-071.25e-06
phylumFirmicutes-0.1192.64e-071.3e-06
speciesRoseburia_hominis0.1182.85e-071.39e-06
genusCoprobacillus-0.1183.01e-071.45e-06
speciesBacteroides_intestinalis0.1183.04e-071.45e-06
speciesStreptococcus_mutans-0.1183.13e-071.48e-06
speciesClostridium_hathewayi0.1164.53e-072.12e-06
speciesStreptococcus_gordonii-0.1164.88e-072.26e-06
speciesStreptococcus_parasanguinis-0.1164.99e-072.29e-06
speciesBacteroides_xylanisolvens0.1155.72e-072.6e-06
speciesCoprobacillus_unclassified-0.1139.11e-074.1e-06
genusPeptostreptococcaceae_noname-0.1139.96e-074.44e-06
speciesParabacteroides_johnsonii0.1121.23e-065.43e-06
familyPeptostreptococcaceae-0.1121.28e-065.58e-06
genusCoprobacter0.1121.3e-065.58e-06
speciesCoprobacter_fastidiosus0.1121.3e-065.58e-06
genusErysipelotrichaceae_noname-0.1121.34e-065.7e-06
speciesStreptococcus_salivarius-0.1111.38e-065.82e-06
speciesHoldemania_filiformis0.1092.15e-068.9e-06
speciesRuminococcus_obeum-0.1092.15e-068.9e-06
speciesBacteroides_vulgatus0.1092.43e-069.97e-06
phylumSynergistetes0.1082.97e-061.18e-05
classSynergistia0.1082.97e-061.18e-05
orderSynergistales0.1082.97e-061.18e-05
familySynergistaceae0.1082.97e-061.18e-05
speciesLactobacillus_rhamnosus-0.1064.47e-061.76e-05
speciesAnaerotruncus_unclassified0.1055.1e-061.99e-05
speciesStreptococcus_anginosus-0.1055.33e-062.04e-05
genusPyramidobacter0.1055.37e-062.04e-05
speciesPyramidobacter_piscolens0.1055.37e-062.04e-05
speciesAnaerostipes_hadrus-0.1055.48e-062.07e-05
classErysipelotrichia-0.1055.86e-062.16e-05
orderErysipelotrichales-0.1055.86e-062.16e-05
familyErysipelotrichaceae-0.1055.86e-062.16e-05
familyEnterococcaceae-0.1046.97e-062.55e-05
genusEnterococcus-0.1038.31e-063.02e-05
speciesClostridium_ramosum-0.1029.08e-063.27e-05
speciesStreptococcus_mitis_oralis_pneumoniae-0.1021.07e-053.83e-05
speciesBacteroides_massiliensis0.1011.25e-054.44e-05
speciesEggerthella_lenta-0.1011.28e-054.51e-05
genusCollinsella-0.11.35e-054.72e-05
speciesLachnospiraceae_bacterium_1_4_56FAA-0.0991.64e-055.69e-05
speciesClostridiales_bacterium_1_7_47FAA0.0982.01e-056.92e-05
speciesDorea_formicigenerans-0.0982.14e-057.32e-05
speciesOscillibacter_sp_KLE_17450.0972.57e-058.73e-05
speciesEubacterium_eligens0.0953.56e-050.00012
speciesCollinsella_aerofaciens-0.0953.67e-050.000122
speciesLactobacillus_casei_paracasei-0.0953.68e-050.000122
speciesHoldemania_unclassified0.0945.06e-050.000167
speciesStreptococcus_thermophilus-0.0935.67e-050.000186
familyLactobacillaceae-0.0926.35e-050.000206
genusClostridiaceae_noname0.0926.43e-050.000206
speciesClostridiaceae_bacterium_JC1180.0926.43e-050.000206
genusFaecalibacterium0.0927.34e-050.000233
speciesFaecalibacterium_prausnitzii0.0927.34e-050.000233
speciesBifidobacterium_dentium-0.099.5e-050.000299
speciesLactobacillus_gasseri-0.0890.0001130.000353
speciesBacteroides_oleiciplenus0.0880.0001320.00041
speciesDorea_longicatena-0.0880.0001330.00041
genusClostridiales_noname0.0880.0001350.000414
genusAnaerostipes-0.0860.0001910.000582
familyMicrococcaceae-0.0860.0002070.000626
genusRothia-0.0860.000210.000631
genusLactobacillus-0.0850.0002290.000684
speciesRuminococcus_sp_JC304-0.0850.0002340.000695
speciesPeptostreptococcaceae_noname_unclassified-0.0840.0002830.000835
speciesBacteroides_fragilis0.0840.0002960.000868
genusPeptostreptococcus-0.0830.0003080.000897
genusSubdoligranulum0.0810.0004360.00126
speciesRuminococcus_gnavus-0.0810.0004710.00136
speciesStreptococcus_vestibularis-0.0790.0006040.00173
speciesRuminococcus_torques-0.0780.000740.0021
speciesRothia_mucilaginosa-0.0770.0008410.00238
genusPropionibacterium-0.0770.0008770.00246
speciesSubdoligranulum_unclassified0.0770.0009030.00252
genusPseudoflavonifractor0.0760.0009340.00258
speciesPseudoflavonifractor_capillosus0.0760.0009340.00258
genusLactococcus-0.0760.001080.00296
speciesBlautia_hydrogenotrophica-0.0750.00120.00326
speciesClostridium_bolteae0.0750.00120.00326
speciesBifidobacterium_adolescentis-0.0750.001240.00334
speciesLactococcus_lactis-0.0740.001450.00389
genusRuminococcus-0.0720.001810.00483
speciesBacteroides_plebeius0.0710.002150.0057
speciesPropionibacterium_freudenreichii-0.070.002320.00612
speciesClostridium_spiroforme-0.0690.002720.00713
speciesEubacterium_siraeum0.0690.002780.00725
speciesEubacterium_hallii-0.0690.002860.00742
genusLeuconostoc-0.0690.002880.00743
speciesLachnospiraceae_bacterium_3_1_46FAA0.0680.003150.00808
speciesErysipelotrichaceae_bacterium_21_3-0.0680.003170.00809
genusEggerthella-0.0670.003730.00947
speciesBacteroides_coprocola0.0670.00390.00984
speciesEggerthella_sp_1_3_56FAA-0.0660.004510.0113
speciesLactobacillus_fermentum-0.0650.004670.0117
speciesRuminococcus_callidus0.0650.00470.0117
familyClostridiales_Family_XI_Incertae_Sedis-0.0650.0050.0124
classClostridia-0.0650.005260.0129
orderClostridiales-0.0650.005260.0129
speciesClostridium_symbiosum0.0640.005760.014
speciesEnterococcus_faecium-0.0640.005980.0145
speciesSutterella_wadsworthensis-0.0630.006080.0146
speciesOdoribacter_unclassified-0.0630.006340.0152
genusSutterella-0.0630.006750.0161
speciesEnterococcus_faecalis-0.0620.007120.0169
speciesErysipelotrichaceae_bacterium_3_1_53-0.0620.007460.0176
familyLeuconostocaceae-0.0620.00760.0178
genusRoseburia0.0610.007870.0184
speciesBifidobacterium_catenulatum-0.0610.007980.0186
speciesLactobacillus_plantarum-0.0610.008190.0189
speciesEggerthella_unclassified-0.060.009440.0217
speciesLachnospiraceae_bacterium_8_1_57FAA-0.0590.01050.0241
speciesClostridium_bartlettii-0.0590.01060.0242
familyPropionibacteriaceae-0.0590.01080.0245
speciesBacteroides_clarus0.0590.01110.0251
speciesLactobacillus_vaginalis-0.0590.01120.0252
speciesBifidobacterium_bifidum-0.0590.01140.0255
speciesParaprevotella_xylaniphila0.0580.01150.0256
speciesBacteroides_finegoldii0.0580.01180.0261
speciesLachnospiraceae_bacterium_9_1_43BFAA-0.0580.0120.0265
genusTuricibacter-0.0570.01380.0303
speciesPeptostreptococcus_anaerobius-0.0560.01540.0337
speciesBacteroides_sp_3_1_190.0540.020.0435
speciesBifidobacterium_animalis-0.0540.02060.0446
speciesEubacterium_biforme-0.0530.02150.0463
speciesAlistipes_unclassified-0.0530.02240.0481
speciesCoprococcus_catus-0.0520.02340.05
speciesKlebsiella_unclassified0.0520.02570.0546
genusOlsenella-0.0510.02650.0561
speciesTuricibacter_sanguinis-0.0510.02690.0567
orderPseudomonadales-0.0510.02710.0568
familyStaphylococcaceae-0.0510.02830.0591
genusParvimonas-0.050.02910.0605
speciesParvimonas_unclassified-0.050.02930.0607
genusStaphylococcus-0.050.03170.0653
speciesGemella_morbillorum-0.0490.03260.0669
genusAcidaminococcaceae_unclassified0.0490.0340.0695
speciesEubacterium_ventriosum0.0470.04060.0826
speciesRoseburia_inulinivorans0.0470.04140.0839
speciesDesulfovibrio_piger0.0470.04250.0857
genusDialister-0.0470.04310.0866
speciesStreptococcus_australis-0.0460.0450.09
speciesErysipelotrichaceae_bacterium_2_2_44A-0.0460.04660.0928
speciesClostridium_sp_ATCC_BAA_4420.0460.04750.0942
speciesBacteroides_faecis0.0460.04830.0954
genusMitsuokella0.0460.04910.0966
speciesOlsenella_unclassified-0.0450.05060.0991
speciesBacteroides_eggerthii0.0450.05360.105
speciesLachnospiraceae_bacterium_1_1_57FAA0.0440.05440.106
speciesEubacterium_cylindroides-0.0440.05490.106
speciesHoldemania_sp_AP20.0430.06180.119
genusCatenibacterium-0.0420.0690.132
speciesCatenibacterium_mitsuokai-0.0420.0690.132
speciesLactococcus_phage_P680-0.0420.07210.137
speciesDorea_unclassified-0.0410.07430.141
orderViruses_noname-0.0410.0760.143
speciesKlebsiella_pneumoniae0.0410.07810.147
speciesPeptostreptococcus_stomatis-0.0410.07870.147
speciesRuminococcus_lactaris0.0410.07930.148
speciesBlautia_producta-0.040.08060.15
speciesTuricibacter_unclassified-0.040.0820.152
speciesEnterobacter_cloacae0.040.08470.156
speciesMitsuokella_unclassified0.040.08550.157
speciesStreptococcus_phage_Sfi210.0390.08940.163
speciesDialister_invisus-0.0390.08940.163
familyClostridiaceae0.0390.09170.166
speciesLachnospiraceae_bacterium_3_1_57FAA_CT10.0390.09420.17
speciesLactobacillus_mucosae-0.0390.09590.173
genusButyrivibrio0.0370.1060.19
genusKlebsiella0.0370.110.196
speciesMegamonas_rupellensis0.0370.110.196
speciesParaprevotella_clara0.0370.1120.199
genusClostridium0.0370.1130.2
speciesParabacteroides_unclassified0.0360.1160.204
orderAeromonadales0.0360.1170.205
genusLachnospiraceae_noname-0.0360.1190.208
speciesLactobacillus_salivarius-0.0360.1220.212
speciesCoprococcus_comes-0.0360.1240.215
speciesLactobacillus_acidophilus-0.0360.1250.216
speciesCollinsella_tanakaei0.0350.1260.217
genusPantoea-0.0350.1270.217
speciesPantoea_unclassified-0.0350.1270.217
speciesLactobacillus_delbrueckii-0.0350.130.219
genusSiphoviridae_noname-0.0350.1310.219
phylumVerrucomicrobia0.0350.1330.219
classVerrucomicrobiae0.0350.1330.219
orderVerrucomicrobiales0.0350.1330.219
familyVerrucomicrobiaceae0.0350.1330.219
genusActinobacillus-0.0350.1330.219
genusAkkermansia0.0350.1330.219
speciesActinobacillus_unclassified-0.0350.1330.219
speciesAkkermansia_muciniphila0.0350.1330.219
genusRuminococcaceae_noname0.0350.1340.22
speciesRuminococcaceae_bacterium_D160.0350.1340.22
phylumViruses_noname-0.0350.1350.22
classViruses_noname-0.0350.1350.22
genusEnterobacter0.0340.1370.221
genusCoprococcus-0.0340.1370.221
genusParaprevotella0.0340.140.226
speciesLachnospiraceae_bacterium_6_1_63FAA-0.0340.1420.228
speciesLactobacillus_oris-0.0340.1450.232
speciesPorphyromonas_asaccharolytica0.0330.1490.238
genusPorphyromonas0.0330.1520.241
orderPasteurellales0.0330.1530.241
familyPasteurellaceae0.0330.1530.241
speciesParaprevotella_unclassified0.0330.1530.241
speciesLachnospiraceae_bacterium_5_1_57FAA-0.0330.1540.241
familyViruses_noname-0.0330.1550.241
genusViruses_noname-0.0330.1550.241
speciesAcidaminococcus_intestini0.0330.1550.241
familySiphoviridae-0.0330.1570.243
genusPeptoniphilus-0.0320.1630.251
speciesFusobacterium_nucleatum-0.0320.1630.251
speciesHaemophilus_parainfluenzae0.0320.1660.254
genusHaemophilus0.0310.1730.264
speciesRoseburia_unclassified-0.0310.1740.265
speciesHaemophilus_paraphrohaemolyticus-0.030.1880.285
speciesLachnospiraceae_bacterium_2_1_58FAA-0.030.1920.29
speciesOscillibacter_sp_KLE_17280.030.1990.3
speciesCoprococcus_sp_ART55_10.030.20.301
speciesAcidaminococcus_unclassified-0.0290.2070.31
speciesBacteroides_salanitronis-0.0290.2080.311
speciesAnaerostipes_unclassified0.0280.2190.326
genusProteus-0.0280.2220.33
speciesMegasphaera_micronuciformis-0.0270.2350.348
speciesEnterobacter_aerogenes-0.0270.240.354
speciesClostridium_sp_L2_500.0270.2420.356
speciesPrevotella_bivia-0.0270.2430.356
speciesSlackia_piriformis0.0270.2460.358
speciesEubacterium_sp_3_1_310.0270.2460.358
speciesFusobacterium_mortiferum0.0270.2470.359
speciesSubdoligranulum_sp_4_3_54A2FAA0.0270.2480.359
familyPodoviridae0.0260.2570.371
speciesAcidaminococcus_fermentans0.0260.260.374
speciesEscherichia_coli0.0250.2730.392
speciesMitsuokella_multacida-0.0250.2790.399
speciesLactococcus_phage_jm2-0.0250.2810.401
orderCaudovirales-0.0250.2860.407
speciesDialister_succinatiphilus-0.0250.2870.407
speciesMethanobrevibacter_unclassified0.0240.2920.413
genusEscherichia0.0240.2930.413
genusMethanosphaera-0.0240.2980.417
speciesMethanosphaera_stadtmanae-0.0240.2980.417
speciesEnterobacteria_phage_HK5440.0240.2990.418
speciesHaemophilus_sputorum-0.0240.3010.418
speciesBacteroides_sp_2_1_220.0240.3020.418
genusButyricicoccus0.0240.3030.418
speciesButyricicoccus_pullicaecorum0.0240.3030.418
speciesButyrivibrio_unclassified0.0240.3050.42
familySuccinivibrionaceae0.0240.3060.42
speciesButyrivibrio_crossotus0.0240.3090.423
speciesPrevotella_stercorea0.0230.3240.442
genusTunalikevirus-0.0230.3260.442
speciesBifidobacterium_breve-0.0230.3260.442
genusMegasphaera-0.0230.3280.444
speciesBacteroides_sp_1_1_60.0220.3350.452
speciesClostridium_perfringens-0.0220.3420.46
speciesEubacterium_limosum-0.0220.3440.46
speciesLactobacillus_crispatus-0.0220.3440.46
genusSuccinatimonas0.0210.3630.48
genusLambdalikevirus0.0210.3630.48
speciesSuccinatimonas_hippei0.0210.3630.48
genusPhascolarctobacterium-0.0210.3640.48
speciesPhascolarctobacterium_succinatutens-0.0210.3640.48
speciesKlebsiella_sp_MS_92_30.0210.3690.485
genusPrevotella0.020.3830.502
familyPrevotellaceae0.020.3880.507
speciesErysipelotrichaceae_bacterium_6_1_45-0.020.390.509
speciesBifidobacterium_pseudocatenulatum0.020.3930.511
speciesMegamonas_funiformis0.0190.4070.528
speciesLactococcus_garvieae-0.0190.4130.534
familyVeillonellaceae-0.0190.4230.546
genusMorganella0.0180.4360.559
speciesMorganella_morganii0.0180.4360.559
speciesCampylobacter_concisus-0.0180.4370.559
genusAdlercreutzia0.0180.4460.567
speciesAdlercreutzia_equolifaciens0.0180.4460.567
speciesEubacterium_rectale-0.0170.4540.576
genusSutterellaceae_unclassified-0.0170.4590.581
speciesMethanobrevibacter_smithii-0.0170.4610.582
speciesPrevotella_copri0.0170.470.592
familyAcidaminococcaceae0.0170.4730.592
phylumFusobacteria-0.0170.4750.592
classFusobacteriia-0.0170.4750.592
orderFusobacteriales-0.0170.4750.592
speciesCoprobacillus_sp_29_1-0.0160.480.596
speciesEscherichia_unclassified0.0160.4910.608
genusFusobacterium-0.0160.4940.61
speciesParabacteroides_sp_D130.0160.50.616
orderEnterobacteriales0.0150.5050.619
familyEnterobacteriaceae0.0150.5050.619
speciesBacteroides_fluxus-0.0150.5090.619
speciesClostridium_clostridioforme-0.0150.5090.619
speciesRoseburia_intestinalis0.0150.5090.619
speciesKlebsiella_phage_KP36-0.0150.5190.628
speciesCollinsella_intestinalis0.0150.5190.628
speciesProteus_mirabilis-0.0150.520.628
speciesStreptococcus_lutetiensis0.0150.5230.63
speciesBacteroides_coprophilus0.0150.5270.633
genusAggregatibacter-0.0140.5360.642
speciesLactococcus_phage_phi7-0.0140.540.645
familyCampylobacteraceae0.0140.5450.65
speciesPorphyromonas_uenonis0.0140.5580.663
classNegativicutes-0.0130.5650.667
orderSelenomonadales-0.0130.5650.667
speciesBacteroides_pectinophilus0.0130.5650.667
speciesAlistipes_sp_HGB50.0130.5670.667
familyFusobacteriaceae-0.0130.5720.67
genusMegamonas0.0130.5720.67
speciesMegamonas_unclassified0.0130.5830.68
genusGordonibacter-0.0130.5850.68
speciesGordonibacter_pamelaeae-0.0130.5850.68
speciesCoprococcus_eutactus-0.0120.5980.694
genusCampylobacter0.0120.6020.696
speciesBifidobacterium_angulatum0.0120.6060.699
speciesStreptococcus_pasteurianus0.0120.6080.699
speciesSutterella_parvirubra-0.0120.6090.699
speciesLactobacillus_sanfranciscensis0.0110.620.71
speciesMegasphaera_elsdenii-0.0110.6210.71
speciesLeuconostoc_lactis-0.0110.6290.717
speciesMegamonas_hypermegale0.0110.6390.727
genusMethanobrevibacter-0.0110.6450.732
speciesErysipelotrichaceae_bacterium_5_2_54FAA0.010.650.736
speciesFusobacterium_varium-0.010.6590.743
speciesParabacteroides_sp_20_30.010.6610.743
speciesFusobacterium_ulcerans-0.010.6610.743
speciesCitrobacter_freundii0.0090.6890.772
familyMyoviridae0.0090.6910.773
speciesLactobacillus_amylovorus-0.0090.7090.79
speciesClostridium_sp_KLE_1755-0.0090.710.79
genusSlackia0.0080.7140.791
speciesRuminococcus_bromii0.0080.7140.791
classMethanobacteria-0.0080.7230.793
orderMethanobacteriales-0.0080.7230.793
familyMethanobacteriaceae-0.0080.7230.793
speciesEubacterium_dolichum-0.0080.7230.793
speciesEubacterium_ramulus-0.0080.7240.793
phylumEuryarchaeota-0.0080.7450.813
genusWeissella-0.0080.7460.813
speciesLactobacillus_ruminis-0.0070.7550.821
speciesClostridium_nexile0.0070.7570.821
classEpsilonproteobacteria0.0070.7610.822
orderCampylobacterales0.0070.7610.822
speciesMegasphaera_unclassified-0.0070.7720.832
speciesAggregatibacter_segnis0.0070.7750.833
speciesPrevotella_buccae-0.0060.7820.839
speciesVeillonella_atypica-0.0060.7920.848
genusCitrobacter0.0060.7960.85
genusMyoviridae_noname-0.0060.8060.859
speciesBacteroides_barnesiae0.0060.8110.862
speciesBacteroides_sp_4_3_47FAA0.0050.8130.862
speciesVeillonella_parvula-0.0050.8150.863
classGammaproteobacteria-0.0050.8180.864
speciesClostridium_leptum0.0050.8240.864
speciesWeissella_confusa-0.0050.8250.864
genusEubacterium0.0050.8270.864
genusC2likevirus-0.0050.8280.864
speciesC2likevirus_unclassified-0.0050.830.864
speciesCoriobacteriaceae_bacterium_phI-0.0050.8320.864
familyRuminococcaceae-0.0050.8330.864
familyEubacteriaceae0.0050.8350.864
speciesLactobacillus_reuteri-0.0050.8350.864
speciesVeillonella_unclassified0.0040.8490.877
speciesCitrobacter_unclassified0.0040.8550.881
speciesCoprobacillus_sp_D60.0040.8640.888
genusCoriobacteriaceae_noname-0.0030.9070.931
speciesLactococcus_phage_936_sensu_lato-0.0020.9220.944
genusVeillonella0.0020.9290.949
speciesWeissella_cibaria0.0020.9410.958
genusAcidaminococcus-0.0020.9420.958
speciesLachnospiraceae_bacterium_2_1_46FAA-0.0020.9460.959
speciesLactococcus_phage_bIL67-0.0020.9470.959
speciesRuminococcus_champanellensis0.0010.950.96
speciesKlebsiella_oxytoca0.0010.9750.981
speciesCollinsella_unclassified-0.0010.9760.981
speciesVeillonella_dispar0.0010.9770.981
speciesOdoribacter_laneus0.00.9830.985
speciesStreptococcus_infantarius0.00.9910.991
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Association of query gene abundance with clinical phenotypes:

Boxplots:


Statistics:

pheno country case_n ctrl_n case_mean ctrl_mean pvalue rank percentile
Liver cirrhosisChina1201140.02462656224280.02687454048070.014574665881154038.7652
Type II diabetesChina1831850.02562657872260.01852744623680.0164681186024445114.7097
Rheumatoid arthritisChina127980.02126877509880.01931908847190.0855207981992477915.9369
Type II diabetesDenmark752770.0194976259880.01777444612730.1837244693651255141.1414
ObesityDenmark1691230.01790666738030.01742102183660.2778807437111358744.6779
Ulcerative colitisSpain78660.01497018120830.01569774149790.5504730848082037267.2033
Colorectal cancerAustria64350.01005161927980.009835517926660.6007471225412051269.4005
Type II diabetesSweden53920.01373581254380.01319897001030.7239968561692199174.47
Crohns diseaseSpain17660.01823569837740.01569774149790.9056875994362893996.2228
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Citation:

Nayfach S, Fischbach MA, Pollard KS. MetaQuery: a web server for rapid annotation and quantitative analysis of specific genes in the human gut microbiome. Bioinformatics 2015;31(14). doi:10.1093/bioinformatics/btv382