MetaQuery: quantitative analysis of the human gut microbiome

Results

Estimated gene abundances and results from statistical analyses

Job details:

Submission date: 2020-12-31 19:31:27 PST
Job id & description: 2348, spt
Query type: protein
Count queries & homologs: 1, 16
Min % identity & max e-value: 30%, 1e-5
Min % query & target coverage: 70%, 70%

Click here to download results

Table of contents:


Gut microbiome genes homologous to your query gene:

query_id target_id status kegg eggnog phylum genus query_cov target_cov percent_identity
SPT6573671CompleteunknownunknownBacteroidetesBacteroides100.0100.0100.0
SPT6568805CompleteunknownunknownBacteroidetesBacteroides100.0100.095.45
SPT6404315Completeunknownunknownunknownunknown96.2192.0966.41
SPT6734681Completeunknownunknownunknownunknown96.2199.2151.97
SPT6177488Completeunknownunknownunknownunknown93.9484.3550.0
SPT6642821Completeunknownunknownunknownunknown87.8889.2349.14
SPT6793570Completeunknownunknownunknownunknown86.3694.3546.15
SPT6493615Completeunknownunknownunknownunknown86.3686.6745.3
SPT6270269Lack 5'-endunknownunknownunknownunknown87.1281.2549.57
SPT6777524Completeunknownunknownunknownunknown87.8892.039.32
SPT5625481Completeunknownunknownunknownunknown91.6772.6231.97
SPT6240754Lack 5'-endunknownunknownunknownunknown91.6784.1431.97
SPT7046363Lack 5'-endunknownunknownunknownunknown85.6199.1333.33
SPT6773182Completeunknownunknownunknownunknown88.6492.830.51
SPT6759121Completeunknownunknownunknownunknown91.6793.631.4
SPT7041729Completeunknownunknownunknownunknown84.8592.1731.25
Click on arrows to sort table data. Shift+click to sort by multiple columns.

The abundance of your query across gut microbiome samples:




The prevalence of your query across gut microbiome samples:




Taxonomic groups correlated with your query gene:

tax_level tax_name spearman_rho pvalue qvalue
speciesBacteroides_fragilis0.1443.98e-101.88e-07
speciesBacteroides_oleiciplenus0.1363.15e-097.43e-07
speciesFusobacterium_mortiferum0.1221.28e-072.01e-05
speciesPrevotella_stercorea0.1147.01e-078.27e-05
speciesBacteroides_thetaiotaomicron0.111.83e-060.000162
speciesAnaerostipes_hadrus-0.112.06e-060.000162
speciesBacteroides_coprocola0.1083.08e-060.000208
speciesPrevotella_copri0.1073.56e-060.00021
speciesBacteroides_intestinalis0.1064.58e-060.00024
genusAnaerostipes-0.1037.57e-060.000357
speciesBacteroides_plebeius0.1021.01e-050.000433
speciesPrevotella_buccae0.1011.26e-050.000465
genusRuminococcus-0.1011.28e-050.000465
genusPrevotella0.0991.79e-050.000603
speciesClostridium_nexile0.0991.92e-050.000604
speciesEscherichia_coli0.0953.72e-050.0011
orderCoriobacteriales-0.0926.35e-050.00167
familyCoriobacteriaceae-0.0926.35e-050.00167
familyFusobacteriaceae0.0917.97e-050.00197
classClostridia-0.0918.75e-050.00197
orderClostridiales-0.0918.75e-050.00197
orderEnterobacteriales0.090.00010.00201
familyEnterobacteriaceae0.090.00010.00201
speciesParabacteroides_goldsteinii0.090.0001020.00201
phylumFusobacteria0.0880.0001320.00231
classFusobacteriia0.0880.0001320.00231
orderFusobacteriales0.0880.0001320.00231
genusEscherichia0.0880.0001480.00249
classGammaproteobacteria0.0860.0001980.00322
phylumActinobacteria-0.0850.0002460.00375
classActinobacteria-0.0850.0002460.00375
familyPropionibacteriaceae-0.0840.0002690.00397
speciesBifidobacterium_adolescentis-0.0830.0003220.00452
phylumProteobacteria0.0830.0003290.00452
speciesFusobacterium_varium0.0830.0003350.00452
genusGordonibacter-0.0820.0003630.00463
speciesGordonibacter_pamelaeae-0.0820.0003630.00463
genusFusobacterium0.0820.0003790.00471
familyPrevotellaceae0.0820.0004070.00493
familySiphoviridae-0.0770.0008850.0102
familyRuminococcaceae-0.0770.000890.0102
genusC2likevirus-0.0750.001160.0128
phylumBacteroidetes0.0750.001230.0128
classBacteroidia0.0750.001230.0128
orderBacteroidales0.0750.001230.0128
phylumViruses_noname-0.0740.001270.0128
classViruses_noname-0.0740.001270.0128
orderCaudovirales-0.0740.001390.0131
speciesCampylobacter_concisus0.0740.001450.0131
speciesKlebsiella_pneumoniae0.0740.001470.0131
speciesC2likevirus_unclassified-0.0730.00150.0131
phylumFirmicutes-0.0730.001520.0131
speciesErysipelotrichaceae_bacterium_6_1_45-0.0730.001550.0131
speciesBacteroides_clarus0.0730.001550.0131
genusDorea-0.0730.001590.0131
speciesBacteroides_cellulosilyticus0.0730.001610.0131
orderBifidobacteriales-0.0730.001640.0131
familyBifidobacteriaceae-0.0730.001640.0131
genusLeuconostoc-0.0730.001640.0131
speciesVeillonella_atypica0.0730.001670.0131
speciesRuminococcus_bromii-0.0720.001720.0133
genusBifidobacterium-0.0720.00180.0137
speciesStreptococcus_anginosus0.0720.001920.0144
genusPropionibacterium-0.0710.002140.0158
speciesDorea_longicatena-0.0710.002240.0163
orderAeromonadales0.070.002580.0179
speciesSutterella_parvirubra0.070.002580.0179
speciesRuminococcus_sp_5_1_39BFAA-0.070.002590.0179
genusOdoribacter0.070.002610.0179
familySutterellaceae0.0690.002870.0194
speciesVeillonella_dispar0.0680.003040.0202
speciesParabacteroides_distasonis0.0680.003160.0207
speciesLactobacillus_salivarius0.0670.003830.0246
genusKlebsiella0.0670.003850.0246
speciesBifidobacterium_longum-0.0660.004030.0254
speciesLachnospiraceae_bacterium_8_1_57FAA-0.0660.004280.0266
speciesEubacterium_rectale-0.0660.004370.0268
genusCoprococcus-0.0650.004790.029
speciesMegamonas_unclassified0.0650.005180.0309
genusMegamonas0.0640.005380.0317
speciesLachnospiraceae_bacterium_5_1_63FAA-0.0630.006320.0368
classBetaproteobacteria0.0620.00720.0414
orderBurkholderiales0.0620.007290.0415
speciesOdoribacter_splanchnicus0.0620.007430.0417
speciesBacteroides_nordii0.0610.008620.0479
speciesAcidaminococcus_unclassified-0.060.009270.0507
speciesStreptococcus_thermophilus-0.060.009340.0507
speciesCoprococcus_comes-0.0590.01010.0542
genusVeillonella0.0590.01050.0557
speciesBacteroides_salyersiae0.0590.01110.0582
speciesErysipelotrichaceae_bacterium_21_3-0.0580.01160.0602
speciesMegasphaera_micronuciformis0.0580.01180.0605
familyClostridiales_Family_XI_Incertae_Sedis-0.0580.01240.0623
speciesBacteroides_finegoldii0.0580.01240.0623
speciesStreptococcus_pasteurianus0.0570.01350.0656
speciesButyrivibrio_unclassified-0.0570.01370.0656
speciesVeillonella_parvula0.0570.01370.0656
speciesClostridiales_bacterium_1_7_47FAA0.0570.01380.0656
familyBacteroidaceae0.0570.01390.0656
genusBacteroides0.0570.01390.0656
speciesEggerthella_lenta-0.0560.01590.0733
speciesParabacteroides_johnsonii0.0560.0160.0733
speciesRuminococcus_gnavus0.0560.0160.0733
genusLactococcus-0.0550.01650.0749
speciesBlautia_hydrogenotrophica-0.0550.01690.076
speciesFusobacterium_ulcerans0.0550.01740.0775
speciesRoseburia_unclassified-0.0550.0180.0791
speciesBacteroides_fluxus0.0550.01810.0791
speciesClostridium_perfringens0.0550.01840.0797
speciesSubdoligranulum_unclassified-0.0540.0190.0815
speciesLactobacillus_acidophilus-0.0540.02010.0855
speciesLactococcus_lactis-0.0540.02030.0856
speciesClostridium_symbiosum0.0530.02120.0886
speciesCoprococcus_catus-0.0530.02190.0907
speciesBacteroides_massiliensis0.0530.02290.094
speciesBacteroides_coprophilus0.0530.02310.094
genusSubdoligranulum-0.0520.02360.0952
genusSiphoviridae_noname-0.0520.0240.096
speciesClostridium_leptum-0.0510.02710.107
genusAdlercreutzia-0.0510.02810.11
speciesAdlercreutzia_equolifaciens-0.0510.02810.11
speciesVeillonella_unclassified0.0510.02890.112
genusCampylobacter0.050.03060.117
speciesPropionibacterium_freudenreichii-0.050.03140.12
familyEubacteriaceae-0.0490.03320.125
genusEubacterium-0.0490.03340.125
speciesMegamonas_rupellensis0.0490.03370.125
speciesCollinsella_aerofaciens-0.0490.03410.125
speciesClostridium_bolteae0.0490.03420.125
speciesLactococcus_phage_P680-0.0490.03440.125
orderPseudomonadales-0.0490.03490.126
familyCampylobacteraceae0.0490.03580.128
speciesEnterococcus_faecium-0.0480.0370.13
speciesAggregatibacter_segnis0.0480.03720.13
familyBacteroidales_noname-0.0480.03810.13
genusBacteroidales_noname-0.0480.03810.13
speciesClostridium_hathewayi0.0480.03810.13
speciesBacteroidales_bacterium_ph8-0.0480.03810.13
genusCollinsella-0.0480.03960.134
genusDialister-0.0470.04170.141
speciesBacteroides_xylanisolvens0.0470.04320.145
speciesAlistipes_sp_AP11-0.0470.04420.147
speciesLactococcus_phage_bIL67-0.0460.04460.147
speciesDorea_formicigenerans-0.0460.04550.149
genusParabacteroides0.0460.04650.151
speciesLactobacillus_casei_paracasei-0.0460.04690.152
speciesBifidobacterium_animalis-0.0460.04730.152
speciesBifidobacterium_pseudocatenulatum0.0460.04810.153
speciesFusobacterium_nucleatum0.0450.05060.158
classEpsilonproteobacteria0.0450.05070.158
orderCampylobacterales0.0450.05070.158
speciesBacteroides_stercoris0.0450.05170.161
familyActinomycetaceae-0.0450.05280.163
speciesClostridium_asparagiforme0.0450.05360.164
speciesEnterobacter_cloacae0.0440.05490.167
speciesDesulfovibrio_piger0.0440.05630.17
speciesBacteroides_vulgatus0.0440.05650.17
speciesClostridium_bartlettii-0.0440.05680.17
familyEnterococcaceae-0.0440.05740.17
genusTuricibacter-0.0440.05920.175
genusOlsenella-0.0430.06290.184
speciesHaemophilus_parainfluenzae0.0430.06370.186
genusClostridium0.0430.06550.189
genusEnterococcus-0.0420.06630.189
speciesEggerthella_sp_1_3_56FAA-0.0420.06710.189
speciesBacteroides_sp_1_1_6-0.0420.06710.189
speciesParaprevotella_unclassified0.0420.06730.189
speciesStreptococcus_salivarius0.0420.06740.189
genusParaprevotella0.0420.06820.189
speciesBlautia_producta-0.0420.06820.189
genusActinomyces-0.0420.07060.195
speciesMegamonas_hypermegale0.0420.0710.195
genusHaemophilus0.0420.07190.195
speciesParabacteroides_unclassified0.0420.07190.195
speciesRuminococcus_obeum-0.0410.07580.204
familyClostridiaceae0.0410.07590.204
genusLachnospiraceae_noname-0.0410.07780.207
genusDesulfovibrio0.040.08040.213
speciesEubacterium_ramulus-0.040.08080.213
orderActinomycetales-0.040.08140.213
speciesRoseburia_inulinivorans0.040.0830.216
orderPasteurellales0.040.08420.217
familyPasteurellaceae0.040.08420.217
speciesDialister_invisus-0.040.08440.217
speciesStreptococcus_sanguinis-0.040.08560.218
speciesTuricibacter_unclassified-0.0390.08780.221
speciesAnaerotruncus_unclassified-0.0390.08810.221
speciesLachnospiraceae_bacterium_1_1_57FAA-0.0390.08810.221
classDeltaproteobacteria0.0390.08980.222
orderDesulfovibrionales0.0390.08980.222
familyDesulfovibrionaceae0.0390.08980.222
genusStreptococcus0.0390.09070.222
speciesAcidaminococcus_fermentans0.0390.09070.222
genusClostridiales_noname0.0390.0930.226
genusEnterobacter0.0390.09580.232
genusParvimonas-0.0380.09930.239
speciesParvimonas_unclassified-0.0380.09980.239
genusSolobacterium-0.0380.1020.241
speciesSolobacterium_moorei-0.0380.1020.241
speciesLeuconostoc_lactis-0.0380.1020.241
genusSutterellaceae_unclassified0.0380.1040.244
genusPeptostreptococcaceae_noname-0.0370.110.256
speciesCollinsella_tanakaei0.0370.110.256
genusAnaerotruncus-0.0370.1130.261
genusWeissella0.0360.1150.263
speciesLactobacillus_mucosae0.0360.1150.263
genusAggregatibacter0.0360.1180.269
speciesLactobacillus_vaginalis0.0360.1190.269
speciesRoseburia_intestinalis-0.0360.120.269
orderBacillales-0.0360.1210.269
genusCatenibacterium0.0360.1210.269
speciesCatenibacterium_mitsuokai0.0360.1210.269
familyStreptococcaceae0.0360.1220.27
speciesStreptococcus_parasanguinis0.0350.1280.282
speciesEubacterium_eligens0.0350.1290.283
speciesCitrobacter_unclassified0.0350.1320.288
speciesLactobacillus_plantarum-0.0340.1370.297
speciesEubacterium_limosum-0.0340.1380.297
speciesStreptococcus_lutetiensis0.0340.1380.297
genusButyricicoccus0.0340.1390.297
speciesButyricicoccus_pullicaecorum0.0340.1390.297
speciesCoprobacillus_sp_29_10.0340.140.298
speciesBacteroides_pectinophilus-0.0340.1410.298
speciesTuricibacter_sanguinis-0.0340.1430.3
speciesParaprevotella_xylaniphila0.0340.1430.3
familyLachnospiraceae-0.0340.1460.303
familyBacillales_noname-0.0340.1470.303
genusGemella-0.0340.1470.303
speciesWeissella_confusa0.0340.1470.303
genusSuccinatimonas0.0330.1510.309
speciesSuccinatimonas_hippei0.0330.1510.309
speciesCitrobacter_freundii0.0330.1520.309
genusPseudoflavonifractor-0.0330.1530.309
speciesPseudoflavonifractor_capillosus-0.0330.1530.309
orderViruses_noname-0.0330.1550.311
genusProteus0.0330.1560.312
speciesStreptococcus_phage_Sfi21-0.0330.1570.313
speciesBacteroides_sp_3_1_190.0320.1610.319
speciesLachnospiraceae_bacterium_5_1_57FAA-0.0320.1630.322
speciesClostridium_spiroforme-0.0320.1640.323
speciesLactobacillus_fermentum0.0320.170.333
familySuccinivibrionaceae0.0310.1750.341
speciesOlsenella_unclassified-0.0310.1760.342
genusPeptoniphilus-0.030.1930.373
genusButyricimonas0.030.1980.377
genusCitrobacter0.030.1980.377
speciesButyricimonas_synergistica0.030.1980.377
speciesEubacterium_ventriosum-0.030.1980.377
genusMegasphaera0.030.1990.377
speciesMethanobrevibacter_unclassified-0.030.2010.379
speciesPeptostreptococcus_anaerobius-0.0290.2080.391
genusPantoea0.0280.2210.411
speciesPantoea_unclassified0.0280.2210.411
speciesOscillibacter_unclassified-0.0280.2210.411
familyVeillonellaceae0.0280.2280.422
speciesEubacterium_cylindroides0.0270.2350.433
familyPorphyromonadaceae0.0270.240.441
speciesClostridium_citroniae0.0270.2460.45
speciesParabacteroides_merdae0.0260.2540.463
speciesLachnospiraceae_bacterium_7_1_58FAA-0.0260.2550.463
speciesBacteroides_faecis0.0260.2560.463
familyPeptostreptococcaceae-0.0260.2570.463
speciesLactobacillus_sanfranciscensis-0.0260.2580.463
speciesBifidobacterium_bifidum-0.0260.2630.47
speciesBacteroides_salanitronis0.0260.2660.472
phylumVerrucomicrobia-0.0250.2710.472
classVerrucomicrobiae-0.0250.2710.472
orderVerrucomicrobiales-0.0250.2710.472
familyVerrucomicrobiaceae-0.0250.2710.472
genusAkkermansia-0.0250.2710.472
speciesAkkermansia_muciniphila-0.0250.2710.472
genusBilophila0.0250.2750.475
speciesBacteroides_ovatus0.0250.2750.475
familyAcidaminococcaceae-0.0250.2810.48
classBacilli0.0250.2820.48
genusButyrivibrio-0.0250.2820.48
speciesEubacterium_hallii-0.0250.2830.48
genusBarnesiella-0.0250.2850.48
speciesBilophila_wadsworthia0.0250.2850.48
speciesBarnesiella_intestinihominis-0.0250.2850.48
speciesMitsuokella_multacida-0.0240.2910.489
genusMyoviridae_noname-0.0240.2930.49
familyOscillospiraceae-0.0240.30.497
genusEggerthella-0.0240.30.497
genusOscillibacter-0.0240.30.497
orderLactobacillales0.0240.3020.498
speciesParaprevotella_clara0.0240.3060.503
speciesKlebsiella_sp_MS_92_3-0.0230.310.508
genusMitsuokella-0.0230.3130.511
speciesPeptostreptococcaceae_noname_unclassified-0.0230.320.521
speciesOdoribacter_laneus-0.0220.3310.537
speciesEubacterium_sp_3_1_31-0.0220.3340.54
speciesPrevotella_bivia0.0220.340.548
speciesPorphyromonas_uenonis-0.0220.3420.549
speciesEggerthella_unclassified-0.0220.3470.555
genusCoprobacillus0.0220.3490.557
familyRikenellaceae-0.0210.3580.567
genusAlistipes-0.0210.3580.567
speciesHoldemania_unclassified-0.0210.3640.575
speciesAlistipes_putredinis-0.0210.3660.575
speciesBilophila_unclassified0.0210.3670.575
speciesMitsuokella_unclassified-0.020.3760.588
speciesAlistipes_senegalensis0.020.3790.59
genusClostridiaceae_noname-0.020.3840.592
speciesClostridiaceae_bacterium_JC118-0.020.3840.592
speciesKlebsiella_unclassified0.020.3840.592
speciesRuminococcus_sp_JC304-0.020.3920.602
speciesAnaerotruncus_colihominis-0.020.3930.602
genusRuminococcaceae_noname-0.0190.40.609
speciesRuminococcaceae_bacterium_D16-0.0190.40.609
speciesBacteroides_dorei0.0190.4180.634
genusSutterella0.0190.4220.638
genusPorphyromonas-0.0180.4240.639
speciesLactobacillus_delbrueckii-0.0180.4330.651
speciesBacteroides_sp_2_1_220.0180.4370.652
speciesClostridium_sp_L2_50-0.0180.4380.652
familyLeuconostocaceae-0.0180.4390.652
speciesKlebsiella_phage_KP360.0180.4390.652
speciesEubacterium_siraeum-0.0170.450.666
genusAcidaminococcus-0.0170.4520.667
speciesBacteroides_sp_4_3_47FAA-0.0170.4540.668
speciesPeptostreptococcus_stomatis0.0170.4610.674
speciesLactobacillus_ruminis-0.0170.4610.674
genusActinobacillus0.0170.4660.677
speciesActinobacillus_unclassified0.0170.4660.677
speciesStreptococcus_mutans0.0170.4690.679
speciesLactobacillus_gasseri0.0170.4720.681
speciesStreptococcus_vestibularis0.0170.4730.681
speciesStreptococcus_infantarius0.0160.4780.685
speciesDialister_succinatiphilus-0.0160.4790.685
speciesLachnospiraceae_bacterium_3_1_57FAA_CT1-0.0160.4870.694
genusCoriobacteriaceae_noname-0.0160.4910.698
speciesWeissella_cibaria0.0160.4950.7
speciesEnterobacter_aerogenes-0.0160.4970.7
speciesRuminococcus_torques-0.0160.4970.7
speciesOdoribacter_unclassified-0.0150.5070.712
speciesRuminococcus_lactaris-0.0150.5080.712
speciesProteus_mirabilis0.0150.5130.714
speciesOscillibacter_sp_KLE_1745-0.0150.5130.714
speciesPorphyromonas_asaccharolytica-0.0150.5140.714
genusTunalikevirus0.0150.5170.715
speciesBifidobacterium_dentium0.0150.5180.715
speciesParabacteroides_sp_D130.0150.5230.718
speciesGemella_morbillorum-0.0150.5250.718
speciesCoprococcus_sp_ART55_1-0.0150.5250.718
genusMethanosphaera0.0150.5290.72
speciesMethanosphaera_stadtmanae0.0150.5290.72
speciesCoriobacteriaceae_bacterium_phI-0.0140.5320.722
speciesBifidobacterium_catenulatum-0.0140.5450.734
speciesLactobacillus_rhamnosus-0.0140.5460.734
speciesLachnospiraceae_bacterium_2_1_46FAA0.0140.5480.734
genusPhascolarctobacterium-0.0140.5490.734
speciesPhascolarctobacterium_succinatutens-0.0140.5490.734
speciesSubdoligranulum_sp_4_3_54A2FAA-0.0140.5560.741
genusOxalobacter0.0130.570.755
speciesOxalobacter_formigenes0.0130.570.755
speciesEubacterium_dolichum-0.0130.5720.755
speciesRuminococcus_champanellensis-0.0130.5730.755
familyMyoviridae-0.0130.5810.764
familyClostridiales_noname0.0130.5840.766
speciesBifidobacterium_angulatum0.0130.5870.767
speciesDesulfovibrio_desulfuricans0.0120.5930.772
speciesErysipelotrichaceae_bacterium_5_2_54FAA-0.0120.5940.772
speciesCoprobacillus_unclassified0.0120.5950.772
speciesOscillibacter_sp_KLE_1728-0.0120.6020.778
genusAcidaminococcaceae_unclassified-0.0120.6120.785
familyPodoviridae0.0120.6140.785
genusFlavonifractor0.0120.6140.785
speciesFlavonifractor_plautii0.0120.6140.785
speciesMegasphaera_elsdenii-0.0110.6210.792
familyOxalobacteraceae0.0110.6250.795
speciesLactococcus_phage_jm2-0.0110.6270.796
phylumSynergistetes-0.0110.6340.796
classSynergistia-0.0110.6340.796
orderSynergistales-0.0110.6340.796
familySynergistaceae-0.0110.6340.796
classNegativicutes0.0110.6390.796
orderSelenomonadales0.0110.6390.796
speciesLachnospiraceae_bacterium_2_1_58FAA0.0110.6390.796
speciesBacteroides_caccae-0.0110.6460.802
speciesSlackia_piriformis0.0110.650.805
genusFaecalibacterium0.010.6550.807
speciesFaecalibacterium_prausnitzii0.010.6550.807
speciesLactobacillus_oris-0.010.6580.808
speciesLachnospiraceae_bacterium_6_1_63FAA0.010.6610.808
speciesButyrivibrio_crossotus0.010.6610.808
speciesLactobacillus_reuteri-0.010.680.829
speciesRothia_mucilaginosa0.0090.6830.831
speciesAlistipes_onderdonkii-0.0090.6910.838
familyStaphylococcaceae-0.0090.6940.839
genusRothia0.0090.6950.839
familyMicrococcaceae0.0090.70.841
familyLactobacillaceae-0.0090.7010.841
speciesHaemophilus_paraphrohaemolyticus0.0090.7020.841
speciesLactobacillus_amylovorus0.0090.7090.841
speciesEscherichia_unclassified0.0090.7090.841
speciesCoprobacillus_sp_D6-0.0080.7140.841
speciesLachnospiraceae_bacterium_1_4_56FAA-0.0080.7150.841
speciesBacteroides_eggerthii0.0080.7160.841
speciesAcidaminococcus_intestini0.0080.7180.841
genusPyramidobacter-0.0080.7190.841
genusLactobacillus-0.0080.7190.841
speciesPyramidobacter_piscolens-0.0080.7190.841
speciesEnterococcus_faecalis-0.0080.7220.841
speciesClostridium_ramosum-0.0080.7220.841
speciesAlistipes_shahii0.0080.7230.841
familyViruses_noname0.0080.7330.848
genusViruses_noname0.0080.7330.848
speciesErysipelotrichaceae_bacterium_3_1_530.0080.7390.853
speciesLactococcus_phage_phi7-0.0080.7450.858
speciesRoseburia_hominis0.0070.750.861
speciesEubacterium_biforme0.0070.7570.867
genusErysipelotrichaceae_noname-0.0070.7780.889
speciesCollinsella_intestinalis0.0060.7810.89
genusRoseburia-0.0060.7840.891
speciesLachnospiraceae_bacterium_3_1_46FAA-0.0060.7860.891
speciesLactobacillus_crispatus0.0060.7870.891
speciesAlistipes_indistinctus-0.0060.7890.891
speciesParabacteroides_sp_20_3-0.0060.7920.892
speciesClostridium_sp_ATCC_BAA_4420.0060.7960.895
speciesDorea_unclassified-0.0060.7990.896
genusPeptostreptococcus-0.0060.8010.896
speciesKlebsiella_oxytoca0.0060.8050.897
speciesHoldemania_sp_AP2-0.0060.8070.897
genusHoldemania0.0060.8080.897
speciesCollinsella_unclassified0.0060.810.897
speciesClostridium_sp_KLE_1755-0.0060.8120.898
speciesLactococcus_phage_936_sensu_lato-0.0050.8140.898
genusMethanobrevibacter-0.0050.8160.898
speciesStreptococcus_mitis_oralis_pneumoniae-0.0050.8320.913
speciesMethanobrevibacter_smithii-0.0050.8370.917
genusStaphylococcus-0.0050.840.918
speciesRuminococcus_callidus0.0050.8460.922
speciesHaemophilus_sputorum-0.0040.8530.928
genusSlackia0.0040.8550.928
speciesAlistipes_sp_HGB50.0040.870.939
speciesBacteroides_barnesiae0.0040.8720.939
speciesSutterella_wadsworthensis0.0040.8720.939
speciesAnaerostipes_unclassified-0.0040.8730.939
speciesStreptococcus_gordonii0.0040.8780.94
classMethanobacteria-0.0030.8820.94
orderMethanobacteriales-0.0030.8820.94
familyMethanobacteriaceae-0.0030.8820.94
speciesEnterobacteria_phage_HK544-0.0030.890.945
genusParasutterella-0.0030.8930.945
speciesParasutterella_excrementihominis-0.0030.8930.945
speciesBifidobacterium_breve0.0030.9010.949
speciesMegamonas_funiformis-0.0030.9030.949
genusLambdalikevirus0.0030.9060.949
speciesCoprococcus_eutactus0.0030.9110.949
speciesLactococcus_garvieae0.0030.9120.949
classErysipelotrichia-0.0030.9130.949
orderErysipelotrichales-0.0030.9130.949
familyErysipelotrichaceae-0.0030.9130.949
genusCoprobacter-0.0020.9210.953
speciesCoprobacter_fastidiosus-0.0020.9210.953
familyBurkholderiales_noname-0.0020.9350.966
phylumEuryarchaeota-0.0020.9410.97
genusBlautia0.0020.9430.97
speciesClostridium_clostridioforme-0.0010.9640.986
speciesBacteroides_uniformis0.0010.9650.986
speciesStreptococcus_australis0.0010.9670.986
speciesAlistipes_unclassified-0.0010.9670.986
genusBurkholderiales_noname-0.0010.980.995
speciesBurkholderiales_bacterium_1_1_47-0.0010.980.995
speciesErysipelotrichaceae_bacterium_2_2_44A0.00.9830.996
speciesMegasphaera_unclassified0.00.991.0
speciesHoldemania_filiformis0.00.9951.0
genusMorganella0.00.9981.0
speciesMorganella_morganii0.00.9981.0
speciesLachnospiraceae_bacterium_9_1_43BFAA0.00.9981.0
speciesAlistipes_finegoldii0.01.01.0
Click on arrows to sort table data. Shift+click to sort by multiple columns.

Association of query gene abundance with clinical phenotypes:

Boxplots:


Statistics:

pheno country case_n ctrl_n case_mean ctrl_mean pvalue rank percentile
Type II diabetesDenmark752770.001177311863230.0006171250325910.0191449397687519117.0158
Crohns diseaseSpain17660.00.001000658673260.09172198962961350644.9077
Ulcerative colitisSpain78660.0002006100478060.001000658673260.107454527627736024.2792
Rheumatoid arthritisChina127980.0003276205103750.0006233287398720.117690022281599920.0053
Type II diabetesSweden53920.0002585391463020.0005615094709410.211956558263752525.4826
Colorectal cancerAustria64350.001729894324980.0001076794386170.3214983799961304344.1298
ObesityDenmark1691230.0009339605288870.0001566933014950.5412764999142037967.0119
Type II diabetesChina1831850.002960241142980.004432309882320.5985456276842283075.4486
Liver cirrhosisChina1201140.008768658817690.005152651174220.6778538979842647688.9382
Click on arrows to sort table data. Shift+click to sort by multiple columns.

Citation:

Nayfach S, Fischbach MA, Pollard KS. MetaQuery: a web server for rapid annotation and quantitative analysis of specific genes in the human gut microbiome. Bioinformatics 2015;31(14). doi:10.1093/bioinformatics/btv382