MetaQuery: quantitative analysis of the human gut microbiome

Results

Estimated gene abundances and results from statistical analyses

Job details:

Submission date: 2021-01-08 06:16:39 PST
Job id & description: 2351, Decarboxylases
Query type: protein
Count queries & homologs: 1, 15
Min % identity & max e-value: 30%, 1e-5
Min % query & target coverage: 70%, 70%

Click here to download results

Table of contents:


Gut microbiome genes homologous to your query gene:

query_id target_id status kegg eggnog phylum genus query_cov target_cov percent_identity
sp|Q9Y600|CSAD_HUMAN972814CompleteK13745COG0076ProteobacteriaKlebsiella98.5897.7731.35
sp|Q9Y600|CSAD_HUMAN987209CompleteK13745COG0076ProteobacteriaEnterobacter98.5898.3730.16
sp|Q9Y600|CSAD_HUMAN988111CompleteK13745COG0076ProteobacteriaKlebsiella98.5898.3730.56
sp|Q9Y600|CSAD_HUMAN997380CompleteK13745COG0076ProteobacteriaEnterobacter93.9195.4930.63
sp|Q9Y600|CSAD_HUMAN977962CompleteK13745COG0076ProteobacteriaEnterobacter93.9194.7230.63
sp|Q9Y600|CSAD_HUMAN997441CompleteK13745COG0076ProteobacteriaEnterobacter93.9195.4930.42
sp|Q9Y600|CSAD_HUMAN996800CompleteK13745COG0076ProteobacteriaEnterobacter93.9195.4930.21
sp|Q9Y600|CSAD_HUMAN988211CompleteK13745COG0076ProteobacteriaCitrobacter79.1181.8434.15
sp|Q9Y600|CSAD_HUMAN1534424Lack 5'-endK01593COG0076FirmicutesBlautia84.5897.3330.48
sp|Q9Y600|CSAD_HUMAN1059168CompleteK01593COG0076Firmicutesunknown78.379.6630.08
sp|Q9Y600|CSAD_HUMAN1039752CompleteK01593COG0076unknownunknown78.379.1730.33
sp|Q9Y600|CSAD_HUMAN912402CompleteK01593COG0076Firmicutesunknown80.5377.2330.25
sp|Q9Y600|CSAD_HUMAN1051560CompleteK01593COG0076FirmicutesBlautia74.2474.930.43
sp|Q9Y600|CSAD_HUMAN989288CompleteK01593COG0076unknownunknown78.0977.9130.18
sp|Q9Y600|CSAD_HUMAN947285Lack 3'-endK13745COG0076ProteobacteriaHaemophilus71.472.9530.35
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The abundance of your query across gut microbiome samples:




The prevalence of your query across gut microbiome samples:




Taxonomic groups correlated with your query gene:

tax_level tax_name spearman_rho pvalue qvalue
genusKlebsiella0.7141.71e-2918.07e-289
speciesKlebsiella_pneumoniae0.6842.32e-2585.48e-256
orderEnterobacteriales0.6031.45e-1851.71e-183
familyEnterobacteriaceae0.6031.45e-1851.71e-183
classGammaproteobacteria0.5941.08e-1781.02e-176
genusEnterobacter0.5421.8e-1431.42e-141
speciesEnterobacter_cloacae0.5351.09e-1387.35e-137
phylumProteobacteria0.4941.71e-1151.01e-113
genusEscherichia0.4675.12e-1022.69e-100
speciesEscherichia_coli0.4382.45e-881.16e-86
speciesRuminococcus_gnavus0.4121.15e-774.93e-76
genusCitrobacter0.4085.85e-762.3e-74
speciesCitrobacter_unclassified0.4051.49e-745.41e-73
speciesCitrobacter_freundii0.4037.38e-742.49e-72
speciesSubdoligranulum_unclassified-0.3992.6e-728.18e-71
genusSubdoligranulum-0.3941.47e-704.34e-69
phylumFusobacteria0.3853.18e-677.9e-66
classFusobacteriia0.3853.18e-677.9e-66
orderFusobacteriales0.3853.18e-677.9e-66
familyFusobacteriaceae0.3831.97e-664.65e-65
genusFusobacterium0.3798.88e-652e-63
speciesClostridium_nexile0.3581.19e-572.55e-56
speciesLachnospiraceae_bacterium_9_1_43BFAA0.3473.83e-547.86e-53
speciesEscherichia_unclassified0.3452.03e-533.99e-52
speciesEubacterium_siraeum-0.341.14e-512.15e-50
speciesKlebsiella_oxytoca0.3392.16e-513.92e-50
speciesAnaerotruncus_unclassified-0.3169.83e-451.72e-43
speciesKlebsiella_unclassified0.3081.91e-423.22e-41
speciesCoprobacillus_unclassified0.3021.28e-402.08e-39
speciesLachnospiraceae_bacterium_7_1_58FAA-0.2971.61e-392.53e-38
genusCoprococcus-0.291.51e-372.3e-36
speciesLachnospiraceae_bacterium_6_1_63FAA0.2892.71e-374e-36
genusCoprobacillus0.2876.77e-379.68e-36
speciesClostridium_ramosum0.2838.85e-361.23e-34
genusButyrivibrio-0.284.77e-356.43e-34
familyRuminococcaceae-0.2763.96e-345.19e-33
genusPantoea0.2719e-331.12e-31
speciesPantoea_unclassified0.2719e-331.12e-31
speciesCoprococcus_catus-0.271.36e-321.65e-31
genusWeissella0.2684.54e-325.36e-31
speciesClostridium_bolteae0.2635.36e-316.17e-30
speciesVeillonella_parvula0.2612.08e-302.34e-29
genusVeillonella0.2571.62e-291.78e-28
speciesFusobacterium_ulcerans0.254.09e-284.39e-27
speciesBifidobacterium_adolescentis-0.255.51e-285.78e-27
speciesFusobacterium_mortiferum0.2498.48e-288.7e-27
speciesClostridium_leptum-0.2481.16e-271.16e-26
genusAnaerotruncus-0.2481.27e-271.25e-26
speciesCoprococcus_comes-0.2471.69e-271.63e-26
speciesClostridium_perfringens0.2464.03e-273.8e-26
speciesWeissella_confusa0.2448.29e-277.67e-26
familyBacteroidales_noname-0.2448.96e-277.83e-26
genusBacteroidales_noname-0.2448.96e-277.83e-26
speciesBacteroidales_bacterium_ph8-0.2448.96e-277.83e-26
speciesEubacterium_ramulus-0.2449.24e-277.93e-26
speciesMegasphaera_micronuciformis0.2431.28e-261.08e-25
speciesDorea_longicatena-0.2431.8e-261.49e-25
genusPseudoflavonifractor-0.2398.64e-266.91e-25
speciesPseudoflavonifractor_capillosus-0.2398.64e-266.91e-25
phylumVerrucomicrobia-0.2363.7e-252.69e-24
classVerrucomicrobiae-0.2363.7e-252.69e-24
orderVerrucomicrobiales-0.2363.7e-252.69e-24
familyVerrucomicrobiaceae-0.2363.7e-252.69e-24
genusAkkermansia-0.2363.7e-252.69e-24
speciesAkkermansia_muciniphila-0.2363.7e-252.69e-24
genusBarnesiella-0.2332.06e-241.45e-23
speciesBarnesiella_intestinihominis-0.2332.06e-241.45e-23
speciesFusobacterium_nucleatum0.2314.31e-242.99e-23
speciesWeissella_cibaria0.2299.43e-246.45e-23
speciesClostridium_symbiosum0.2291.02e-236.88e-23
genusDorea-0.2281.65e-231.1e-22
speciesVeillonella_unclassified0.2263.54e-232.32e-22
speciesEnterobacter_aerogenes0.2265.43e-233.51e-22
speciesMegamonas_unclassified0.2249.91e-236.32e-22
genusMegamonas0.2231.41e-228.87e-22
speciesEubacterium_hallii-0.2231.43e-228.88e-22
speciesAlistipes_senegalensis-0.2222.91e-221.78e-21
speciesClostridiales_bacterium_1_7_47FAA0.225.34e-223.23e-21
speciesLachnospiraceae_bacterium_3_1_46FAA-0.226.08e-223.63e-21
speciesEubacterium_rectale-0.2199.4e-225.55e-21
speciesStreptococcus_mitis_oralis_pneumoniae0.2181.63e-219.5e-21
speciesCollinsella_aerofaciens-0.2172.6e-211.5e-20
speciesHaemophilus_parainfluenzae0.2163.88e-212.21e-20
speciesLactobacillus_salivarius0.2164.07e-212.29e-20
orderPasteurellales0.2147.83e-214.3e-20
familyPasteurellaceae0.2147.83e-214.3e-20
genusHaemophilus0.2149.27e-215.03e-20
orderClostridiales-0.2122.25e-201.2e-19
classClostridia-0.2122.26e-201.2e-19
speciesLactococcus_garvieae0.2112.62e-201.37e-19
speciesStreptococcus_anginosus0.213.6e-201.87e-19
speciesMitsuokella_unclassified-0.2095.83e-202.99e-19
genusClostridium0.2096.41e-203.25e-19
genusOdoribacter-0.2089.39e-204.71e-19
speciesPrevotella_buccae0.2071.43e-197.1e-19
speciesRoseburia_hominis-0.2071.68e-198.26e-19
speciesClostridium_hathewayi0.2071.76e-198.56e-19
familyClostridiaceae0.2062.14e-191.03e-18
genusFlavonifractor0.2053.15e-191.49e-18
speciesFlavonifractor_plautii0.2053.15e-191.49e-18
speciesMethanobrevibacter_smithii-0.2053.93e-191.84e-18
genusEubacterium-0.2045.29e-192.45e-18
familyEubacteriaceae-0.2045.49e-192.52e-18
genusCollinsella-0.2037.27e-193.3e-18
genusMitsuokella-0.2039.27e-194.17e-18
speciesEggerthella_unclassified0.2011.7e-187.57e-18
speciesFusobacterium_varium0.22.6e-181.15e-17
genusMegasphaera0.1994.32e-181.89e-17
speciesVeillonella_dispar0.1985.44e-182.36e-17
speciesClostridium_citroniae0.1986.63e-182.84e-17
speciesOdoribacter_splanchnicus-0.1961.02e-174.34e-17
familyLeuconostocaceae0.1961.05e-174.42e-17
genusMethanobrevibacter-0.1961.15e-174.8e-17
classMethanobacteria-0.1961.34e-175.45e-17
orderMethanobacteriales-0.1961.34e-175.45e-17
familyMethanobacteriaceae-0.1961.34e-175.45e-17
genusEnterococcus0.1951.52e-176.13e-17
familyEnterococcaceae0.1951.64e-176.56e-17
speciesAnaerostipes_unclassified0.1951.8e-177.14e-17
familyBacillales_noname0.1942.29e-178.93e-17
genusGemella0.1942.29e-178.93e-17
genusEggerthella0.1942.39e-179.25e-17
familyRikenellaceae-0.1934.12e-171.57e-16
genusAlistipes-0.1934.12e-171.57e-16
speciesBacteroides_fragilis0.1924.63e-171.75e-16
speciesDorea_formicigenerans-0.1925.52e-172.07e-16
classBacilli0.1925.97e-172.22e-16
phylumEuryarchaeota-0.1926.56e-172.42e-16
orderLactobacillales0.1917.53e-172.76e-16
speciesVeillonella_atypica0.1919.22e-173.35e-16
speciesLachnospiraceae_bacterium_2_1_46FAA0.1891.99e-167.17e-16
speciesButyrivibrio_unclassified-0.1864.91e-161.76e-15
genusCoprobacter-0.1856.22e-162.19e-15
speciesCoprobacter_fastidiosus-0.1856.22e-162.19e-15
speciesAlistipes_shahii-0.1831.54e-155.38e-15
speciesBacteroides_uniformis-0.1831.63e-155.66e-15
speciesStreptococcus_australis0.184.09e-151.41e-14
genusAggregatibacter0.185.07e-151.73e-14
orderBacillales0.185.13e-151.74e-14
speciesStreptococcus_infantarius0.1795.53e-151.86e-14
speciesLachnospiraceae_bacterium_2_1_58FAA0.1771.09e-143.65e-14
speciesC2likevirus_unclassified-0.1771.22e-144.06e-14
speciesButyrivibrio_crossotus-0.1752.18e-147.2e-14
genusC2likevirus-0.1752.66e-148.72e-14
genusRuminococcaceae_noname-0.1752.94e-149.5e-14
speciesRuminococcaceae_bacterium_D16-0.1752.94e-149.5e-14
speciesClostridium_clostridioforme0.1743.62e-141.16e-13
speciesStreptococcus_salivarius0.1734.44e-141.42e-13
speciesBifidobacterium_dentium0.1734.74e-141.5e-13
familyStreptococcaceae0.1711.15e-133.62e-13
familyOscillospiraceae-0.171.41e-134.38e-13
genusOscillibacter-0.171.41e-134.38e-13
familyMyoviridae0.1682.36e-137.28e-13
genusPrevotella0.1674.19e-131.28e-12
speciesBacteroides_plebeius0.1664.32e-131.32e-12
speciesSutterella_wadsworthensis-0.1664.47e-131.35e-12
speciesBacteroides_stercoris0.1664.76e-131.43e-12
speciesLeuconostoc_lactis0.1631.33e-123.97e-12
speciesAggregatibacter_segnis0.1621.74e-125.17e-12
speciesCampylobacter_concisus0.1622.09e-126.17e-12
genusSolobacterium0.1612.26e-126.58e-12
speciesSolobacterium_moorei0.1612.26e-126.58e-12
genusStreptococcus0.1612.35e-126.8e-12
genusSutterella-0.1612.74e-127.89e-12
speciesCoprococcus_sp_ART55_1-0.1594e-121.14e-11
speciesRuminococcus_obeum-0.1594.59e-121.31e-11
phylumFirmicutes-0.1594.74e-121.34e-11
genusClostridiales_noname0.1595.14e-121.44e-11
speciesPrevotella_copri0.1586.49e-121.81e-11
speciesAnaerostipes_hadrus-0.1577.59e-122.11e-11
familyPorphyromonadaceae-0.1561.04e-112.87e-11
genusPyramidobacter0.1561.13e-113.08e-11
speciesPyramidobacter_piscolens0.1561.13e-113.08e-11
speciesKlebsiella_sp_MS_92_30.1561.23e-113.34e-11
speciesOscillibacter_unclassified-0.1561.27e-113.43e-11
speciesBlautia_producta0.1551.46e-113.92e-11
genusAdlercreutzia-0.1542e-115.3e-11
speciesAdlercreutzia_equolifaciens-0.1542e-115.3e-11
speciesAlistipes_indistinctus-0.1532.57e-116.78e-11
genusMorganella0.1523.42e-118.92e-11
speciesMorganella_morganii0.1523.42e-118.92e-11
speciesEnterococcus_faecalis0.1524.36e-111.13e-10
speciesCoprococcus_eutactus-0.1514.6e-111.19e-10
phylumSynergistetes0.1515.52e-111.39e-10
classSynergistia0.1515.52e-111.39e-10
orderSynergistales0.1515.52e-111.39e-10
familySynergistaceae0.1515.52e-111.39e-10
speciesLactobacillus_mucosae0.156.47e-111.62e-10
genusActinobacillus0.1498.25e-112.05e-10
speciesActinobacillus_unclassified0.1498.25e-112.05e-10
familyPeptostreptococcaceae0.1499.13e-112.26e-10
speciesEubacterium_ventriosum-0.1481.34e-103.29e-10
genusCampylobacter0.1471.94e-104.74e-10
speciesOlsenella_unclassified-0.1462.05e-104.99e-10
genusRuminococcus-0.1462.25e-105.45e-10
speciesHaemophilus_paraphrohaemolyticus0.1453.33e-108.02e-10
genusPeptostreptococcus0.1443.59e-108.6e-10
speciesLachnospiraceae_bacterium_1_4_56FAA0.1444.14e-109.87e-10
speciesPrevotella_stercorea0.1435.9e-101.4e-09
familyCampylobacteraceae0.1427.32e-101.73e-09
familySiphoviridae-0.1418.87e-102.08e-09
speciesAlistipes_putredinis-0.141.26e-092.94e-09
orderCoriobacteriales-0.1391.4e-093.24e-09
familyCoriobacteriaceae-0.1391.4e-093.24e-09
classEpsilonproteobacteria0.1391.45e-093.32e-09
orderCampylobacterales0.1391.45e-093.32e-09
speciesBifidobacterium_pseudocatenulatum0.1372.46e-095.61e-09
speciesRuminococcus_sp_5_1_39BFAA-0.1363.71e-098.42e-09
genusPeptostreptococcaceae_noname0.1354.79e-091.08e-08
speciesMegamonas_rupellensis0.1346.15e-091.38e-08
speciesStreptococcus_sanguinis0.1346.28e-091.4e-08
speciesPeptostreptococcus_stomatis0.1337.23e-091.61e-08
speciesMegamonas_funiformis0.1337.79e-091.73e-08
speciesEnterococcus_faecium0.1329.41e-092.08e-08
speciesClostridium_bartlettii0.1311.17e-082.57e-08
speciesMegamonas_hypermegale0.1311.23e-082.69e-08
speciesAlistipes_finegoldii-0.131.6e-083.48e-08
speciesAlistipes_onderdonkii-0.1282.6e-085.63e-08
speciesRuminococcus_lactaris-0.1282.73e-085.88e-08
speciesStreptococcus_thermophilus-0.1283.06e-086.57e-08
genusProteus0.1264.87e-081.04e-07
genusOlsenella-0.1247.57e-081.61e-07
genusOxalobacter-0.1248.02e-081.69e-07
speciesOxalobacter_formigenes-0.1248.02e-081.69e-07
familyOxalobacteraceae-0.1248.35e-081.75e-07
speciesLachnospiraceae_bacterium_8_1_57FAA-0.1221.08e-072.26e-07
speciesAlistipes_sp_AP11-0.1221.25e-072.6e-07
genusBlautia0.1221.26e-072.61e-07
speciesStreptococcus_lutetiensis0.1211.55e-073.19e-07
speciesMethanobrevibacter_unclassified-0.122.16e-074.43e-07
familyClostridiales_noname0.1192.62e-075.35e-07
speciesStreptococcus_gordonii0.1182.91e-075.92e-07
familyLactobacillaceae0.1182.92e-075.92e-07
speciesEubacterium_biforme-0.1173.56e-077.18e-07
genusLactobacillus0.1174.08e-078.19e-07
familyVeillonellaceae0.1155.93e-071.19e-06
genusCatenibacterium-0.1156.25e-071.24e-06
speciesCatenibacterium_mitsuokai-0.1156.25e-071.24e-06
speciesProteus_mirabilis0.1156.38e-071.26e-06
speciesBacteroides_thetaiotaomicron0.1111.45e-062.85e-06
speciesLactococcus_phage_P680-0.1111.54e-063.02e-06
speciesRuminococcus_champanellensis-0.1111.57e-063.06e-06
speciesLachnospiraceae_bacterium_5_1_57FAA0.1092.36e-064.58e-06
speciesLactobacillus_fermentum0.1082.83e-065.47e-06
speciesClostridium_sp_L2_50-0.1054.93e-069.44e-06
phylumActinobacteria-0.1054.94e-069.44e-06
classActinobacteria-0.1054.94e-069.44e-06
speciesEnterobacteria_phage_HK5440.1046.43e-061.22e-05
speciesRoseburia_unclassified-0.1037.74e-061.47e-05
speciesRuminococcus_bromii-0.1038.2e-061.55e-05
speciesEubacterium_cylindroides-0.1038.42e-061.58e-05
speciesEubacterium_dolichum0.1029.6e-061.8e-05
speciesPropionibacterium_freudenreichii-0.1021.04e-051.94e-05
genusMyoviridae_noname0.1021.06e-051.97e-05
genusSiphoviridae_noname-0.1021.08e-052e-05
speciesBacteroides_coprocola0.1011.26e-052.32e-05
speciesParaprevotella_xylaniphila-0.1011.27e-052.33e-05
genusFaecalibacterium-0.1011.32e-052.41e-05
speciesFaecalibacterium_prausnitzii-0.1011.32e-052.41e-05
genusBifidobacterium-0.0991.69e-053.07e-05
speciesDesulfovibrio_desulfuricans-0.0991.93e-053.49e-05
speciesHaemophilus_sputorum0.0982.25e-054.05e-05
speciesBacteroides_oleiciplenus0.0982.35e-054.22e-05
speciesRothia_mucilaginosa0.0972.41e-054.31e-05
genusTunalikevirus0.0972.68e-054.77e-05
speciesBifidobacterium_animalis-0.0963.02e-055.36e-05
genusDesulfovibrio-0.0963.34e-055.9e-05
orderBifidobacteriales-0.0963.5e-056.14e-05
familyBifidobacteriaceae-0.0963.5e-056.14e-05
speciesLactobacillus_sanfranciscensis0.0944.29e-057.5e-05
speciesMegasphaera_unclassified0.0935.4e-059.41e-05
speciesOdoribacter_unclassified-0.0935.98e-050.000104
speciesBacteroides_intestinalis0.0926.21e-050.000107
speciesBlautia_hydrogenotrophica-0.0917.95e-050.000137
genusLambdalikevirus0.0918.18e-050.00014
speciesStreptococcus_vestibularis0.099.04e-050.000155
speciesLactobacillus_plantarum0.099.48e-050.000162
speciesKlebsiella_phage_KP360.099.91e-050.000168
speciesEggerthella_lenta0.099.96e-050.000168
speciesBifidobacterium_longum-0.0890.0001070.00018
speciesBacteroides_xylanisolvens0.0890.0001170.000197
speciesParaprevotella_unclassified-0.0890.0001210.000203
speciesBifidobacterium_catenulatum-0.0880.0001370.000228
familyBacteroidaceae0.0880.0001430.000237
genusBacteroides0.0880.0001430.000237
speciesGemella_morbillorum0.0880.0001440.000238
familyPropionibacteriaceae-0.0870.0001550.000254
speciesStreptococcus_pasteurianus0.0870.0001550.000254
genusParaprevotella-0.0870.0001630.000266
speciesBacteroides_salanitronis-0.0860.0001890.000308
speciesOscillibacter_sp_KLE_1745-0.0850.0002320.000376
speciesAlistipes_sp_HGB5-0.0850.0002340.000378
speciesBacteroides_pectinophilus-0.0850.0002490.000401
speciesLactobacillus_crispatus0.0840.0002610.000419
speciesClostridium_asparagiforme0.0830.0003510.000562
familyMicrococcaceae0.0820.0003590.000572
genusRothia0.0820.0003810.000605
speciesBacteroides_massiliensis0.0820.0003850.00061
speciesBacteroides_salyersiae0.0820.0003950.000624
speciesLachnospiraceae_bacterium_5_1_63FAA-0.0810.0004320.00068
genusPhascolarctobacterium-0.080.0005590.000874
speciesPhascolarctobacterium_succinatutens-0.080.0005590.000874
speciesParabacteroides_merdae-0.080.0005760.000897
speciesLactobacillus_oris0.0790.0006650.00103
speciesParabacteroides_sp_D13-0.0780.0007190.00111
speciesCollinsella_intestinalis0.0780.0007230.00112
familyActinomycetaceae0.0780.0007880.00121
speciesBacteroides_dorei-0.0770.0008260.00127
speciesLactobacillus_vaginalis0.0770.0008420.00129
orderActinomycetales0.0770.0008470.00129
speciesParaprevotella_clara-0.0770.0009240.0014
genusActinomyces0.0750.001230.00186
speciesLactobacillus_gasseri0.0740.00130.00196
speciesLactobacillus_acidophilus-0.0740.001340.00201
speciesEubacterium_eligens-0.0740.001460.00219
genusDialister-0.0730.001470.0022
speciesBacteroides_sp_3_1_190.0730.001530.00228
speciesClostridium_sp_ATCC_BAA_4420.0730.001620.0024
speciesStreptococcus_mutans0.0730.001680.00249
speciesLachnospiraceae_bacterium_1_1_57FAA0.0720.001720.00254
speciesDesulfovibrio_piger-0.0720.001740.00256
familyAcidaminococcaceae-0.0720.00180.00264
orderCaudovirales-0.0720.001920.00281
genusParabacteroides-0.0710.002130.00309
speciesCollinsella_tanakaei0.0710.002130.00309
genusPropionibacterium-0.0710.002160.00312
genusMethanosphaera-0.0710.002170.00312
speciesMethanosphaera_stadtmanae-0.0710.002170.00312
speciesBacteroides_finegoldii0.0710.002280.00327
genusButyricicoccus0.070.002310.00329
speciesButyricicoccus_pullicaecorum0.070.002310.00329
speciesHoldemania_filiformis-0.070.002640.00375
speciesLachnospiraceae_bacterium_3_1_57FAA_CT1-0.0690.002790.00395
genusAnaerostipes-0.0690.002910.00411
speciesHoldemania_sp_AP20.0680.003330.00469
speciesBacteroides_cellulosilyticus-0.0670.003630.0051
speciesDialister_invisus-0.0660.004190.00587
speciesErysipelotrichaceae_bacterium_21_3-0.0660.00440.00614
genusAcidaminococcaceae_unclassified-0.0660.004490.00625
genusLeuconostoc0.0650.00480.00666
familyClostridiales_Family_XI_Incertae_Sedis0.0640.005550.00768
speciesMegasphaera_elsdenii0.0620.006860.00947
classNegativicutes0.0610.008070.0111
orderSelenomonadales0.0610.008070.0111
familyPrevotellaceae0.0610.008310.0114
familySutterellaceae-0.060.00960.0131
speciesStreptococcus_parasanguinis0.060.009730.0132
phylumViruses_noname-0.060.010.0135
classViruses_noname-0.060.010.0135
speciesOscillibacter_sp_KLE_1728-0.0590.01010.0136
orderBurkholderiales-0.0580.01280.0172
speciesLactococcus_phage_936_sensu_lato-0.0570.0140.0188
familyLachnospiraceae-0.0560.01620.0217
speciesOdoribacter_laneus-0.0550.01820.0242
speciesMitsuokella_multacida-0.0550.01820.0242
speciesBacteroides_barnesiae-0.0540.01850.0245
speciesErysipelotrichaceae_bacterium_2_2_44A0.0540.01880.0249
speciesBifidobacterium_angulatum-0.0540.02060.0272
genusHoldemania-0.0530.02150.0283
speciesParvimonas_unclassified0.0530.02270.0298
genusParvimonas0.0530.02290.0299
speciesHoldemania_unclassified-0.0510.02680.0349
speciesBacteroides_sp_2_1_22-0.050.0290.0377
familyViruses_noname0.050.03070.0397
genusViruses_noname0.050.03070.0397
classBetaproteobacteria-0.050.03220.0415
speciesLactobacillus_ruminis-0.0490.03260.0419
speciesPorphyromonas_uenonis0.0490.03350.043
speciesAcidaminococcus_intestini0.0490.03380.0432
genusLactococcus0.0480.03680.0469
speciesBacteroides_nordii0.0470.04140.0527
speciesBacteroides_fluxus0.0460.04650.059
speciesClostridium_spiroforme-0.0450.0530.0671
speciesErysipelotrichaceae_bacterium_3_1_530.0450.05340.0674
speciesEubacterium_sp_3_1_310.0440.05590.0704
speciesLactococcus_phage_jm2-0.0440.05890.0739
speciesErysipelotrichaceae_bacterium_6_1_45-0.0440.05910.074
familyStaphylococcaceae0.0430.06430.0803
classBacteroidia0.0420.06830.0847
orderBacteroidales0.0420.06830.0847
phylumBacteroidetes0.0420.06840.0847
speciesParabacteroides_goldsteinii0.0420.07040.087
speciesAlistipes_unclassified-0.0410.07510.0926
speciesBifidobacterium_breve0.040.08430.104
speciesPrevotella_bivia0.0390.08810.108
speciesEubacterium_limosum0.0380.1030.126
speciesLactococcus_phage_phi7-0.0370.1090.133
speciesPeptostreptococcus_anaerobius0.0370.1120.136
speciesRuminococcus_callidus-0.0370.1120.136
speciesLactobacillus_amylovorus0.0370.1130.137
speciesBilophila_unclassified0.0360.1160.14
orderAeromonadales0.0360.1210.146
speciesSlackia_piriformis-0.0360.1230.148
speciesBacteroides_faecis0.0340.1370.164
familySuccinivibrionaceae-0.0340.1390.166
genusPeptoniphilus0.0340.1410.168
speciesBilophila_wadsworthia0.0340.1410.168
genusBilophila0.0340.1470.174
speciesSubdoligranulum_sp_4_3_54A2FAA-0.0330.1510.179
speciesBacteroides_sp_1_1_6-0.0330.1560.184
genusButyricimonas-0.0330.1590.187
speciesButyricimonas_synergistica-0.0330.1590.187
speciesBacteroides_coprophilus0.0320.1640.192
genusAcidaminococcus0.0320.1680.196
genusStaphylococcus0.0320.1690.197
speciesClostridium_sp_KLE_17550.0310.1770.206
genusSuccinatimonas-0.0310.1860.215
speciesSuccinatimonas_hippei-0.0310.1860.215
speciesBacteroides_sp_4_3_47FAA0.0290.2070.239
speciesLactobacillus_reuteri0.0290.210.242
speciesRoseburia_intestinalis-0.0280.2320.266
speciesEggerthella_sp_1_3_56FAA0.0270.2370.272
genusGordonibacter-0.0270.2450.279
speciesGordonibacter_pamelaeae-0.0270.2450.279
speciesBacteroides_clarus0.0270.2460.28
genusTuricibacter-0.0270.2470.28
orderViruses_noname-0.0260.2520.285
speciesRuminococcus_torques-0.0260.2530.286
genusSutterellaceae_unclassified0.0260.2540.286
speciesAcidaminococcus_fermentans0.0260.2620.294
speciesSutterella_parvirubra0.0250.2760.309
speciesBacteroides_ovatus0.0250.2890.323
speciesParabacteroides_sp_20_3-0.0240.2940.328
speciesBacteroides_caccae-0.0230.3140.35
genusLachnospiraceae_noname0.0220.3450.383
genusPorphyromonas-0.0220.3460.383
speciesBacteroides_eggerthii0.0210.3590.397
familyPodoviridae0.020.3830.422
speciesTuricibacter_unclassified-0.020.3840.422
speciesParabacteroides_unclassified0.020.3970.436
speciesErysipelotrichaceae_bacterium_5_2_54FAA0.0190.4060.445
speciesPorphyromonas_asaccharolytica-0.0180.4460.487
speciesAnaerotruncus_colihominis0.0170.4610.503
speciesDialister_succinatiphilus-0.0170.4650.506
familyBurkholderiales_noname0.0170.4670.507
genusBurkholderiales_noname0.0170.4750.513
speciesBurkholderiales_bacterium_1_1_470.0170.4750.513
orderPseudomonadales0.0160.5030.542
speciesLactobacillus_delbrueckii-0.0130.5710.614
speciesBifidobacterium_bifidum-0.0130.5780.62
speciesStreptococcus_phage_Sfi210.0130.580.621
speciesTuricibacter_sanguinis-0.0110.6190.661
speciesLactobacillus_casei_paracasei-0.0110.640.682
speciesLactococcus_lactis-0.010.6690.711
genusSlackia-0.010.6710.712
speciesBacteroides_vulgatus-0.010.6750.714
classErysipelotrichia0.0090.6970.733
orderErysipelotrichales0.0090.6970.733
familyErysipelotrichaceae0.0090.6970.733
speciesDorea_unclassified0.0090.7070.742
genusErysipelotrichaceae_noname-0.0090.710.743
genusParasutterella-0.0080.7240.754
speciesParasutterella_excrementihominis-0.0080.7240.754
speciesCoprobacillus_sp_29_10.0080.7430.772
speciesPeptostreptococcaceae_noname_unclassified0.0080.7440.772
speciesRuminococcus_sp_JC304-0.0070.7540.78
genusRoseburia-0.0060.8030.829
speciesLactobacillus_rhamnosus0.0060.810.835
speciesParabacteroides_johnsonii0.0050.8190.842
speciesCoriobacteriaceae_bacterium_phI-0.0050.8250.847
genusCoriobacteriaceae_noname-0.0040.8630.882
speciesCoprobacillus_sp_D6-0.0040.8630.882
speciesAcidaminococcus_unclassified-0.0040.8750.892
classDeltaproteobacteria0.0030.8870.896
orderDesulfovibrionales0.0030.8870.896
familyDesulfovibrionaceae0.0030.8870.896
speciesRoseburia_inulinivorans-0.0030.8870.896
genusClostridiaceae_noname-0.0020.9190.925
speciesClostridiaceae_bacterium_JC118-0.0020.9190.925
speciesLactococcus_phage_bIL67-0.0020.9250.929
speciesParabacteroides_distasonis0.0020.9290.931
speciesCollinsella_unclassified-0.0010.9580.958
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Association of query gene abundance with clinical phenotypes:

Boxplots:


Statistics:

pheno country case_n ctrl_n case_mean ctrl_mean pvalue rank percentile
Liver cirrhosisChina1201140.01554827644670.001759100227822.11562098593e-0722637.60187
Crohns diseaseSpain17660.02166395322650.001023602739123.43395526009e-0512924.29593
Type II diabetesDenmark752770.0003834548013190.0004296252326840.0107699178813442814.5147
Rheumatoid arthritisChina127980.009065988654710.007852430518250.22690978862982932.7775
Type II diabetesSweden53920.001668390226370.0003221241794650.253400819022862629.211
Colorectal cancerAustria64350.006045272747730.006859154169150.2967901457851186740.1509
ObesityDenmark1691230.0005115418296270.001253761973520.4971481682531924663.2863
Type II diabetesChina1831850.006099271192760.004713871038420.5391183917682178471.9918
Ulcerative colitisSpain78660.0009424398525310.001023602739120.879060907892751990.7798
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Citation:

Nayfach S, Fischbach MA, Pollard KS. MetaQuery: a web server for rapid annotation and quantitative analysis of specific genes in the human gut microbiome. Bioinformatics 2015;31(14). doi:10.1093/bioinformatics/btv382