MetaQuery: quantitative analysis of the human gut microbiome

Results

Estimated gene abundances and results from statistical analyses

Job details:

Submission date: 2021-01-20 07:40:34 PST
Job id & description: 2358, yhhQ
Query type: protein
Count queries & homologs: 1, 41
Min % identity & max e-value: 30%, 1e-5
Min % query & target coverage: 70%, 70%

Click here to download results

Table of contents:


Gut microbiome genes homologous to your query gene:

query_id target_id status kegg eggnog phylum genus query_cov target_cov percent_identity
gnl|ECOLI|EG12217-MONOMER4238159CompleteK09125COG1738ProteobacteriaEscherichia100.0100.099.55
gnl|ECOLI|EG12217-MONOMER4241659CompleteK09125COG1738ProteobacteriaEscherichia100.0100.099.1
gnl|ECOLI|EG12217-MONOMER4205060Lack 5'-endK09125COG1738ProteobacteriaEscherichia100.099.199.1
gnl|ECOLI|EG12217-MONOMER4253834CompleteK09125COG1738ProteobacteriaEscherichia100.0100.096.83
gnl|ECOLI|EG12217-MONOMER4253768CompleteK09125COG1738ProteobacteriaCitrobacter100.0100.094.12
gnl|ECOLI|EG12217-MONOMER3867552CompleteK09125COG1738ProteobacteriaCitrobacter100.092.4793.67
gnl|ECOLI|EG12217-MONOMER4250534CompleteK09125COG1738ProteobacteriaEnterobacter100.0100.091.4
gnl|ECOLI|EG12217-MONOMER4251531CompleteK09125COG1738ProteobacteriaEnterobacter100.0100.091.86
gnl|ECOLI|EG12217-MONOMER4250725CompleteK09125COG1738ProteobacteriaEnterobacter100.0100.091.4
gnl|ECOLI|EG12217-MONOMER4250309CompleteK09125COG1738ProteobacteriaEnterobacter100.0100.091.4
gnl|ECOLI|EG12217-MONOMER4247595CompleteK09125COG1738ProteobacteriaEnterobacter100.0100.091.4
gnl|ECOLI|EG12217-MONOMER4249414CompleteK09125COG1738ProteobacteriaEnterobacter99.199.188.13
gnl|ECOLI|EG12217-MONOMER4233007CompleteK09125COG1738ProteobacteriaKlebsiella100.0100.087.33
gnl|ECOLI|EG12217-MONOMER4248984CompleteK09125COG1738ProteobacteriaKlebsiella100.0100.086.88
gnl|ECOLI|EG12217-MONOMER4238040CompleteK09125COG1738ProteobacteriaKlebsiella99.199.187.21
gnl|ECOLI|EG12217-MONOMER4253946CompleteK09125COG1738Proteobacteriaunknown95.4895.9376.89
gnl|ECOLI|EG12217-MONOMER4293437CompleteK09125COG1738unknownunknown98.6499.5473.39
gnl|ECOLI|EG12217-MONOMER4224272CompleteK09125COG1738Proteobacteriaunknown97.7497.372.22
gnl|ECOLI|EG12217-MONOMER4181270CompleteK09125COG1738ProteobacteriaProteus93.6792.4172.95
gnl|ECOLI|EG12217-MONOMER4226612CompleteK09125COG1738ProteobacteriaProvidencia95.9396.8571.16
gnl|ECOLI|EG12217-MONOMER3817287CompleteK09125COG1738ProteobacteriaAggregatibacter94.1290.9158.64
gnl|ECOLI|EG12217-MONOMER3956581CompleteK09125COG1738ProteobacteriaHaemophilus93.6793.1955.25
gnl|ECOLI|EG12217-MONOMER3952547CompleteK09125COG1738ProteobacteriaHaemophilus98.1996.653.71
gnl|ECOLI|EG12217-MONOMER3958721CompleteK09125COG1738ProteobacteriaHaemophilus98.1996.654.15
gnl|ECOLI|EG12217-MONOMER3954528CompleteK09125COG1738ProteobacteriaHaemophilus93.6793.1955.25
gnl|ECOLI|EG12217-MONOMER3947590CompleteK09125COG1738ProteobacteriaHaemophilus93.6793.1954.79
gnl|ECOLI|EG12217-MONOMER3943336CompleteK09125COG1738ProteobacteriaHaemophilus93.6793.1954.34
gnl|ECOLI|EG12217-MONOMER4444619Lack 5'-endK09125COG1738ProteobacteriaHaemophilus90.599.0654.72
gnl|ECOLI|EG12217-MONOMER4812368Lack 5'-endK09125COG1738unknownunknown85.9799.4958.67
gnl|ECOLI|EG12217-MONOMER4531062Lack 3'-endK09125COG1738ProteobacteriaHaemophilus85.9796.6555.45
gnl|ECOLI|EG12217-MONOMER4548172CompleteK09125COG1738unknownunknown87.3393.2454.92
gnl|ECOLI|EG12217-MONOMER5193114Lack 5'-endK09125COG1738ProteobacteriaHaemophilus76.9292.960.0
gnl|ECOLI|EG12217-MONOMER4332986CompleteK09125COG1738unknownunknown91.8693.5551.72
gnl|ECOLI|EG12217-MONOMER5190276Lack 3'-endK09125COG1738unknownunknown77.8396.7460.11
gnl|ECOLI|EG12217-MONOMER4364080CompleteK09125COG1738ProteobacteriaSuccinatimonas85.0787.0451.06
gnl|ECOLI|EG12217-MONOMER4351645CompleteK09125COG1738ProteobacteriaSuccinatimonas85.0787.0450.0
gnl|ECOLI|EG12217-MONOMER4460280CompleteK09125COG1738unknownunknown85.0789.153.19
gnl|ECOLI|EG12217-MONOMER4473683CompleteK09125COG1738unknownunknown85.0789.150.53
gnl|ECOLI|EG12217-MONOMER4217881CompleteK09125COG1738unknownunknown89.5988.7446.97
gnl|ECOLI|EG12217-MONOMER4747603CompleteK09125COG1738unknownunknown85.9794.9747.89
gnl|ECOLI|EG12217-MONOMER4133273CompleteK09125COG1738unknownunknown82.3581.4230.89
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The abundance of your query across gut microbiome samples:




The prevalence of your query across gut microbiome samples:




Taxonomic groups correlated with your query gene:

tax_level tax_name spearman_rho pvalue qvalue
phylumProteobacteria0.7490.00.0
classGammaproteobacteria0.9360.00.0
orderEnterobacteriales0.8690.00.0
familyEnterobacteriaceae0.8690.00.0
genusEscherichia0.7960.00.0
speciesEscherichia_coli0.7710.00.0
genusKlebsiella0.5894.74e-1753.2e-173
speciesKlebsiella_pneumoniae0.5631.42e-1568.38e-155
speciesEscherichia_unclassified0.5071.17e-1226.14e-121
genusPantoea0.4471.13e-924.85e-91
speciesPantoea_unclassified0.4471.13e-924.85e-91
genusEnterobacter0.4221.15e-814.52e-80
speciesEnterobacter_cloacae0.4163.7e-791.34e-77
familyFusobacteriaceae0.3722.47e-628.33e-61
phylumFusobacteria0.3691.64e-614.55e-60
classFusobacteriia0.3691.64e-614.55e-60
orderFusobacteriales0.3691.64e-614.55e-60
genusFusobacterium0.3685.9e-611.55e-59
speciesSubdoligranulum_unclassified-0.354.97e-551.23e-53
genusSubdoligranulum-0.3461.24e-532.93e-52
speciesHaemophilus_parainfluenzae0.3322.57e-495.78e-48
orderPasteurellales0.3313.78e-497.76e-48
familyPasteurellaceae0.3313.78e-497.76e-48
genusHaemophilus0.3316.23e-491.23e-47
speciesLachnospiraceae_bacterium_7_1_58FAA-0.3283.14e-485.93e-47
genusCitrobacter0.3283.53e-486.41e-47
genusVeillonella0.3275.98e-481.05e-46
speciesVeillonella_parvula0.3254.01e-476.76e-46
speciesCitrobacter_unclassified0.3191.81e-452.95e-44
speciesCitrobacter_freundii0.3144.36e-446.86e-43
speciesClostridium_nexile0.3112.84e-434.32e-42
speciesRuminococcus_gnavus0.3091.14e-421.68e-41
speciesEubacterium_siraeum-0.3082.69e-423.85e-41
speciesVeillonella_unclassified0.2994.94e-406.86e-39
speciesMegasphaera_micronuciformis0.2932.48e-383.34e-37
speciesClostridium_leptum-0.2917.32e-389.6e-37
speciesKlebsiella_oxytoca0.2883.84e-374.9e-36
genusMegasphaera0.2861.62e-362.01e-35
genusPseudoflavonifractor-0.2843.98e-364.7e-35
speciesPseudoflavonifractor_capillosus-0.2843.98e-364.7e-35
speciesVeillonella_dispar0.2799.36e-351.08e-33
speciesClostridium_perfringens0.2799.97e-351.11e-33
speciesAnaerotruncus_unclassified-0.2791.01e-341.11e-33
speciesEubacterium_ramulus-0.2677.71e-328.27e-31
familyRuminococcaceae-0.2635.34e-315.6e-30
genusActinobacillus0.2594.98e-305e-29
speciesActinobacillus_unclassified0.2594.98e-305e-29
familyOscillospiraceae-0.2596.04e-305.82e-29
genusOscillibacter-0.2596.04e-305.82e-29
speciesOscillibacter_unclassified-0.2587.8e-307.36e-29
speciesFusobacterium_nucleatum0.2571.12e-291.04e-28
genusBarnesiella-0.2561.81e-291.61e-28
speciesBarnesiella_intestinihominis-0.2561.81e-291.61e-28
genusCoprococcus-0.2554.82e-294.21e-28
speciesVeillonella_atypica0.2531.11e-289.53e-28
speciesLactobacillus_salivarius0.2497.83e-286.6e-27
speciesEubacterium_hallii-0.2471.74e-271.44e-26
classClostridia-0.2472.58e-272.05e-26
orderClostridiales-0.2472.58e-272.05e-26
speciesKlebsiella_unclassified0.2472.6e-272.05e-26
genusWeissella0.2431.5e-261.16e-25
familyRikenellaceae-0.2422.61e-261.96e-25
genusAlistipes-0.2422.61e-261.96e-25
speciesStreptococcus_anginosus0.246.45e-264.76e-25
genusCoprobacillus0.2364.17e-253.03e-24
speciesCoprococcus_comes-0.2364.93e-253.53e-24
phylumVerrucomicrobia-0.2356.47e-254.24e-24
classVerrucomicrobiae-0.2356.47e-254.24e-24
orderVerrucomicrobiales-0.2356.47e-254.24e-24
familyVerrucomicrobiaceae-0.2356.47e-254.24e-24
genusAkkermansia-0.2356.47e-254.24e-24
speciesAkkermansia_muciniphila-0.2356.47e-254.24e-24
speciesLachnospiraceae_bacterium_3_1_46FAA-0.2358e-255.17e-24
orderLactobacillales0.2341.2e-247.65e-24
classBacilli0.2322.83e-241.78e-23
genusButyrivibrio-0.2314.08e-242.53e-23
speciesWeissella_confusa0.2314.94e-243.03e-23
speciesFusobacterium_mortiferum0.235.98e-243.62e-23
speciesCoprobacillus_unclassified0.236.29e-243.76e-23
speciesFusobacterium_ulcerans0.236.51e-243.84e-23
speciesBifidobacterium_adolescentis-0.2291.06e-236.18e-23
speciesDorea_longicatena-0.2291.4e-238.06e-23
genusAggregatibacter0.2272.56e-231.46e-22
genusEubacterium-0.2264.72e-232.63e-22
familyEubacteriaceae-0.2264.74e-232.63e-22
familyBacteroidales_noname-0.2241.08e-225.79e-22
genusBacteroidales_noname-0.2241.08e-225.79e-22
speciesBacteroidales_bacterium_ph8-0.2241.08e-225.79e-22
speciesClostridium_ramosum0.2231.34e-227.11e-22
speciesBacteroides_uniformis-0.2231.73e-229.07e-22
genusDorea-0.2222.13e-221.1e-21
speciesLactobacillus_mucosae0.2191.18e-216.05e-21
genusAnaerotruncus-0.2181.68e-218.53e-21
speciesEubacterium_rectale-0.2131.55e-207.78e-20
genusEnterococcus0.2112.52e-201.25e-19
speciesAnaerostipes_hadrus-0.214.51e-202.22e-19
familyEnterococcaceae0.214.67e-202.27e-19
genusRuminococcaceae_noname-0.2062.2e-191.05e-18
speciesRuminococcaceae_bacterium_D16-0.2062.2e-191.05e-18
speciesPrevotella_buccae0.2053.49e-191.65e-18
speciesAlistipes_putredinis-0.2045.22e-192.44e-18
speciesCampylobacter_concisus0.2021.08e-185e-18
genusCoprobacter-0.2011.39e-186.31e-18
speciesCoprobacter_fastidiosus-0.2011.39e-186.31e-18
speciesCoprococcus_catus-0.22.58e-181.16e-17
speciesStreptococcus_mitis_oralis_pneumoniae0.22.93e-181.3e-17
speciesFusobacterium_varium0.1993.42e-181.51e-17
genusPrevotella0.1985.55e-182.43e-17
speciesRoseburia_hominis-0.1979.11e-183.94e-17
speciesStreptococcus_salivarius0.1961.12e-174.81e-17
speciesRuminococcus_sp_5_1_39BFAA-0.1961.36e-175.78e-17
speciesClostridium_bolteae0.1951.81e-177.63e-17
speciesButyrivibrio_unclassified-0.1942.82e-171.18e-16
genusOdoribacter-0.1924.93e-172.04e-16
speciesEnterobacter_aerogenes0.1925.92e-172.43e-16
speciesWeissella_cibaria0.1918.23e-173.35e-16
speciesBifidobacterium_dentium0.1918.37e-173.38e-16
speciesStreptococcus_infantarius0.1918.54e-173.42e-16
classEpsilonproteobacteria0.191.06e-164.17e-16
orderCampylobacterales0.191.06e-164.17e-16
genusCampylobacter0.191.14e-164.45e-16
speciesAggregatibacter_segnis0.191.17e-164.53e-16
familyCampylobacteraceae0.1891.78e-166.83e-16
genusAdlercreutzia-0.1891.82e-166.87e-16
speciesAdlercreutzia_equolifaciens-0.1891.82e-166.87e-16
speciesAlistipes_shahii-0.1882.25e-168.43e-16
speciesPrevotella_copri0.1873.05e-161.13e-15
speciesClostridium_hathewayi0.1873.99e-161.47e-15
speciesLactococcus_garvieae0.1856.18e-162.26e-15
speciesHaemophilus_sputorum0.1856.65e-162.41e-15
speciesMegamonas_unclassified0.1858.37e-163.02e-15
genusMegamonas0.1841.1e-153.93e-15
familyLeuconostocaceae0.1822.09e-157.42e-15
genusRuminococcus-0.1822.42e-158.52e-15
familyBacillales_noname0.1822.49e-158.64e-15
genusGemella0.1822.49e-158.64e-15
speciesOdoribacter_splanchnicus-0.1813.61e-151.24e-14
speciesEnterococcus_faecalis0.184.21e-151.44e-14
speciesDorea_formicigenerans-0.1795.78e-151.96e-14
familyStreptococcaceae0.1787.93e-152.65e-14
speciesStreptococcus_thermophilus-0.1787.93e-152.65e-14
speciesCollinsella_aerofaciens-0.1771.3e-144.32e-14
speciesAlistipes_senegalensis-0.1761.57e-145.18e-14
speciesClostridium_symbiosum0.1762.05e-146.72e-14
genusCollinsella-0.1752.22e-147.23e-14
speciesBlautia_hydrogenotrophica-0.1752.36e-147.63e-14
genusStreptococcus0.1734.69e-141.51e-13
genusLactobacillus0.1735.48e-141.75e-13
speciesBacteroides_fragilis0.1735.51e-141.75e-13
phylumFirmicutes-0.1725.89e-141.85e-13
speciesAlistipes_onderdonkii-0.1726.08e-141.9e-13
familyLactobacillaceae0.1727.11e-142.21e-13
speciesHaemophilus_paraphrohaemolyticus0.1727.98e-142.46e-13
speciesMitsuokella_unclassified-0.1711.14e-133.49e-13
familyClostridiaceae0.171.16e-133.53e-13
genusClostridium0.171.33e-134.02e-13
speciesC2likevirus_unclassified-0.1691.81e-135.44e-13
speciesPrevotella_stercorea0.1682.38e-137.11e-13
genusC2likevirus-0.1664.64e-131.38e-12
speciesBacteroides_plebeius0.1665.93e-131.75e-12
orderCoriobacteriales-0.1658.07e-132.35e-12
familyCoriobacteriaceae-0.1658.07e-132.35e-12
familyPorphyromonadaceae-0.1648.35e-132.42e-12
speciesStreptococcus_gordonii0.1641.01e-122.91e-12
speciesSutterella_wadsworthensis-0.1641.04e-122.98e-12
speciesRuminococcus_obeum-0.1641.05e-122.99e-12
genusMitsuokella-0.1621.62e-124.58e-12
speciesLachnospiraceae_bacterium_9_1_43BFAA0.163e-128.43e-12
speciesAlistipes_indistinctus-0.163.38e-129.44e-12
speciesMegasphaera_unclassified0.1578.68e-122.41e-11
familyVeillonellaceae0.1561.15e-113.17e-11
speciesStreptococcus_australis0.1561.16e-113.18e-11
genusPyramidobacter0.1532.76e-117.49e-11
speciesPyramidobacter_piscolens0.1532.76e-117.49e-11
phylumSynergistetes0.1533.04e-118.06e-11
classSynergistia0.1533.04e-118.06e-11
orderSynergistales0.1533.04e-118.06e-11
familySynergistaceae0.1533.04e-118.06e-11
orderBacillales0.1524.04e-111.07e-10
genusSutterella-0.1524.15e-111.09e-10
speciesRothia_mucilaginosa0.1524.25e-111.11e-10
speciesBacteroides_stercoris0.1515.07e-111.31e-10
genusAnaerostipes-0.1499.03e-112.33e-10
speciesStreptococcus_vestibularis0.1462.47e-106.34e-10
genusMorganella0.1443.73e-109.47e-10
speciesMorganella_morganii0.1443.73e-109.47e-10
speciesLactobacillus_fermentum0.1444.46e-101.13e-09
speciesEubacterium_ventriosum-0.1444.49e-101.13e-09
speciesErysipelotrichaceae_bacterium_21_3-0.1435.97e-101.49e-09
speciesKlebsiella_sp_MS_92_30.1426.66e-101.65e-09
speciesStreptococcus_lutetiensis0.141.25e-093.09e-09
speciesEnterococcus_faecium0.1391.42e-093.49e-09
genusPeptostreptococcus0.1391.44e-093.52e-09
speciesMethanobrevibacter_smithii-0.1381.94e-094.72e-09
phylumEuryarchaeota-0.1382.12e-095.13e-09
genusSolobacterium0.1373.04e-097.28e-09
speciesSolobacterium_moorei0.1373.04e-097.28e-09
genusMethanobrevibacter-0.1373.07e-097.32e-09
classMethanobacteria-0.1363.21e-097.54e-09
orderMethanobacteriales-0.1363.21e-097.54e-09
familyMethanobacteriaceae-0.1363.21e-097.54e-09
speciesClostridiales_bacterium_1_7_47FAA0.1363.38e-097.9e-09
familyPeptostreptococcaceae0.1345.29e-091.23e-08
speciesLachnospiraceae_bacterium_5_1_63FAA-0.1337.83e-091.81e-08
familyMicrococcaceae0.1338.02e-091.85e-08
genusRothia0.1338.78e-092.01e-08
speciesCoprococcus_sp_ART55_1-0.1321.01e-082.3e-08
genusProteus0.1311.4e-083.18e-08
familyMyoviridae0.131.81e-084.09e-08
speciesProteus_mirabilis0.131.82e-084.09e-08
speciesPeptostreptococcus_stomatis0.1292.44e-085.46e-08
speciesOscillibacter_sp_KLE_1745-0.1247.83e-081.74e-07
speciesBacteroides_coprocola0.1239.95e-082.2e-07
speciesAlistipes_finegoldii-0.1239.98e-082.2e-07
speciesStreptococcus_sanguinis0.1221.16e-072.55e-07
speciesBifidobacterium_pseudocatenulatum0.122.06e-074.5e-07
familySiphoviridae-0.1192.25e-074.89e-07
genusPeptostreptococcaceae_noname0.1192.45e-075.3e-07
speciesAlistipes_sp_AP11-0.1192.54e-075.47e-07
speciesMegamonas_rupellensis0.1173.55e-077.62e-07
speciesRuminococcus_lactaris-0.1173.58e-077.65e-07
speciesEggerthella_unclassified0.1174.25e-079.04e-07
speciesClostridium_citroniae0.1174.27e-079.04e-07
speciesLeuconostoc_lactis0.1174.36e-079.19e-07
speciesMegasphaera_elsdenii0.1164.78e-071e-06
speciesButyrivibrio_crossotus-0.1165.46e-071.14e-06
speciesMegamonas_hypermegale0.1155.65e-071.17e-06
speciesLachnospiraceae_bacterium_2_1_46FAA0.1155.84e-071.21e-06
speciesAnaerostipes_unclassified0.1156.75e-071.39e-06
genusGordonibacter-0.1147.78e-071.59e-06
speciesGordonibacter_pamelaeae-0.1147.78e-071.59e-06
speciesLachnospiraceae_bacterium_6_1_63FAA0.1138.95e-071.82e-06
speciesHoldemania_filiformis-0.1121.22e-062.47e-06
speciesRuminococcus_bromii-0.111.74e-063.51e-06
phylumActinobacteria-0.111.79e-063.58e-06
classActinobacteria-0.111.79e-063.58e-06
speciesAcidaminococcus_intestini0.1083e-065.97e-06
familyLachnospiraceae-0.1073.69e-067.32e-06
orderActinomycetales0.1064.74e-069.36e-06
speciesStreptococcus_pasteurianus0.1055.58e-061.1e-05
speciesStreptococcus_mutans0.1055.68e-061.11e-05
familyActinomycetaceae0.1055.79e-061.13e-05
speciesLactobacillus_crispatus0.1046.23e-061.21e-05
genusEggerthella0.1046.46e-061.25e-05
genusHoldemania-0.1037.91e-061.52e-05
genusFaecalibacterium-0.1038.73e-061.67e-05
speciesFaecalibacterium_prausnitzii-0.1038.73e-061.67e-05
genusClostridiales_noname0.1029.86e-061.88e-05
speciesParabacteroides_merdae-0.1021e-051.9e-05
genusActinomyces0.1011.11e-052.1e-05
speciesLachnospiraceae_bacterium_8_1_57FAA-0.1011.22e-052.29e-05
genusFlavonifractor0.1011.23e-052.29e-05
speciesFlavonifractor_plautii0.1011.23e-052.29e-05
speciesBacteroides_intestinalis0.11.39e-052.57e-05
speciesBacteroides_thetaiotaomicron0.11.39e-052.57e-05
speciesLactobacillus_vaginalis0.11.44e-052.64e-05
speciesMegamonas_funiformis0.11.44e-052.64e-05
speciesEnterobacteria_phage_HK5440.11.48e-052.71e-05
genusBifidobacterium-0.11.49e-052.72e-05
genusAcidaminococcaceae_unclassified-0.11.53e-052.78e-05
speciesGemella_morbillorum0.11.54e-052.78e-05
speciesLactobacillus_sanfranciscensis0.0991.71e-053.08e-05
speciesClostridium_bartlettii0.0982.03e-053.64e-05
speciesLachnospiraceae_bacterium_2_1_58FAA0.0972.46e-054.4e-05
orderBifidobacteriales-0.0972.56e-054.54e-05
familyBifidobacteriaceae-0.0972.56e-054.54e-05
speciesAlistipes_sp_HGB5-0.0972.7e-054.77e-05
classNegativicutes0.0972.82e-054.95e-05
orderSelenomonadales0.0972.82e-054.95e-05
familyPropionibacteriaceae-0.0963.05e-055.33e-05
speciesLactobacillus_gasseri0.0963.07e-055.35e-05
orderAeromonadales0.0963.3e-055.73e-05
speciesOdoribacter_unclassified-0.0944.32e-057.47e-05
speciesRoseburia_unclassified-0.0935.55e-059.56e-05
speciesLactobacillus_oris0.0935.77e-059.9e-05
speciesAcidaminococcus_fermentans0.0917.44e-050.000127
speciesDesulfovibrio_desulfuricans-0.0918.73e-050.000149
speciesLactobacillus_acidophilus-0.0918.85e-050.00015
speciesPropionibacterium_freudenreichii-0.0890.0001070.000181
speciesBifidobacterium_longum-0.0880.0001510.000255
speciesBifidobacterium_breve0.0870.0001520.000255
speciesBifidobacterium_catenulatum-0.0860.0002010.000335
speciesStreptococcus_parasanguinis0.0860.0002010.000335
speciesBifidobacterium_animalis-0.0850.0002270.000377
speciesMethanobrevibacter_unclassified-0.0850.0002470.000409
genusParabacteroides-0.0840.0002660.000439
familyClostridiales_Family_XI_Incertae_Sedis0.0840.0002720.000447
familyPrevotellaceae0.0840.0002920.000479
genusLambdalikevirus0.0830.0003110.000508
speciesBacteroides_finegoldii0.0820.0003760.000612
speciesOscillibacter_sp_KLE_1728-0.0820.0003840.000623
speciesLachnospiraceae_bacterium_3_1_57FAA_CT1-0.0820.0003990.000645
speciesBacteroides_salyersiae0.0810.000420.000677
speciesLactococcus_phage_P680-0.0810.0004530.000727
speciesRuminococcus_torques-0.0810.0004550.000728
speciesHoldemania_unclassified-0.0810.0004570.000729
speciesCoprococcus_eutactus-0.0790.0006280.000998
speciesLactobacillus_amylovorus0.0780.0006810.00108
orderBurkholderiales-0.0780.0006880.00109
speciesOlsenella_unclassified-0.0780.0007280.00115
speciesClostridium_clostridioforme0.0780.0007490.00117
speciesBacteroides_cellulosilyticus-0.0780.0007770.00121
familySutterellaceae-0.0780.0007870.00123
speciesParaprevotella_xylaniphila-0.0770.0008870.00138
speciesBacteroides_sp_3_1_190.0770.0009170.00142
speciesParaprevotella_unclassified-0.0760.0009460.00146
speciesRuminococcus_champanellensis-0.0760.001010.00155
genusParaprevotella-0.0760.001040.00159
speciesClostridium_sp_L2_50-0.0750.001140.00174
genusMyoviridae_noname0.0750.001250.0019
genusLachnospiraceae_noname-0.0740.001340.00203
speciesDialister_invisus-0.0730.001480.00224
speciesBacteroides_xylanisolvens0.0730.001510.00228
familyOxalobacteraceae-0.0730.001580.00238
speciesBacteroides_coprophilus0.0720.001720.00258
genusOxalobacter-0.0720.00180.00268
speciesOxalobacter_formigenes-0.0720.00180.00268
genusPropionibacterium-0.0720.001920.00285
speciesLactobacillus_plantarum0.0710.002150.00318
speciesRoseburia_intestinalis-0.070.002360.00348
speciesParaprevotella_clara-0.070.002440.00359
speciesAcidaminococcus_unclassified-0.070.00250.00366
classBetaproteobacteria-0.0690.002660.00388
speciesLactococcus_lactis-0.0690.002660.00388
genusSiphoviridae_noname-0.0670.003610.00524
genusDialister-0.0660.004020.00582
orderCaudovirales-0.0660.004040.00583
speciesBacteroides_dorei-0.0660.004080.00587
speciesBacteroides_oleiciplenus0.0640.005930.00851
genusParvimonas0.0630.006020.00858
speciesBacteroides_nordii0.0630.006020.00858
speciesParvimonas_unclassified0.0630.006080.00864
speciesEubacterium_cylindroides-0.060.009170.013
genusTunalikevirus0.060.009470.0134
speciesErysipelotrichaceae_bacterium_5_2_54FAA-0.0590.01030.0145
genusOlsenella-0.0580.01160.0163
speciesEubacterium_sp_3_1_31-0.0580.01190.0167
speciesPorphyromonas_uenonis0.0570.01290.018
familyAcidaminococcaceae-0.0570.01410.0196
genusDesulfovibrio-0.0560.01520.0211
speciesEubacterium_eligens-0.0550.01720.0238
speciesCoriobacteriaceae_bacterium_phI-0.0550.01740.024
speciesSutterella_parvirubra0.0550.01830.0252
speciesParabacteroides_goldsteinii0.0540.01990.0273
speciesCollinsella_tanakaei0.0540.02020.0276
speciesClostridium_sp_KLE_1755-0.0540.02040.0278
speciesCoprobacillus_sp_D60.0530.02170.0295
speciesLachnospiraceae_bacterium_5_1_57FAA0.0530.02210.03
speciesKlebsiella_phage_KP360.0530.02280.0308
genusCoriobacteriaceae_noname-0.0520.02340.0316
speciesClostridium_spiroforme-0.0510.0270.0363
speciesLactococcus_phage_936_sensu_lato-0.0510.02710.0363
genusLeuconostoc0.0510.02730.0365
speciesLactococcus_phage_jm2-0.0510.02870.0383
speciesBacteroides_sp_1_1_6-0.050.0320.0425
genusBlautia0.0490.03430.0455
phylumViruses_noname-0.0480.03720.049
classViruses_noname-0.0480.03720.049
speciesLactococcus_phage_phi7-0.0480.03980.0523
speciesBacteroides_sp_2_1_22-0.0470.04060.0532
speciesAlistipes_unclassified-0.0470.04110.0537
speciesClostridium_sp_ATCC_BAA_4420.0460.04480.0584
speciesBlautia_producta0.0460.04550.0592
speciesParabacteroides_sp_D13-0.0460.0470.0609
speciesBacteroides_salanitronis-0.0460.04840.0626
speciesParabacteroides_unclassified0.0450.05170.0667
genusRoseburia-0.0440.05480.0704
speciesLachnospiraceae_bacterium_1_4_56FAA0.0440.05490.0704
genusPhascolarctobacterium-0.0440.05810.0741
speciesPhascolarctobacterium_succinatutens-0.0440.05810.0741
speciesBacteroides_pectinophilus-0.0440.05960.0758
speciesErysipelotrichaceae_bacterium_6_1_45-0.0430.06050.0768
genusPeptoniphilus0.0430.06310.0798
speciesBifidobacterium_angulatum-0.0410.07620.0962
genusSuccinatimonas0.040.08180.103
speciesSuccinatimonas_hippei0.040.08180.103
speciesCoprobacillus_sp_29_10.040.08560.107
speciesDesulfovibrio_piger-0.040.08580.107
familyClostridiales_noname0.040.08730.109
speciesBacteroides_eggerthii0.040.08760.109
speciesLactobacillus_casei_paracasei-0.0390.09420.117
classErysipelotrichia0.0380.0990.122
orderErysipelotrichales0.0380.0990.122
familyErysipelotrichaceae0.0380.0990.122
speciesEubacterium_limosum0.0370.1070.131
speciesEubacterium_biforme-0.0370.1140.139
genusAcidaminococcus0.0360.1220.149
speciesLactobacillus_reuteri0.0350.1250.152
speciesTuricibacter_sanguinis0.0350.1290.156
speciesLactobacillus_delbrueckii-0.0350.1290.156
familyBacteroidaceae0.0350.1310.158
genusBacteroides0.0350.1310.158
familySuccinivibrionaceae0.0340.140.168
speciesBacteroides_faecis0.0340.1430.171
speciesBacteroides_massiliensis0.0320.1630.195
speciesHoldemania_sp_AP20.0320.1710.204
genusCatenibacterium-0.0310.180.213
speciesCatenibacterium_mitsuokai-0.0310.180.213
speciesParabacteroides_sp_20_3-0.030.1950.231
genusPorphyromonas0.030.1980.234
speciesSubdoligranulum_sp_4_3_54A2FAA-0.0280.2320.272
speciesBifidobacterium_bifidum-0.0280.2320.272
genusClostridiaceae_noname-0.0270.250.292
speciesClostridiaceae_bacterium_JC118-0.0270.250.292
speciesMitsuokella_multacida0.0250.2730.318
genusStaphylococcus-0.0250.2810.327
speciesEggerthella_sp_1_3_56FAA-0.0240.2930.34
speciesCollinsella_unclassified-0.0210.3610.418
speciesBacteroides_vulgatus-0.0210.3670.424
speciesStreptococcus_phage_Sfi210.020.3830.441
genusLactococcus-0.0190.420.482
speciesLactococcus_phage_bIL67-0.0180.430.493
familyPodoviridae0.0180.4490.513
speciesRuminococcus_callidus-0.0170.4530.516
speciesAnaerotruncus_colihominis-0.0170.4710.536
genusSlackia0.0170.4730.537
familyViruses_noname0.0160.4790.541
genusViruses_noname0.0160.4790.541
genusButyricimonas-0.0160.4880.548
speciesButyricimonas_synergistica-0.0160.4880.548
speciesPorphyromonas_asaccharolytica0.0160.4910.55
speciesCollinsella_intestinalis0.0160.4960.555
genusErysipelotrichaceae_noname0.0150.5110.57
classDeltaproteobacteria-0.0150.5210.577
orderDesulfovibrionales-0.0150.5210.577
familyDesulfovibrionaceae-0.0150.5210.577
familyStaphylococcaceae-0.0140.5410.598
speciesOdoribacter_laneus-0.0140.5450.601
speciesSlackia_piriformis-0.0140.5590.615
speciesLactobacillus_rhamnosus0.0130.5860.643
speciesDialister_succinatiphilus0.0120.6060.664
speciesDorea_unclassified-0.0120.6080.664
speciesParabacteroides_johnsonii0.0110.6260.682
orderViruses_noname-0.0110.6280.683
speciesEubacterium_dolichum0.0110.6310.685
speciesRuminococcus_sp_JC3040.0110.6380.69
speciesBilophila_wadsworthia-0.0110.6390.69
speciesBacteroides_barnesiae-0.0110.6430.693
genusBilophila-0.010.6630.713
speciesErysipelotrichaceae_bacterium_2_2_44A-0.0090.6880.738
speciesLactobacillus_ruminis0.0090.690.738
speciesEggerthella_lenta0.0090.6910.738
phylumBacteroidetes-0.0090.6950.738
classBacteroidia-0.0090.6960.738
orderBacteroidales-0.0090.6960.738
speciesBilophila_unclassified-0.0090.7060.747
speciesPeptostreptococcaceae_noname_unclassified0.0080.730.771
genusTuricibacter0.0080.7350.774
genusParasutterella-0.0080.7410.777
speciesParasutterella_excrementihominis-0.0080.7410.777
speciesLachnospiraceae_bacterium_1_1_57FAA0.0070.7480.783
familyBurkholderiales_noname-0.0070.7670.801
speciesBacteroides_sp_4_3_47FAA0.0070.7780.811
speciesPrevotella_bivia0.0060.7810.812
speciesClostridium_asparagiforme0.0050.8130.843
speciesBacteroides_clarus-0.0050.8280.856
genusButyricicoccus0.0050.8310.856
speciesButyricicoccus_pullicaecorum0.0050.8310.856
genusMethanosphaera-0.0050.8350.857
speciesMethanosphaera_stadtmanae-0.0050.8350.857
genusBurkholderiales_noname-0.0040.850.868
speciesBurkholderiales_bacterium_1_1_47-0.0040.850.868
speciesBacteroides_fluxus-0.0030.8930.909
genusSutterellaceae_unclassified0.0030.8940.909
speciesBacteroides_caccae-0.0030.9010.915
speciesParabacteroides_distasonis0.0030.9140.925
speciesTuricibacter_unclassified0.0020.9150.925
speciesBacteroides_ovatus-0.0020.9230.931
speciesPeptostreptococcus_anaerobius0.0020.9270.933
speciesErysipelotrichaceae_bacterium_3_1_53-0.0010.9680.972
speciesRoseburia_inulinivorans-0.0010.9810.983
orderPseudomonadales0.00.9920.992
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Association of query gene abundance with clinical phenotypes:

Boxplots:


Statistics:

pheno country case_n ctrl_n case_mean ctrl_mean pvalue rank percentile
Liver cirrhosisChina1201140.05313012689330.01005872918948.44393529324e-1111153.74551
Type II diabetesDenmark752770.01292475734580.005110694137823.40677806585e-098242.70102
Colorectal cancerAustria64350.05967735933120.01501221070040.034983973080921517.27771
Crohns diseaseSpain17660.03632612624760.006314536084310.03499157717541059335.2219
Ulcerative colitisSpain78660.004066257621160.006314536084310.0778136518834614020.2547
Type II diabetesChina1831850.03470910159810.02811772963030.3145517013691670355.2001
Type II diabetesSweden53920.009308861330540.007152826605320.4697166612711543952.2824
Rheumatoid arthritisChina127980.02355570716130.01982871336810.6487931871952114470.5106
ObesityDenmark1691230.00690874763790.01051891825480.6881715854032364277.7416
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Citation:

Nayfach S, Fischbach MA, Pollard KS. MetaQuery: a web server for rapid annotation and quantitative analysis of specific genes in the human gut microbiome. Bioinformatics 2015;31(14). doi:10.1093/bioinformatics/btv382