MetaQuery: quantitative analysis of the human gut microbiome

Results

Estimated gene abundances and results from statistical analyses

Job details:

Submission date: 2021-01-24 09:45:28 PST
Job id & description: 2371, ada2
Query type: protein
Count queries & homologs: 100, 100
Min % identity & max e-value: 100%, 1e-5
Min % query & target coverage: 95%, 95%

Click here to download results

Table of contents:


Gut microbiome genes homologous to your query gene:

query_id target_id status kegg eggnog phylum genus query_cov target_cov percent_identity
MH0090_GL01132762315144CompleteK01488COG1816unknownunknown100.0100.0100.0
V1.CD7-0-PN_GL00099452296460CompleteK01488COG1816unknownunknown100.0100.0100.0
158256496-stool1_revised2351086Lack 5'-endK01485COG0402ProteobacteriaHaemophilus100.0100.0100.0
MH0001_GL00153192300969CompleteK01488COG1816unknownunknown100.0100.0100.0
T2D-177A_GL00394422338026CompleteK01488COG1816unknownunknown100.0100.0100.0
158499257-stool1_revised2338625CompleteK00571NOG10100unknownunknown100.0100.0100.0
O2.UC7-0_GL00149332321725CompleteK01488COG1816Firmicutesunknown100.0100.0100.0
435842.HMPREF0848_008362326745CompleteK01488COG1816FirmicutesStreptococcus100.0100.0100.0
MH0113_GL00575852315523CompleteK01488COG1816unknownunknown100.0100.0100.0
MH0131_GL00856452354116CompleteK01488COG1816unknownunknown100.0100.0100.0
O2.UC18-0_GL00367142333884Lack 5'-endK01488COG1816FirmicutesBlautia100.0100.0100.0
O2.UC27-0_GL00188962334093CompleteK01488COG1816unknownunknown100.0100.0100.0
V1.CD38-0_GL00660192322163CompleteK01488COG1816FirmicutesStreptococcus100.0100.0100.0
MH0372_GL01236982357346CompleteK01488COG1816unknownunknown100.0100.0100.0
O2.UC2-1_GL00980722307889CompleteK01488COG1816unknownunknown100.0100.0100.0
V1.FI17_GL01729292296827CompleteK01488COG1816FirmicutesPeptostreptococcus100.0100.0100.0
MH0003_GL00383912339823CompleteK01488COG1816unknownunknown100.0100.0100.0
MH0401_GL00173002319705Lack 5'-endK01488COG1816Firmicutesunknown100.0100.0100.0
158256496-stool1_revised2401507CompleteK01485COG0402ProteobacteriaHaemophilus98.8100.0100.0
158256496-stool1_revised2396747CompleteK01485COG0402ProteobacteriaHaemophilus98.8100.0100.0
160178356-stool1_revised2351488CompleteK01488COG1816Firmicutesunknown100.0100.0100.0
888057.HMPREF9064_17702416771CompleteK01485COG0402ProteobacteriaAggregatibacter100.0100.0100.0
888057.HMPREF9064_17702414484CompleteK01485COG0402ProteobacteriaAggregatibacter100.0100.0100.0
889206.HMPREF9425_11852327008CompleteK01488COG1816FirmicutesStreptococcus100.0100.0100.0
MH0435_GL01108892333193CompleteK01488COG1816unknownunknown100.0100.0100.0
MH0333_GL01051002318568CompleteK01488COG1816unknownunknown100.0100.0100.0
NLM027_GL00818822298223CompleteK01488COG1816ProteobacteriaEnterobacter100.0100.0100.0
T2D-31A_GL01055742338125CompleteK01488COG1816FirmicutesLactobacillus100.0100.0100.0
V1.CD11-0_GL00008592360075CompleteK01488COG1816FirmicutesLactobacillus100.0100.0100.0
MH0012_GL01853172340144CompleteK01488COG1816unknownunknown100.0100.0100.0
MH0142_GL00727092341704CompleteK01488COG1816unknownunknown100.0100.0100.0
V1.CD20-0_GL00235962334938Lack 5'-endK01488COG1816unknownunknown100.0100.0100.0
748671.LCRIS_015082352131CompleteK01488COG1816FirmicutesLactobacillus100.0100.0100.0
MH0402_GL00185192306441CompleteK01488COG1816unknownunknown100.0100.0100.0
324831.LGAS_14062364795CompleteK01488COG1816FirmicutesLactobacillus100.0100.0100.0
MH0101_GL00652912302286CompleteK01488COG1816unknownunknown100.0100.0100.0
T2D-121A_GL00418542363201CompleteK01488COG1816FirmicutesLactobacillus100.0100.0100.0
457421.CBFG_038462377718CompleteK01488COG1816Firmicutesunknown100.0100.0100.0
763496533-stool2_revised2389975CompleteK01488COG1816unknownunknown100.0100.0100.0
T2D-108A_GL01897932363119CompleteK01488COG1816ProteobacteriaEnterobacter100.0100.0100.0
O2.UC15-1_GL00148932320891CompleteK01488COG1816unknownunknown100.0100.0100.0
O2.UC34-0_GL00364622359452CompleteK01488COG1816FirmicutesLactobacillus100.0100.0100.0
T2D-53A_GL00364012415101Lack 5'-endK01488COG1816unknownunknown100.0100.0100.0
V1.CD3-0-PT_GL00330492360339CompleteK01488COG1816ProteobacteriaProteus100.0100.0100.0
V1.UC52-1_GL01408532374529CompleteK01488COG1816Firmicutesunknown100.0100.0100.0
716541.ECL_023002364848CompleteK01488COG1816ProteobacteriaEnterobacter100.0100.0100.0
V1.UC39-4_GL00285662361715CompleteK01488COG1816ProteobacteriaProvidencia100.0100.0100.0
1045856.EcWSU1_019332364752CompleteK01488COG1816ProteobacteriaEnterobacter100.0100.0100.0
V1.CD17-4_GL00373872398705CompleteK01488COG1816unknownunknown100.0100.0100.0
V1.UC26-0_GL01659952425608CompleteK01488COG1816FirmicutesButyrivibrio100.0100.0100.0
469595.CSAG_012252364937CompleteK01488COG1816ProteobacteriaCitrobacter100.0100.0100.0
767455.LDBND_13972403549CompleteK01488COG1816FirmicutesLactobacillus100.0100.0100.0
888063.HMPREF9086_04752365122CompleteK01488COG1816ProteobacteriaEnterobacter100.0100.0100.0
O2.UC27-1_GL00896252372023CompleteK01488COG1816Firmicutesunknown100.0100.0100.0
SZEY-40A_GL00097272362990CompleteK01488COG1816ProteobacteriaEnterobacter100.0100.0100.0
457421.CBFG_060912377716CompleteK01488COG1816Firmicutesunknown100.0100.0100.0
NLM032_GL00452762426552CompleteK01488COG1816FirmicutesBlautia100.0100.0100.0
O2.UC40-1_GL01041422436272Lack 5'-endK01488COG1816FirmicutesDorea100.0100.0100.0
V1.CD7-0-PN_GL00019762399277CompleteK01488COG1816FirmicutesLactobacillus100.0100.0100.0
V1.FI37_GL00399592425364Lack 5'-endK01488COG1816FirmicutesButyrivibrio100.0100.0100.0
V1.UC21-4_GL01173682374163CompleteK01488COG1816ProteobacteriaEnterobacter100.0100.0100.0
V1.UC35-4_GL00250102374306CompleteK01488COG1816unknownunknown100.0100.0100.0
1006551.KOX_219452364743CompleteK01488COG1816ProteobacteriaKlebsiella100.0100.0100.0
ED13A_GL00103122362727CompleteK01488COG1816ProteobacteriaKlebsiella100.0100.0100.0
MH0206_GL00813762406685Lack 5'-endK01488COG1816FirmicutesEubacterium100.0100.0100.0
MH0260_GL01459972355916CompleteK01488COG1816ProteobacteriaKlebsiella100.0100.0100.0
O2.UC1-2_GL01595932423144CompleteK01488COG1816FirmicutesBlautia100.0100.0100.0
MH0204_GL01020252355243CompleteK01488COG1816ProteobacteriaKlebsiella100.0100.0100.0
MH0372_GL00685652395836CompleteK01488COG1816unknownunknown100.0100.0100.0
V1.FI05_GL00669782476198CompleteK01488COG1816unknownunknown100.0100.0100.0
O2.UC38-0_GL00802342359532CompleteK01488COG1816ProteobacteriaKlebsiella100.0100.0100.0
T2D-77A_GL00698852440397CompleteK01488COG1816unknownunknown100.0100.0100.0
469613.HMPREF0864_012652377744CompleteK01488COG1816Proteobacteriaunknown100.0100.0100.0
MH0117_GL00969032315574CompleteK03652COG2094unknownunknown100.0100.0100.0
O2.UC20-1_GL01809852448644CompleteK01488COG1816unknownunknown100.0100.0100.0
MH0047_GL00082122455386CompleteK01488COG1816unknownunknown100.0100.0100.0
MH0145_GL01240802469587CompleteK00571NOG10100unknownunknown100.0100.0100.0
MH0420_GL00203712447661CompleteK01488COG1816unknownunknown100.0100.0100.0
V1.UC58-4_GL01485792310642Lack 5'-endK01488COG1816unknownunknown100.0100.0100.0
521095.Apar_04402377630CompleteK01488COG1816ActinobacteriaAtopobium100.0100.0100.0
MH0154_GL00598532456787CompleteK01488COG1816Firmicutesunknown100.0100.0100.0
MH0420_GL00551902460453CompleteK01488COG1816unknownunknown100.0100.0100.0
MH0277_GL00449082394641CompleteK01488COG1816FirmicutesClostridium100.0100.0100.0
MH0211_GL00401522444692Lack 5'-endK01488COG1816Firmicutesunknown100.0100.0100.0
V1.CD12-3_GL00899852462318CompleteK01488COG1816FirmicutesBlautia100.0100.0100.0
V1.CD3-0-PT_GL00256982449798CompleteK01488COG1816unknownunknown100.0100.0100.0
MH0012_GL00038402404087CompleteK01488COG1816unknownunknown100.0100.0100.0
MH0382_GL00311752332251CompleteK01488COG1816unknownunknown100.0100.0100.0
V1.FI33_GL00759302425304CompleteK01488COG1816unknownunknown100.0100.0100.0
MH0006_GL02246912454938CompleteK01488COG1816unknownunknown100.0100.0100.0
V1.CD6-0-PT_GL00926702476054Lack both endsK01488COG1816unknownunknown100.0100.0100.0
MH0071_GL00286402442741CompleteK00571NOG10100unknownunknown100.0100.0100.0
MH0355_GL01820532408475CompleteK03652COG2094unknownunknown100.0100.0100.0
V1.CD46-0_GL00213702462763CompleteK01488COG1816FirmicutesBlautia100.0100.0100.0
195102.CPE25062377560CompleteK01488COG1816FirmicutesClostridium100.0100.0100.0
MH0372_GL01178052446815CompleteK01488COG1816unknownunknown100.0100.0100.0
457396.CSBG_016052416548CompleteK01488COG1816FirmicutesClostridium100.0100.0100.0
N083A_GL00062832478361CompleteK01488COG1816Firmicutesunknown100.0100.0100.0
MH0236_GL00943762419865CompleteK11991COG0590ProteobacteriaSutterella100.0100.0100.0
V1.CD44-4_GL00506802424612CompleteK11991COG0590ProteobacteriaSutterella100.0100.0100.0
Click on arrows to sort table data. Shift+click to sort by multiple columns.

The abundance of your query across gut microbiome samples:




The prevalence of your query across gut microbiome samples:




Taxonomic groups correlated with your query gene:

tax_level tax_name spearman_rho pvalue qvalue
phylumBacteroidetes-0.4487.19e-931.15e-90
classBacteroidia-0.4487.28e-931.15e-90
orderBacteroidales-0.4487.28e-931.15e-90
genusBlautia0.4212.84e-813.35e-79
classBacilli0.4051.32e-741.25e-72
orderLactobacillales0.4043.39e-742.67e-72
familyStreptococcaceae0.3971.9e-711.28e-69
genusStreptococcus0.3911.67e-699.34e-68
phylumFirmicutes0.3911.78e-699.34e-68
familyLachnospiraceae0.3912.91e-691.37e-67
speciesStreptococcus_salivarius0.3671.29e-605.54e-59
classClostridia0.3392.15e-517.81e-50
orderClostridiales0.3392.15e-517.81e-50
phylumActinobacteria0.3182.64e-458.31e-44
classActinobacteria0.3182.64e-458.31e-44
speciesLachnospiraceae_bacterium_5_1_63FAA0.3145.08e-441.5e-42
familyBacillales_noname0.3091.35e-423.54e-41
genusGemella0.3091.35e-423.54e-41
genusAnaerostipes0.33.38e-408.4e-39
familyPorphyromonadaceae-0.2964.25e-391e-37
speciesStreptococcus_parasanguinis0.2941.3e-382.92e-37
familyPeptostreptococcaceae0.2932.2e-384.72e-37
speciesRuminococcus_obeum0.2932.65e-385.44e-37
orderBacillales0.2878.64e-371.7e-35
genusPeptostreptococcaceae_noname0.2879.52e-371.8e-35
speciesRuminococcus_sp_5_1_39BFAA0.2845.53e-361e-34
orderBifidobacteriales0.2821.71e-352.88e-34
familyBifidobacteriaceae0.2821.71e-352.88e-34
speciesStreptococcus_sanguinis0.2812.39e-353.89e-34
genusBifidobacterium0.2798.87e-351.4e-33
genusLachnospiraceae_noname0.2772.28e-343.38e-33
speciesRuminococcus_torques0.2772.29e-343.38e-33
speciesEubacterium_hallii0.2757.97e-341.14e-32
genusParabacteroides-0.2741.24e-331.72e-32
genusDorea0.2733.19e-334.3e-32
orderActinomycetales0.2652.12e-312.78e-30
speciesAnaerostipes_hadrus0.2635.06e-316.45e-30
familyRikenellaceae-0.2621.27e-301.54e-29
genusAlistipes-0.2621.27e-301.54e-29
speciesDorea_formicigenerans0.262.9e-303.42e-29
genusOdoribacter-0.2588.48e-309.76e-29
familyActinomycetaceae0.2562.05e-292.3e-28
speciesOdoribacter_splanchnicus-0.2545.62e-296.17e-28
speciesStreptococcus_mitis_oralis_pneumoniae0.2531.02e-281.09e-27
genusActinomyces0.2531.3e-281.36e-27
speciesBifidobacterium_longum0.2521.57e-281.61e-27
speciesRuminococcus_gnavus0.253.79e-283.81e-27
genusRuminococcus0.255.26e-285.17e-27
speciesStreptococcus_australis0.2498.85e-288.52e-27
orderCoriobacteriales0.2481.63e-271.51e-26
familyCoriobacteriaceae0.2481.63e-271.51e-26
genusSolobacterium0.2413.53e-263.14e-25
speciesSolobacterium_moorei0.2413.53e-263.14e-25
speciesAlistipes_shahii-0.2355.91e-255.17e-24
speciesClostridium_bartlettii0.2341.35e-241.16e-23
speciesStreptococcus_gordonii0.237.46e-246.29e-23
familyRuminococcaceae0.2272.89e-232.39e-22
speciesStreptococcus_vestibularis0.227.43e-226.05e-21
genusEggerthella0.2199.95e-227.96e-21
familyLactobacillaceae0.2181.42e-211.12e-20
speciesStreptococcus_anginosus0.2155.54e-214.29e-20
speciesEggerthella_unclassified0.2131.2e-209.14e-20
genusRothia0.2122.1e-201.57e-19
familyMicrococcaceae0.2112.72e-202.01e-19
genusLactobacillus0.2113.39e-202.46e-19
speciesRothia_mucilaginosa0.2061.89e-191.35e-18
speciesCoprobacillus_unclassified0.2062.44e-191.72e-18
speciesAlistipes_putredinis-0.2011.77e-181.23e-17
familyPrevotellaceae-0.1985.1e-183.49e-17
speciesStreptococcus_mutans0.1979.09e-186.13e-17
genusClostridium0.1979.8e-186.51e-17
speciesClostridium_ramosum0.1961.3e-178.52e-17
familyClostridiaceae0.1942.32e-171.5e-16
classGammaproteobacteria0.1942.65e-171.69e-16
genusCoprobacillus0.1917.44e-174.68e-16
genusVeillonella0.1892.01e-161.25e-15
speciesParabacteroides_merdae-0.1882.94e-161.8e-15
speciesVeillonella_parvula0.1873.53e-162.14e-15
speciesClostridium_nexile0.1864.68e-162.8e-15
familyBacteroidaceae-0.1864.93e-162.87e-15
genusBacteroides-0.1864.93e-162.87e-15
speciesStreptococcus_thermophilus0.184.55e-152.62e-14
speciesBifidobacterium_dentium0.1797.36e-154.19e-14
speciesDorea_longicatena0.1761.84e-141.03e-13
genusFaecalibacterium0.1761.97e-141.08e-13
speciesFaecalibacterium_prausnitzii0.1761.97e-141.08e-13
genusRoseburia0.1752.78e-141.51e-13
speciesAlistipes_indistinctus-0.1743.5e-141.88e-13
speciesKlebsiella_oxytoca0.1735.23e-142.77e-13
speciesLachnospiraceae_bacterium_1_4_56FAA0.1727.52e-143.92e-13
genusButyricimonas-0.1727.64e-143.92e-13
speciesButyricimonas_synergistica-0.1727.64e-143.92e-13
familyEnterococcaceae0.1719.71e-144.93e-13
orderEnterobacteriales0.171.16e-135.76e-13
familyEnterobacteriaceae0.171.16e-135.76e-13
genusEnterococcus0.171.35e-136.64e-13
speciesAlistipes_senegalensis-0.171.39e-136.76e-13
genusPrevotella-0.1692.13e-131.03e-12
genusPeptostreptococcus0.1682.92e-131.39e-12
familyLeuconostocaceae0.1665.49e-132.59e-12
speciesPrevotella_copri-0.1649.37e-134.38e-12
speciesParabacteroides_goldsteinii-0.1649.58e-134.43e-12
speciesVeillonella_unclassified0.1641.11e-125.09e-12
speciesEggerthella_lenta0.163.62e-121.64e-11
speciesBlautia_producta0.1594.94e-122.22e-11
genusDesulfovibrio-0.1532.69e-111.2e-10
classErysipelotrichia0.1515.68e-112.46e-10
orderErysipelotrichales0.1515.68e-112.46e-10
familyErysipelotrichaceae0.1515.68e-112.46e-10
speciesCoprococcus_catus0.158.19e-113.51e-10
speciesAlistipes_finegoldii-0.1499.67e-114.11e-10
speciesLachnospiraceae_bacterium_9_1_43BFAA0.1499.95e-114.19e-10
speciesEubacterium_ramulus0.1481.31e-105.47e-10
speciesClostridium_perfringens0.1471.82e-107.54e-10
genusAdlercreutzia0.1462.14e-108.71e-10
speciesAdlercreutzia_equolifaciens0.1462.14e-108.71e-10
speciesEnterococcus_faecalis0.1462.19e-108.83e-10
speciesCitrobacter_unclassified0.1452.98e-101.19e-09
speciesCoprococcus_comes0.1453.14e-101.25e-09
speciesVeillonella_atypica0.1453.25e-101.28e-09
speciesFusobacterium_nucleatum0.1434.64e-101.81e-09
speciesVeillonella_dispar0.1434.83e-101.87e-09
speciesBacteroides_ovatus-0.1426.25e-102.4e-09
speciesErysipelotrichaceae_bacterium_6_1_450.1426.92e-102.63e-09
speciesLactobacillus_gasseri0.1419.35e-103.53e-09
genusKlebsiella0.1411.02e-093.82e-09
genusCitrobacter0.141.22e-094.53e-09
genusCoprococcus0.1381.82e-096.71e-09
speciesLachnospiraceae_bacterium_6_1_63FAA0.1363.17e-091.16e-08
speciesRoseburia_intestinalis0.1363.66e-091.32e-08
phylumProteobacteria0.1363.67e-091.32e-08
speciesLachnospiraceae_bacterium_2_1_58FAA0.1363.9e-091.39e-08
familyVeillonellaceae0.1354.17e-091.48e-08
speciesLactobacillus_delbrueckii0.1337.04e-092.48e-08
speciesWeissella_cibaria0.1328.99e-093.14e-08
speciesCampylobacter_concisus0.1329.21e-093.2e-08
genusEscherichia0.1321.05e-083.62e-08
speciesBacteroides_uniformis-0.1311.19e-084.07e-08
speciesKlebsiella_sp_MS_92_30.131.54e-085.23e-08
familyOscillospiraceae-0.131.76e-085.89e-08
genusOscillibacter-0.131.76e-085.89e-08
speciesClostridium_bolteae0.1291.98e-086.57e-08
speciesCitrobacter_freundii0.1291.99e-086.57e-08
genusAggregatibacter0.1292.19e-087.18e-08
speciesMegasphaera_micronuciformis0.1292.35e-087.65e-08
speciesParaprevotella_xylaniphila-0.1282.99e-089.67e-08
genusParaprevotella-0.1273.44e-081.1e-07
speciesParaprevotella_unclassified-0.1273.69e-081.18e-07
speciesGemella_morbillorum0.1264.43e-081.4e-07
speciesErysipelotrichaceae_bacterium_2_2_44A0.1264.46e-081.4e-07
genusLeuconostoc0.1264.88e-081.53e-07
speciesOscillibacter_unclassified-0.1255.66e-081.76e-07
speciesEscherichia_coli0.1256.24e-081.93e-07
genusFusobacterium0.1246.79e-082.08e-07
familyFusobacteriaceae0.1246.84e-082.08e-07
speciesPeptostreptococcus_stomatis0.1248.19e-082.48e-07
speciesLactobacillus_fermentum0.1239.3e-082.8e-07
speciesBacteroides_caccae-0.1239.65e-082.88e-07
genusActinobacillus0.1231.04e-073.07e-07
speciesActinobacillus_unclassified0.1231.04e-073.07e-07
speciesAlistipes_onderdonkii-0.1221.25e-073.66e-07
phylumFusobacteria0.1211.39e-074e-07
classFusobacteriia0.1211.39e-074e-07
orderFusobacteriales0.1211.39e-074e-07
speciesBacteroides_xylanisolvens-0.121.98e-075.66e-07
speciesParaprevotella_clara-0.121.99e-075.66e-07
speciesKlebsiella_pneumoniae0.122.01e-075.68e-07
speciesRuminococcus_bromii0.122.02e-075.68e-07
classDeltaproteobacteria-0.1192.23e-076.16e-07
orderDesulfovibrionales-0.1192.23e-076.16e-07
familyDesulfovibrionaceae-0.1192.23e-076.16e-07
genusWeissella0.1192.27e-076.23e-07
speciesPeptostreptococcaceae_noname_unclassified0.1192.69e-077.34e-07
genusOxalobacter-0.1192.74e-077.39e-07
speciesOxalobacter_formigenes-0.1192.74e-077.39e-07
speciesAggregatibacter_segnis0.1183.14e-078.42e-07
genusLactococcus0.1183.36e-078.96e-07
genusEubacterium0.1174.14e-071.1e-06
familyEubacteriaceae0.1174.21e-071.11e-06
speciesLactobacillus_salivarius0.1174.33e-071.14e-06
familyOxalobacteraceae-0.1164.7e-071.23e-06
speciesDesulfovibrio_desulfuricans-0.1165.28e-071.37e-06
speciesLactobacillus_casei_paracasei0.1165.3e-071.37e-06
speciesLactobacillus_mucosae0.1147.03e-071.8e-06
speciesBacteroides_vulgatus-0.1147.65e-071.95e-06
speciesBacteroides_stercoris-0.1148.48e-072.15e-06
speciesBacteroides_thetaiotaomicron-0.1139.27e-072.34e-06
speciesBacteroides_faecis-0.1139.52e-072.39e-06
speciesBifidobacterium_pseudocatenulatum0.1131.01e-062.52e-06
speciesDesulfovibrio_piger-0.1121.29e-063.2e-06
orderBurkholderiales-0.1111.62e-063.98e-06
speciesLachnospiraceae_bacterium_7_1_58FAA-0.1111.62e-063.98e-06
genusGordonibacter0.111.92e-064.67e-06
speciesGordonibacter_pamelaeae0.111.92e-064.67e-06
speciesDialister_invisus0.1082.71e-066.56e-06
genusCollinsella0.1073.37e-068.12e-06
genusDialister0.1073.83e-069.18e-06
speciesEnterobacter_cloacae0.1064.54e-061.08e-05
speciesLactococcus_garvieae0.1054.89e-061.16e-05
classBetaproteobacteria-0.1055.29e-061.25e-05
speciesRoseburia_inulinivorans0.1055.63e-061.32e-05
speciesEnterococcus_faecium0.1055.79e-061.35e-05
speciesCollinsella_aerofaciens0.1055.82e-061.35e-05
genusErysipelotrichaceae_noname0.1046.21e-061.44e-05
familySutterellaceae-0.1046.96e-061.6e-05
speciesErysipelotrichaceae_bacterium_21_30.1037.93e-061.82e-05
genusEnterobacter0.1021.06e-052.42e-05
speciesTuricibacter_sanguinis0.11.37e-053.11e-05
familyMyoviridae0.11.4e-053.16e-05
speciesBifidobacterium_catenulatum0.11.55e-053.48e-05
speciesBifidobacterium_adolescentis0.0991.63e-053.65e-05
speciesLachnospiraceae_bacterium_1_1_57FAA0.0972.79e-056.21e-05
speciesLachnospiraceae_bacterium_5_1_57FAA0.0972.91e-056.45e-05
speciesLactococcus_lactis0.0963.37e-057.43e-05
speciesHaemophilus_parainfluenzae0.0963.42e-057.51e-05
speciesBacteroides_nordii-0.0963.46e-057.56e-05
genusSiphoviridae_noname0.0953.62e-057.86e-05
genusHaemophilus0.0953.63e-057.86e-05
familyBacteroidales_noname-0.0953.83e-058.18e-05
genusBacteroidales_noname-0.0953.83e-058.18e-05
speciesBacteroidales_bacterium_ph8-0.0953.83e-058.18e-05
genusTuricibacter0.0953.94e-058.38e-05
speciesBifidobacterium_animalis0.0954.24e-058.97e-05
speciesLactobacillus_rhamnosus0.0944.52e-059.52e-05
orderPasteurellales0.0944.56e-059.52e-05
familyPasteurellaceae0.0944.56e-059.52e-05
speciesEubacterium_siraeum-0.0944.61e-059.59e-05
speciesClostridium_symbiosum0.0944.7e-059.73e-05
speciesHaemophilus_sputorum0.0944.85e-050.0001
speciesWeissella_confusa0.0918.23e-050.000169
speciesLactobacillus_plantarum0.0918.66e-050.000177
speciesButyrivibrio_crossotus-0.099.24e-050.000188
genusCoprobacter-0.0890.0001170.000236
speciesCoprobacter_fastidiosus-0.0890.0001170.000236
speciesBlautia_hydrogenotrophica0.0880.0001470.000295
genusPantoea0.0880.0001490.000297
speciesPantoea_unclassified0.0880.0001490.000297
speciesLactobacillus_amylovorus0.0870.0001530.000303
genusSutterellaceae_unclassified-0.0870.0001540.000304
speciesMethanobrevibacter_unclassified-0.0870.0001790.000352
speciesParabacteroides_distasonis-0.0860.0001840.00036
genusCatenibacterium-0.0860.0001890.000367
speciesCatenibacterium_mitsuokai-0.0860.0001890.000367
speciesBacteroides_finegoldii-0.0860.0002030.000393
speciesAlistipes_sp_HGB5-0.0860.0002130.00041
speciesPropionibacterium_freudenreichii0.0850.0002330.000447
genusBarnesiella-0.0850.0002390.000453
speciesTuricibacter_unclassified0.0850.0002390.000453
speciesBarnesiella_intestinihominis-0.0850.0002390.000453
speciesLactobacillus_vaginalis0.0840.0002650.0005
speciesEggerthella_sp_1_3_56FAA0.0840.0002890.000543
speciesPrevotella_buccae0.0840.0002970.000556
familyClostridiales_Family_XI_Incertae_Sedis0.0830.0003180.000593
classMethanobacteria-0.0820.0003660.000675
orderMethanobacteriales-0.0820.0003660.000675
familyMethanobacteriaceae-0.0820.0003660.000675
speciesLactobacillus_crispatus0.0820.0003690.000678
speciesBifidobacterium_breve0.0820.0003880.00071
speciesAnaerostipes_unclassified0.0820.0003950.00072
speciesClostridium_hathewayi0.0820.0004010.000728
speciesAnaerotruncus_unclassified-0.0820.0004120.000745
speciesErysipelotrichaceae_bacterium_3_1_530.0810.0004680.000843
speciesEscherichia_unclassified0.0810.0004910.000881
speciesPrevotella_stercorea-0.080.0005320.000951
speciesParabacteroides_johnsonii-0.0790.0005860.00104
genusCampylobacter0.0790.0006520.00116
genusProteus0.0790.0006750.00119
speciesHaemophilus_paraphrohaemolyticus0.0780.0006830.0012
classNegativicutes0.0780.0007220.00126
orderSelenomonadales0.0780.0007220.00126
speciesFusobacterium_ulcerans0.0780.0007680.00134
speciesBacteroides_cellulosilyticus-0.0770.0008130.00141
speciesEubacterium_ventriosum0.0770.0008330.00144
speciesBifidobacterium_bifidum0.0770.0008570.00148
speciesBilophila_unclassified-0.0770.0008890.00153
familyCampylobacteraceae0.0770.000910.00156
speciesEnterobacter_aerogenes0.0770.0009140.00156
genusMethanobrevibacter-0.0750.001160.00196
genusBilophila-0.0750.001160.00196
speciesClostridium_clostridioforme0.0750.001170.00197
speciesBacteroides_salyersiae-0.0750.001230.00207
speciesMethanobrevibacter_smithii-0.0750.001260.00211
speciesBacteroides_intestinalis-0.0740.00130.00217
genusAnaerotruncus-0.0740.001430.00238
speciesRuminococcus_sp_JC3040.0730.001680.00278
genusMethanosphaera-0.0720.00190.00312
speciesMethanosphaera_stadtmanae-0.0720.00190.00312
speciesStreptococcus_phage_Sfi210.0710.002220.00364
speciesDorea_unclassified-0.0710.002250.00367
genusMegasphaera0.070.002320.00378
speciesLactobacillus_oris0.070.002540.00412
genusMyoviridae_noname0.0690.002680.00433
phylumViruses_noname0.0690.002790.00448
classViruses_noname0.0690.002790.00448
speciesOscillibacter_sp_KLE_1745-0.0690.002860.00458
phylumEuryarchaeota-0.0690.002920.00466
genusHoldemania0.0680.003360.00534
genusPropionibacterium0.0680.003460.00548
speciesOscillibacter_sp_KLE_1728-0.0680.003490.00551
speciesBacteroides_fragilis0.0670.003920.00617
genusSuccinatimonas-0.0660.004090.00639
speciesSuccinatimonas_hippei-0.0660.004090.00639
speciesProteus_mirabilis0.0660.004240.0066
speciesBacteroides_clarus-0.0660.004530.00703
familyStaphylococcaceae0.0650.004930.00763
speciesFusobacterium_varium0.0650.004950.00764
genusMorganella0.0650.00520.00797
speciesMorganella_morganii0.0650.00520.00797
speciesPeptostreptococcus_anaerobius0.0640.005510.00842
classEpsilonproteobacteria0.0640.005840.00886
orderCampylobacterales0.0640.005840.00886
familySuccinivibrionaceae-0.0640.00590.00893
speciesEubacterium_dolichum0.0630.006210.00936
genusStaphylococcus0.0630.006450.0097
speciesParvimonas_unclassified0.0630.006740.0101
genusParvimonas0.0630.006810.0102
speciesStreptococcus_lutetiensis0.0610.008090.012
genusButyricicoccus0.060.00890.0132
speciesButyricicoccus_pullicaecorum0.060.00890.0132
speciesCollinsella_unclassified-0.060.00920.0136
speciesBacteroides_eggerthii-0.060.00970.0143
phylumVerrucomicrobia-0.060.009940.0143
classVerrucomicrobiae-0.060.009940.0143
orderVerrucomicrobiales-0.060.009940.0143
familyVerrucomicrobiaceae-0.060.009940.0143
genusAkkermansia-0.060.009940.0143
speciesAkkermansia_muciniphila-0.060.009940.0143
speciesParabacteroides_unclassified-0.0590.01020.0147
orderCaudovirales0.0590.0110.0157
speciesRuminococcus_lactaris0.0590.0110.0157
speciesStreptococcus_infantarius0.0580.01180.0168
speciesClostridium_asparagiforme0.0580.01180.0168
genusPhascolarctobacterium-0.0580.01270.0179
speciesPhascolarctobacterium_succinatutens-0.0580.01270.0179
speciesBacteroides_massiliensis-0.0570.01340.0189
speciesBacteroides_coprophilus-0.0560.0150.0211
speciesLeuconostoc_lactis0.0560.01530.0214
speciesBilophila_wadsworthia-0.0560.01530.0214
speciesBacteroides_plebeius-0.0560.01540.0214
speciesLactococcus_phage_P6800.0550.01760.0244
genusParasutterella-0.0540.01940.0268
speciesParasutterella_excrementihominis-0.0540.01940.0268
speciesEubacterium_biforme-0.0540.01960.027
speciesErysipelotrichaceae_bacterium_5_2_54FAA0.0540.01980.0272
orderViruses_noname0.0540.02010.0275
speciesHoldemania_sp_AP20.0540.02050.028
speciesLactobacillus_reuteri0.0530.02160.0294
speciesClostridiales_bacterium_1_7_47FAA0.0530.02310.0313
familyAcidaminococcaceae-0.0520.02350.0318
speciesLachnospiraceae_bacterium_2_1_46FAA0.0520.02520.034
speciesParabacteroides_sp_D13-0.0520.02550.0343
speciesBacteroides_sp_2_1_22-0.0510.02630.0353
speciesButyrivibrio_unclassified0.0510.0290.0388
speciesKlebsiella_unclassified0.0490.0340.0453
orderPseudomonadales0.0490.03470.0461
speciesRuminococcus_champanellensis-0.0490.03580.0475
speciesLactobacillus_acidophilus0.0480.03880.0513
genusOlsenella0.0470.04430.0584
speciesLactococcus_phage_phi70.0460.04670.0614
speciesBacteroides_coprocola-0.0460.04750.0623
speciesLactobacillus_sanfranciscensis0.0460.0490.0641
speciesMegasphaera_elsdenii0.0450.05270.0687
speciesClostridium_sp_ATCC_BAA_442-0.0450.05360.0697
speciesBacteroides_pectinophilus-0.0440.05590.0725
speciesClostridium_citroniae0.0440.05650.0731
speciesC2likevirus_unclassified-0.0430.06180.0797
genusLambdalikevirus0.0430.06270.0806
genusCoriobacteriaceae_noname0.0430.06440.0826
genusC2likevirus-0.0420.06880.088
genusFlavonifractor0.0420.07060.0898
speciesFlavonifractor_plautii0.0420.07060.0898
speciesCoriobacteriaceae_bacterium_phI0.0420.07140.0906
speciesBacteroides_oleiciplenus-0.0410.07580.0959
speciesEubacterium_rectale0.040.08220.104
genusAcidaminococcaceae_unclassified-0.040.08390.106
familyViruses_noname0.0390.0880.11
genusViruses_noname0.0390.0880.11
speciesBacteroides_dorei-0.0390.08820.11
speciesAcidaminococcus_unclassified-0.0390.08840.11
genusButyrivibrio-0.0390.09380.117
speciesSlackia_piriformis-0.0380.09640.119
speciesPorphyromonas_asaccharolytica-0.0380.10.123
speciesFusobacterium_mortiferum0.0380.10.123
familyBurkholderiales_noname-0.0380.1030.127
speciesPrevotella_bivia0.0370.1070.131
genusBurkholderiales_noname-0.0360.1230.15
speciesBurkholderiales_bacterium_1_1_47-0.0360.1230.15
genusSlackia-0.0340.1450.176
speciesOlsenella_unclassified0.0340.1470.178
speciesEnterobacteria_phage_HK5440.0330.1510.183
speciesEubacterium_eligens-0.0330.1570.19
genusSutterella-0.0320.1680.202
familyClostridiales_noname0.030.1940.233
speciesLactococcus_phage_jm20.030.20.24
familySiphoviridae0.030.2010.24
speciesMitsuokella_multacida-0.030.2010.24
speciesCollinsella_tanakaei-0.0290.2050.244
speciesSutterella_wadsworthensis-0.0290.2090.248
genusPorphyromonas-0.0290.2130.252
speciesBacteroides_sp_3_1_19-0.0280.2340.276
genusClostridiales_noname0.0270.2360.278
speciesRoseburia_unclassified0.0270.2380.279
speciesClostridium_sp_KLE_17550.0270.2440.286
speciesMegamonas_unclassified0.0270.2450.286
genusMegamonas0.0270.2460.287
speciesLactobacillus_ruminis-0.0250.2750.32
speciesBacteroides_salanitronis-0.0250.2810.326
genusPeptoniphilus0.0250.2840.328
speciesAlistipes_sp_AP11-0.0250.2840.328
speciesEubacterium_sp_3_1_310.0230.3120.359
orderAeromonadales-0.0230.3150.362
speciesClostridium_spiroforme0.0230.330.378
genusClostridiaceae_noname-0.0220.3320.379
speciesClostridiaceae_bacterium_JC118-0.0220.3320.379
genusPseudoflavonifractor-0.0220.3360.38
speciesPseudoflavonifractor_capillosus-0.0220.3360.38
speciesLachnospiraceae_bacterium_8_1_57FAA-0.0220.3360.38
speciesLachnospiraceae_bacterium_3_1_57FAA_CT10.0220.3510.396
speciesMegamonas_funiformis-0.0210.3740.421
familyPropionibacteriaceae0.020.3810.428
speciesCoprobacillus_sp_29_1-0.020.3890.436
speciesHoldemania_unclassified0.020.390.436
speciesOdoribacter_unclassified0.0190.4060.453
speciesCoprococcus_eutactus-0.0190.4130.46
genusTunalikevirus0.0190.4180.463
speciesCoprobacillus_sp_D60.0190.4180.463
genusRuminococcaceae_noname-0.0180.4270.47
speciesEubacterium_cylindroides0.0180.4270.47
speciesRuminococcaceae_bacterium_D16-0.0180.4270.47
speciesRoseburia_hominis-0.0180.4290.471
speciesSubdoligranulum_sp_4_3_54A2FAA-0.0180.4370.479
speciesAcidaminococcus_fermentans-0.0180.4440.485
speciesCoprococcus_sp_ART55_1-0.0180.4450.485
speciesAcidaminococcus_intestini0.0170.4540.494
speciesHoldemania_filiformis0.0170.460.499
speciesBacteroides_sp_1_1_6-0.0170.4630.501
genusAcidaminococcus-0.0160.4790.517
speciesAnaerotruncus_colihominis-0.0160.4850.523
speciesBifidobacterium_angulatum-0.0160.4990.537
speciesStreptococcus_pasteurianus0.0140.5350.574
speciesDialister_succinatiphilus0.0140.5380.576
speciesEubacterium_limosum0.0140.5580.596
speciesSubdoligranulum_unclassified-0.0130.5740.612
familyPodoviridae0.0130.5820.619
speciesCollinsella_intestinalis-0.0120.6080.645
speciesOdoribacter_laneus-0.0110.6330.67
speciesBacteroides_barnesiae-0.0110.6440.68
genusSubdoligranulum-0.0110.6470.682
speciesKlebsiella_phage_KP360.010.6620.696
speciesMegasphaera_unclassified0.0090.6840.717
speciesLactococcus_phage_bIL670.0090.6920.724
speciesClostridium_leptum0.0080.7310.763
speciesRuminococcus_callidus-0.0080.7370.768
speciesMegamonas_rupellensis0.0080.7450.775
speciesParabacteroides_sp_20_30.0070.7620.79
speciesAlistipes_unclassified0.0060.790.818
speciesPorphyromonas_uenonis0.0060.8040.83
speciesBacteroides_fluxus0.0050.8130.838
speciesLactococcus_phage_936_sensu_lato0.0050.8280.851
speciesBacteroides_sp_4_3_47FAA-0.0050.830.852
speciesMitsuokella_unclassified0.0050.8390.859
genusPyramidobacter0.0050.8440.86
speciesPyramidobacter_piscolens0.0050.8440.86
phylumSynergistetes-0.0040.8530.862
classSynergistia-0.0040.8530.862
orderSynergistales-0.0040.8530.862
familySynergistaceae-0.0040.8530.862
genusMitsuokella0.0030.9130.921
speciesLachnospiraceae_bacterium_3_1_46FAA0.0020.9410.947
speciesClostridium_sp_L2_500.0010.9640.968
speciesSutterella_parvirubra-0.0010.9710.973
speciesMegamonas_hypermegale0.0010.9790.979
Click on arrows to sort table data. Shift+click to sort by multiple columns.

Association of query gene abundance with clinical phenotypes:

Boxplots:


Statistics:

pheno country case_n ctrl_n case_mean ctrl_mean pvalue rank percentile
Ulcerative colitisSpain78660.05436078113340.03893361824550.0035099027176410733.53962
Liver cirrhosisChina1201140.06468951112750.04497792859310.0198554408991221841.0427
Crohns diseaseSpain17660.06689899309340.03893361824550.09604104277621365445.3998
Type II diabetesSweden53920.06284181649390.06474729388450.5054836413141626455.0762
Type II diabetesChina1831850.04802538994010.05469411477110.5285187775612161471.43
ObesityDenmark1691230.0429492276370.04102106995170.6019931367762169971.3525
Colorectal cancerAustria64350.05801019941820.06547718128180.610970995982068669.9892
Rheumatoid arthritisChina127980.06637871990980.06548086538360.9251254805322823194.1441
Type II diabetesDenmark752770.03910583729840.04180567930130.9458810925252949996.6958
Click on arrows to sort table data. Shift+click to sort by multiple columns.

Citation:

Nayfach S, Fischbach MA, Pollard KS. MetaQuery: a web server for rapid annotation and quantitative analysis of specific genes in the human gut microbiome. Bioinformatics 2015;31(14). doi:10.1093/bioinformatics/btv382