MetaQuery: quantitative analysis of the human gut microbiome

Results

Estimated gene abundances and results from statistical analyses

Job details:

Submission date: 2021-01-24 09:46:41 PST
Job id & description: 2373, ada4
Query type: protein
Count queries & homologs: 40, 40
Min % identity & max e-value: 100%, 1e-5
Min % query & target coverage: 95%, 95%

Click here to download results

Table of contents:


Gut microbiome genes homologous to your query gene:

query_id target_id status kegg eggnog phylum genus query_cov target_cov percent_identity
469595.CSAG_023863801386CompleteK05810COG1496ProteobacteriaCitrobacter100.0100.0100.0
469608.HMPREF0485_026793801390CompleteK05810COG1496ProteobacteriaKlebsiella100.0100.0100.0
300268.SBO_26283801184CompleteK05810COG1496ProteobacteriaShigella100.0100.0100.0
T2D-108A_GL01866523798355CompleteK05810COG1496ProteobacteriaEnterobacter100.0100.0100.0
1006551.KOX_000103801117CompleteK05810COG1496ProteobacteriaKlebsiella100.0100.0100.0
656420.ERJG_046763801514CompleteK05810COG1496ProteobacteriaEscherichia100.0100.0100.0
SZEY-68A_GL00383573798229CompleteK05810COG1496ProteobacteriaEnterobacter100.0100.0100.0
716541.ECL_039253801251CompleteK05810COG1496ProteobacteriaEnterobacter100.0100.0100.0
SZEY-40A_GL00504373798177CompleteK05810COG1496ProteobacteriaEnterobacter100.0100.0100.0
1045856.EcWSU1_034023801136CompleteK05810COG1496ProteobacteriaEnterobacter100.0100.0100.0
290338.CKO_039153801179CompleteK05810COG1496ProteobacteriaCitrobacter100.0100.0100.0
MH0267_GL00440003984714CompleteK01500COG0590unknownunknown100.0100.0100.0
O2.CD2-0-PT_GL00786464010536Lack 5'-endK06017COG0590FirmicutesClostridium100.0100.0100.0
159207311-stool1_revised4144472CompleteK01500COG0590unknownunknown100.0100.0100.0
DOF008_GL00743404162759CompleteK01488COG1816unknownunknown100.0100.0100.0
O2.UC11-1_GL01062214115020CompleteK01500COG0590unknownunknown100.0100.0100.0
V1.CD20-0_GL00254754288980CompleteK01500COG0590Firmicutesunknown100.0100.0100.0
O2.UC48-0_GL02710944331948CompleteK01500COG0590unknownunknown100.0100.0100.0
MH0009_GL00141454386451CompleteK01500COG0590FirmicutesClostridium100.0100.0100.0
MH0358_GL00805164327109CompleteK06017COG0590FirmicutesClostridium100.0100.0100.0
O2.UC19-1_GL00576484375271CompleteK06017COG0590FirmicutesClostridium100.0100.0100.0
MH0368_GL01413444461495Lack 3'-endK01488COG1816FirmicutesStreptococcus100.0100.0100.0
MH0044_GL00506514454453CompleteK01500COG0590FirmicutesClostridium100.0100.0100.0
MH0409_GL00041624462927CompleteK01500COG0590unknownunknown100.0100.0100.0
MH0415_GL00009054486096Lack both endsK01488COG1816ProteobacteriaEscherichia100.0100.0100.0
MH0333_GL00240394554459CompleteK06017COG0590unknownunknown100.0100.0100.0
MH0251_GL00421074624192CompleteK06017COG0590unknownunknown100.0100.0100.0
457421.CBFG_059894690969CompleteK06017COG0590Firmicutesunknown100.0100.0100.0
V1.UC38-4_GL00476534708684CompleteK01488COG1816FirmicutesStreptococcus100.0100.0100.0
1042403.BALAC2494_011434642127CompleteK01500COG0590ActinobacteriaBifidobacterium100.0100.0100.0
V1.FI33_GL00079054808455Lack 5'-endK01500COG0590unknownunknown100.0100.0100.0
BGI-06A_GL00538045163738CompleteK06017COG0590unknownunknown100.0100.0100.0
V1.CD38-0_GL01057515129712Lack 5'-endK01485COG0590FirmicutesStreptococcus100.0100.0100.0
MH0006_GL00710735141134CompleteK06017COG0590unknownunknown100.0100.0100.0
469595.CSAG_023545227666CompleteK11991COG0590ProteobacteriaCitrobacter100.0100.0100.0
290338.CKO_002245286411CompleteK11991COG0590ProteobacteriaCitrobacter100.0100.0100.0
MH0204_GL00673745262246CompleteK11991COG0590ProteobacteriaKlebsiella100.0100.0100.0
MH0014_GL00747675318349CompleteK11991COG0590ProteobacteriaEscherichia100.0100.0100.0
MH0277_GL00512035325174Lack 3'-endK01488COG1816ProteobacteriaKlebsiella100.0100.0100.0
656449.ERFG_007775686466CompleteK11991COG0590ProteobacteriaEscherichia100.0100.0100.0
Click on arrows to sort table data. Shift+click to sort by multiple columns.

The abundance of your query across gut microbiome samples:




The prevalence of your query across gut microbiome samples:




Taxonomic groups correlated with your query gene:

tax_level tax_name spearman_rho pvalue qvalue
classGammaproteobacteria0.7056.38e-2813.01e-278
orderEnterobacteriales0.7025.03e-2787.91e-276
familyEnterobacteriaceae0.7025.03e-2787.91e-276
genusEscherichia0.6411.32e-2161.56e-214
speciesEscherichia_coli0.6232.13e-2012.01e-199
phylumProteobacteria0.571.97e-1611.55e-159
genusKlebsiella0.4791.16e-1077.82e-106
speciesKlebsiella_pneumoniae0.4581.7e-971e-95
genusPantoea0.4332.69e-861.27e-84
speciesPantoea_unclassified0.4332.69e-861.27e-84
familyClostridiaceae0.4035.99e-742.57e-72
genusClostridium0.4021.3e-735.11e-72
speciesEscherichia_unclassified0.46.98e-732.53e-71
orderLactobacillales0.3713.75e-621.26e-60
classBacilli0.3691.81e-615.7e-60
speciesStreptococcus_salivarius0.3543.36e-569.91e-55
familyStreptococcaceae0.3413.46e-529.61e-51
genusStreptococcus0.3361.41e-503.7e-49
genusEnterobacter0.327.1e-461.76e-44
speciesEnterobacter_cloacae0.327.78e-461.84e-44
familyFusobacteriaceae0.2963.28e-397.37e-38
speciesStreptococcus_anginosus0.2941.33e-382.85e-37
genusFusobacterium0.2924.08e-388.37e-37
speciesRuminococcus_gnavus0.2925.72e-381.12e-36
genusCoprobacillus0.291.13e-372.13e-36
phylumFusobacteria0.291.35e-372.28e-36
classFusobacteriia0.291.35e-372.28e-36
orderFusobacteriales0.291.35e-372.28e-36
speciesCoprobacillus_unclassified0.2853.5e-365.7e-35
familyRikenellaceae-0.2813.2e-354.87e-34
genusAlistipes-0.2813.2e-354.87e-34
speciesClostridium_ramosum0.2798.13e-351.2e-33
genusVeillonella0.2765.51e-347.88e-33
genusCitrobacter0.2741.87e-332.6e-32
speciesVeillonella_parvula0.2733.13e-334.22e-32
speciesMegasphaera_micronuciformis0.2684.1e-325.38e-31
speciesLachnospiraceae_bacterium_7_1_58FAA-0.2685.21e-326.65e-31
speciesCitrobacter_freundii0.2675.89e-327.32e-31
speciesCitrobacter_unclassified0.2621.17e-301.42e-29
speciesClostridium_nexile0.2594.15e-304.9e-29
familyBacillales_noname0.2562.13e-292.39e-28
genusGemella0.2562.13e-292.39e-28
speciesStreptococcus_vestibularis0.2521.64e-281.8e-27
familyEnterococcaceae0.2498.17e-288.76e-27
genusEnterococcus0.2498.89e-289.32e-27
speciesClostridium_perfringens0.2449.33e-279.57e-26
speciesFusobacterium_nucleatum0.2441.2e-261.21e-25
speciesSubdoligranulum_unclassified-0.2413.69e-263.63e-25
speciesClostridium_bolteae0.2414.45e-264.29e-25
speciesBifidobacterium_dentium0.245.25e-264.96e-25
speciesVeillonella_unclassified0.245.4e-265e-25
speciesClostridium_hathewayi0.2381.67e-251.52e-24
speciesKlebsiella_oxytoca0.2373.46e-253.08e-24
speciesOscillibacter_unclassified-0.2355.9e-255.16e-24
genusSubdoligranulum-0.2357.28e-256.25e-24
orderBacillales0.2357.46e-256.29e-24
familyOscillospiraceae-0.2331.68e-241.35e-23
genusOscillibacter-0.2331.68e-241.35e-23
speciesStreptococcus_parasanguinis0.2331.69e-241.35e-23
speciesStreptococcus_gordonii0.2314.38e-243.45e-23
speciesEubacterium_siraeum-0.236.4e-244.95e-23
familyPorphyromonadaceae-0.2272.37e-231.8e-22
speciesAlistipes_shahii-0.2273.44e-232.58e-22
speciesLactobacillus_salivarius0.2255.65e-234.17e-22
speciesAlistipes_putredinis-0.2257.07e-235.13e-22
familyLactobacillaceae0.2257.34e-235.25e-22
speciesStreptococcus_mitis_oralis_pneumoniae0.2231.47e-221.04e-21
genusLactobacillus0.2223.03e-222.1e-21
speciesVeillonella_dispar0.227.61e-225.21e-21
speciesClostridium_symbiosum0.2171.9e-211.28e-20
phylumBacteroidetes-0.2171.97e-211.28e-20
classBacteroidia-0.2171.98e-211.28e-20
orderBacteroidales-0.2171.98e-211.28e-20
genusMegasphaera0.2154.7e-213e-20
familyMicrococcaceae0.2155.17e-213.25e-20
genusBlautia0.2155.33e-213.31e-20
genusRothia0.2155.89e-213.61e-20
speciesClostridium_sp_L2_500.2149.49e-215.74e-20
familyActinomycetaceae0.2121.69e-201.01e-19
genusWeissella0.2121.83e-201.08e-19
speciesLactobacillus_mucosae0.2122.28e-201.33e-19
genusOdoribacter-0.2112.76e-201.59e-19
speciesRothia_mucilaginosa0.2112.93e-201.67e-19
speciesStreptococcus_sanguinis0.215.24e-202.94e-19
genusActinomyces0.2095.89e-203.27e-19
speciesBacteroides_uniformis-0.2096.09e-203.34e-19
genusSolobacterium0.2089.99e-205.36e-19
speciesSolobacterium_moorei0.2089.99e-205.36e-19
speciesAnaerotruncus_unclassified-0.2071.73e-199.17e-19
speciesOdoribacter_splanchnicus-0.2062.08e-191.09e-18
speciesEggerthella_unclassified0.2062.19e-191.14e-18
orderActinomycetales0.2053.97e-192.04e-18
speciesClostridium_leptum-0.2054.14e-192.1e-18
familyLeuconostocaceae0.2044.93e-192.48e-18
speciesVeillonella_atypica0.2045.28e-192.62e-18
speciesStreptococcus_australis0.2011.43e-187.03e-18
speciesClostridiales_bacterium_1_7_47FAA0.2011.59e-187.74e-18
speciesKlebsiella_unclassified0.1993.38e-181.63e-17
speciesLactobacillus_fermentum0.1986.5e-183.1e-17
genusEggerthella0.1951.95e-179.2e-17
speciesWeissella_confusa0.1933.17e-171.48e-16
familyBacteroidales_noname-0.191.05e-164.77e-16
genusBacteroidales_noname-0.191.05e-164.77e-16
speciesBacteroidales_bacterium_ph8-0.191.05e-164.77e-16
genusPseudoflavonifractor-0.1873.65e-161.63e-15
speciesPseudoflavonifractor_capillosus-0.1873.65e-161.63e-15
genusCoprobacter-0.1873.72e-161.63e-15
speciesCoprobacter_fastidiosus-0.1873.72e-161.63e-15
familyPeptostreptococcaceae0.1849.91e-164.29e-15
speciesLactococcus_garvieae0.1831.49e-156.39e-15
speciesWeissella_cibaria0.1831.78e-157.57e-15
speciesAlistipes_senegalensis-0.1822.07e-158.72e-15
speciesStreptococcus_mutans0.1822.27e-159.48e-15
speciesEnterococcus_faecalis0.1822.51e-151.04e-14
genusBarnesiella-0.1812.78e-151.13e-14
speciesBarnesiella_intestinihominis-0.1812.78e-151.13e-14
orderBurkholderiales-0.1813.18e-151.28e-14
speciesPrevotella_buccae0.183.9e-151.56e-14
speciesSutterella_wadsworthensis-0.184.01e-151.59e-14
speciesFusobacterium_ulcerans0.1771.17e-144.6e-14
speciesCampylobacter_concisus0.1771.37e-145.34e-14
speciesEubacterium_rectale-0.1761.6e-146.19e-14
familySutterellaceae-0.1761.69e-146.49e-14
speciesLachnospiraceae_bacterium_9_1_43BFAA0.1752.6e-149.9e-14
genusParabacteroides-0.1743.09e-141.17e-13
classBetaproteobacteria-0.1743.41e-141.28e-13
genusSutterella-0.1727.56e-142.81e-13
genusCampylobacter0.171.3e-134.79e-13
genusPeptostreptococcaceae_noname0.171.44e-135.27e-13
speciesFusobacterium_varium0.1691.61e-135.85e-13
speciesEnterococcus_faecium0.1692.05e-137.39e-13
familyCampylobacteraceae0.1664.36e-131.56e-12
speciesAlistipes_onderdonkii-0.1665.82e-132.07e-12
genusClostridiales_noname0.1631.15e-124.05e-12
speciesFusobacterium_mortiferum0.1621.62e-125.66e-12
genusRuminococcaceae_noname-0.1621.94e-126.68e-12
speciesRuminococcaceae_bacterium_D16-0.1621.94e-126.68e-12
speciesC2likevirus_unclassified-0.1621.99e-126.81e-12
classEpsilonproteobacteria0.1622.08e-127.01e-12
orderCampylobacterales0.1622.08e-127.01e-12
speciesStreptococcus_infantarius0.1612.45e-128.2e-12
speciesClostridium_citroniae0.1612.47e-128.21e-12
speciesAlistipes_finegoldii-0.1594.49e-121.48e-11
genusC2likevirus-0.1594.78e-121.57e-11
genusAggregatibacter0.1587.19e-122.34e-11
genusPeptostreptococcus0.1561.08e-113.49e-11
phylumVerrucomicrobia-0.1561.3e-114.04e-11
classVerrucomicrobiae-0.1561.3e-114.04e-11
orderVerrucomicrobiales-0.1561.3e-114.04e-11
familyVerrucomicrobiaceae-0.1561.3e-114.04e-11
genusAkkermansia-0.1561.3e-114.04e-11
speciesAkkermansia_muciniphila-0.1561.3e-114.04e-11
speciesAlistipes_indistinctus-0.1551.46e-114.5e-11
speciesAnaerostipes_unclassified0.1498.62e-112.64e-10
genusButyrivibrio-0.1462.35e-107.16e-10
speciesHaemophilus_parainfluenzae0.1452.76e-108.35e-10
speciesClostridium_bartlettii0.1452.95e-108.87e-10
genusHaemophilus0.1434.68e-101.4e-09
orderPasteurellales0.1434.93e-101.45e-09
familyPasteurellaceae0.1434.93e-101.45e-09
speciesLactobacillus_gasseri0.1435.2e-101.52e-09
speciesLactobacillus_vaginalis0.1435.46e-101.59e-09
familyVeillonellaceae0.1435.54e-101.6e-09
speciesEnterobacter_aerogenes0.1419.04e-102.6e-09
genusCoprococcus-0.141.16e-093.32e-09
speciesClostridium_clostridioforme0.1391.69e-094.81e-09
genusMorganella0.1364.02e-091.13e-08
speciesMorganella_morganii0.1364.02e-091.13e-08
speciesAggregatibacter_segnis0.1354.18e-091.17e-08
speciesBlautia_producta0.1354.34e-091.2e-08
speciesParabacteroides_merdae-0.1354.49e-091.24e-08
speciesKlebsiella_sp_MS_92_30.1345.49e-091.51e-08
classErysipelotrichia0.1338.14e-092.2e-08
orderErysipelotrichales0.1338.14e-092.2e-08
familyErysipelotrichaceae0.1338.14e-092.2e-08
speciesStreptococcus_lutetiensis0.1338.39e-092.25e-08
genusAnaerotruncus-0.1328.96e-092.39e-08
speciesBifidobacterium_adolescentis-0.1321.09e-082.89e-08
speciesLachnospiraceae_bacterium_3_1_46FAA-0.131.6e-084.22e-08
speciesPeptostreptococcus_stomatis0.1282.46e-086.45e-08
genusActinobacillus0.1283.08e-087.99e-08
speciesActinobacillus_unclassified0.1283.08e-087.99e-08
speciesLachnospiraceae_bacterium_6_1_63FAA0.1283.16e-088.15e-08
familyMyoviridae0.1246.92e-081.78e-07
speciesOscillibacter_sp_KLE_1728-0.1238.58e-082.19e-07
speciesMegamonas_unclassified0.1239.67e-082.45e-07
speciesRoseburia_hominis-0.1239.95e-082.51e-07
genusMegamonas0.1221.14e-072.86e-07
speciesAlistipes_sp_HGB5-0.1221.2e-073e-07
speciesLactobacillus_oris0.1211.41e-073.5e-07
speciesBacteroides_fragilis0.1211.43e-073.53e-07
speciesAlistipes_sp_AP11-0.1211.68e-074.13e-07
speciesLachnospiraceae_bacterium_2_1_58FAA0.121.8e-074.4e-07
speciesEubacterium_ramulus-0.121.92e-074.67e-07
genusProteus0.1192.34e-075.66e-07
speciesOscillibacter_sp_KLE_1745-0.1192.52e-076.07e-07
speciesGemella_morbillorum0.1182.8e-076.71e-07
speciesCoprococcus_sp_ART55_1-0.1173.98e-079.49e-07
genusPyramidobacter0.1156.17e-071.46e-06
speciesPyramidobacter_piscolens0.1156.17e-071.46e-06
speciesBifidobacterium_pseudocatenulatum0.1156.42e-071.51e-06
genusEubacterium-0.1131e-062.34e-06
familyEubacteriaceae-0.1131.02e-062.37e-06
phylumSynergistetes0.1121.23e-062.8e-06
classSynergistia0.1121.23e-062.8e-06
orderSynergistales0.1121.23e-062.8e-06
familySynergistaceae0.1121.23e-062.8e-06
speciesButyrivibrio_unclassified-0.1121.26e-062.86e-06
speciesLactobacillus_rhamnosus0.1111.55e-063.5e-06
speciesLachnospiraceae_bacterium_8_1_57FAA-0.1092.24e-065.03e-06
genusLeuconostoc0.1092.37e-065.3e-06
speciesHaemophilus_paraphrohaemolyticus0.1092.43e-065.41e-06
familyBacteroidaceae-0.1082.57e-065.67e-06
genusBacteroides-0.1082.57e-065.67e-06
speciesProteus_mirabilis0.1082.76e-066.06e-06
familyRuminococcaceae-0.1082.83e-066.18e-06
speciesHaemophilus_sputorum0.1082.88e-066.26e-06
speciesLactobacillus_crispatus0.1073.23e-066.99e-06
speciesLachnospiraceae_bacterium_2_1_46FAA0.1073.89e-068.38e-06
speciesLactobacillus_plantarum0.1064.48e-069.61e-06
genusPrevotella0.1011.12e-052.39e-05
speciesEggerthella_lenta0.0991.88e-054e-05
speciesLeuconostoc_lactis0.0991.91e-054.04e-05
speciesLachnospiraceae_bacterium_5_1_57FAA0.0991.92e-054.05e-05
speciesParaprevotella_xylaniphila-0.0991.95e-054.09e-05
speciesMitsuokella_unclassified-0.0991.98e-054.14e-05
speciesCoprococcus_comes-0.0972.44e-055.07e-05
speciesMegasphaera_unclassified0.0972.75e-055.69e-05
speciesPrevotella_copri0.0963.1e-056.39e-05
speciesBacteroides_plebeius0.0963.43e-057.04e-05
speciesBacteroides_vulgatus-0.0953.78e-057.72e-05
familyClostridiales_Family_XI_Incertae_Sedis0.0953.8e-057.73e-05
speciesCollinsella_aerofaciens-0.0944.78e-059.68e-05
genusMitsuokella-0.0944.87e-059.82e-05
speciesEubacterium_ventriosum-0.0945.05e-050.000101
genusFlavonifractor0.0935.15e-050.000103
speciesFlavonifractor_plautii0.0935.15e-050.000103
speciesPrevotella_stercorea0.0935.3e-050.000105
speciesParaprevotella_clara-0.0926.26e-050.000124
speciesMethanobrevibacter_smithii-0.0926.78e-050.000133
speciesParaprevotella_unclassified-0.0917.95e-050.000156
genusParaprevotella-0.0918.76e-050.000171
genusMethanobrevibacter-0.099.25e-050.00018
speciesDorea_longicatena-0.099.52e-050.000184
speciesEnterobacteria_phage_HK5440.090.0001050.000202
genusCollinsella-0.0890.0001110.000213
classMethanobacteria-0.0890.0001140.000216
orderMethanobacteriales-0.0890.0001140.000216
familyMethanobacteriaceae-0.0890.0001140.000216
phylumEuryarchaeota-0.0890.0001220.00023
speciesCoprococcus_eutactus-0.0880.0001390.000261
genusErysipelotrichaceae_noname0.0870.0001590.000298
classNegativicutes0.0870.0001780.000331
orderSelenomonadales0.0870.0001780.000331
speciesBacteroides_ovatus-0.0860.0002050.000379
speciesBacteroides_coprocola0.0850.000220.000406
speciesStreptococcus_pasteurianus0.0840.000270.000496
genusLachnospiraceae_noname0.0840.0002880.000527
speciesBifidobacterium_breve0.0840.00030.000547
speciesLactobacillus_amylovorus0.0820.0003640.000658
speciesLachnospiraceae_bacterium_1_4_56FAA0.0820.0003640.000658
speciesBlautia_hydrogenotrophica-0.0820.0003810.000686
speciesButyrivibrio_crossotus-0.0810.0004850.00087
speciesEubacterium_limosum0.080.000550.000983
speciesBacteroides_oleiciplenus0.0790.0005980.00107
speciesMegasphaera_elsdenii0.0790.000660.00117
genusOxalobacter-0.0780.000720.00127
speciesOxalobacter_formigenes-0.0780.000720.00127
familySiphoviridae-0.0780.0007550.00132
familyOxalobacteraceae-0.0780.0007790.00136
speciesClostridium_asparagiforme0.0760.000960.00167
speciesRuminococcus_torques0.0750.001170.00203
familyClostridiales_noname0.0750.001180.00204
speciesDesulfovibrio_desulfuricans-0.0750.001220.0021
genusLambdalikevirus0.0740.001340.0023
speciesLactobacillus_sanfranciscensis0.0740.001390.00238
speciesMegamonas_rupellensis0.0730.00170.0029
speciesOdoribacter_unclassified-0.0720.001750.00297
speciesRoseburia_intestinalis-0.0720.00180.00305
genusParvimonas0.0710.002180.00366
speciesParvimonas_unclassified0.0710.002180.00366
speciesBacteroides_cellulosilyticus-0.0690.002660.00445
speciesAcidaminococcus_fermentans0.0690.002960.00494
genusAcidaminococcaceae_unclassified-0.0690.002990.00497
speciesRoseburia_unclassified-0.0670.003610.00598
speciesParabacteroides_sp_D13-0.0650.004790.00791
speciesBacteroides_sp_2_1_22-0.0650.004910.00807
speciesBacteroides_dorei-0.0650.005070.00831
speciesMegamonas_hypermegale0.0650.00520.00849
genusMyoviridae_noname0.0640.005450.00887
speciesHoldemania_filiformis-0.0640.005840.00947
genusDesulfovibrio-0.0620.007190.0116
speciesAcidaminococcus_unclassified-0.0610.0080.0129
speciesCoprococcus_catus-0.060.00950.0153
speciesBifidobacterium_angulatum-0.0590.01010.0162
speciesRuminococcus_lactaris-0.0590.0110.0175
genusLactococcus0.0580.01150.0183
speciesDorea_unclassified-0.0580.01210.0192
phylumActinobacteria0.0580.01240.0195
classActinobacteria0.0580.01240.0195
speciesLactobacillus_casei_paracasei0.0570.01350.0212
speciesMegamonas_funiformis0.0570.01410.022
speciesLachnospiraceae_bacterium_1_1_57FAA0.0560.01460.0227
speciesBacteroides_intestinalis0.0560.01470.0228
speciesDesulfovibrio_piger-0.0560.01490.0231
speciesParabacteroides_distasonis-0.0560.01630.0251
speciesBacteroides_sp_1_1_6-0.0550.01690.026
speciesEubacterium_hallii-0.0550.0180.0276
speciesStreptococcus_phage_Sfi210.0550.01840.0281
familyAcidaminococcaceae-0.0540.01910.0291
genusPhascolarctobacterium-0.0540.01940.0293
speciesPhascolarctobacterium_succinatutens-0.0540.01940.0293
speciesAnaerostipes_hadrus-0.0530.02180.0329
speciesLactobacillus_delbrueckii0.0520.02320.0349
speciesRuminococcus_champanellensis-0.0520.02430.0364
speciesPorphyromonas_uenonis0.0520.02490.0371
speciesBacteroides_sp_3_1_190.0520.02490.0371
genusDorea-0.0520.02540.0377
familyPropionibacteriaceae-0.0520.02560.0379
speciesCoprobacillus_sp_D60.0510.0260.0384
speciesEubacterium_biforme-0.0510.02630.0387
speciesRuminococcus_sp_5_1_39BFAA-0.0510.0280.041
genusPeptoniphilus0.050.03190.0466
speciesBacteroides_coprophilus0.0490.03240.0472
speciesAcidaminococcus_intestini0.0490.03310.0481
familyViruses_noname0.0490.03410.0492
genusViruses_noname0.0490.03410.0492
orderPseudomonadales0.0480.03730.0537
genusSutterellaceae_unclassified-0.0480.03960.0568
genusTunalikevirus0.0470.04030.0576
speciesLactococcus_phage_936_sensu_lato-0.0470.04290.0612
speciesLactobacillus_reuteri0.0470.04310.0613
speciesBacteroides_stercoris0.0460.04590.0651
speciesLactobacillus_ruminis-0.0450.05140.0726
speciesBifidobacterium_catenulatum-0.0450.0520.0733
speciesErysipelotrichaceae_bacterium_3_1_530.0450.05350.0752
classClostridia-0.0440.05710.0794
orderClostridiales-0.0440.05710.0794
genusButyricimonas-0.0440.05720.0794
speciesButyricimonas_synergistica-0.0440.05720.0794
speciesBacteroides_salyersiae0.0430.06270.0868
speciesErysipelotrichaceae_bacterium_2_2_44A0.0430.06410.0885
orderBifidobacteriales0.0420.07220.0991
familyBifidobacteriaceae0.0420.07220.0991
genusCatenibacterium-0.0410.07440.101
speciesCatenibacterium_mitsuokai-0.0410.07440.101
speciesBacteroides_pectinophilus-0.0410.07480.102
speciesKlebsiella_phage_KP360.0390.08820.12
speciesBacteroides_barnesiae-0.0390.0890.12
speciesEggerthella_sp_1_3_56FAA0.0390.09420.127
speciesCoprobacillus_sp_29_10.0390.09520.128
genusParasutterella-0.0380.09670.129
speciesParasutterella_excrementihominis-0.0380.09670.129
orderAeromonadales0.0380.10.133
genusBurkholderiales_noname-0.0380.1010.134
speciesBurkholderiales_bacterium_1_1_47-0.0380.1010.134
familyBurkholderiales_noname-0.0380.1020.134
speciesSutterella_parvirubra0.0380.1020.134
genusBifidobacterium0.0370.1070.141
speciesBacteroides_thetaiotaomicron0.0370.110.144
speciesHoldemania_sp_AP20.0370.1140.149
familyLachnospiraceae0.0360.1210.158
speciesPeptostreptococcus_anaerobius0.0350.1260.163
speciesBacteroides_nordii0.0350.1260.163
genusRoseburia-0.0350.1290.167
speciesBacteroides_finegoldii0.0350.1320.17
genusAdlercreutzia-0.0340.1370.176
speciesAdlercreutzia_equolifaciens-0.0340.1370.176
speciesBacteroides_salanitronis-0.0340.1390.177
speciesAnaerotruncus_colihominis0.0340.1390.177
speciesRoseburia_inulinivorans-0.0340.1430.182
phylumFirmicutes0.0340.1440.183
genusRuminococcus-0.0340.1480.187
speciesCollinsella_tanakaei0.0330.1520.192
speciesRuminococcus_sp_JC3040.0330.1590.2
speciesStreptococcus_thermophilus-0.0320.1670.21
orderCaudovirales-0.0320.1680.21
speciesSlackia_piriformis-0.0320.1710.214
speciesBacteroides_caccae-0.0310.1760.219
speciesBacteroides_fluxus-0.0310.1770.22
speciesBilophila_wadsworthia0.0310.180.222
speciesParabacteroides_goldsteinii0.0310.180.222
speciesDorea_formicigenerans-0.0310.1860.229
genusFaecalibacterium-0.030.1930.237
speciesFaecalibacterium_prausnitzii-0.030.1930.237
genusHoldemania-0.030.1950.238
speciesMethanobrevibacter_unclassified-0.030.1960.239
speciesPrevotella_bivia0.030.2020.246
genusAnaerostipes0.0290.2120.257
speciesBacteroides_eggerthii0.0290.2150.26
familyStaphylococcaceae0.0290.2180.262
speciesClostridium_spiroforme-0.0280.2180.262
speciesBacteroides_xylanisolvens-0.0280.2260.271
genusOlsenella0.0270.2370.284
genusSuccinatimonas-0.0270.2390.285
speciesSuccinatimonas_hippei-0.0270.2390.285
speciesTuricibacter_sanguinis0.0270.240.285
speciesBifidobacterium_animalis0.0270.2430.288
speciesAlistipes_unclassified-0.0250.2730.323
speciesRuminococcus_bromii-0.0250.2750.325
speciesClostridium_sp_ATCC_BAA_4420.0250.2780.327
speciesBifidobacterium_longum0.0250.2790.328
genusGordonibacter0.0250.2850.332
speciesEubacterium_sp_3_1_31-0.0250.2850.332
speciesGordonibacter_pamelaeae0.0250.2850.332
speciesRuminococcus_callidus0.0250.2860.332
speciesLactococcus_phage_P680-0.0240.2920.339
familySuccinivibrionaceae-0.0220.3320.384
genusButyricicoccus0.0220.3350.385
speciesButyricicoccus_pullicaecorum0.0220.3350.385
speciesPeptostreptococcaceae_noname_unclassified0.0220.3350.385
genusBilophila0.0210.3750.43
speciesBilophila_unclassified0.020.380.434
orderViruses_noname0.020.3830.437
genusStaphylococcus0.0190.40.455
speciesParabacteroides_sp_20_3-0.0190.4040.458
speciesLactococcus_phage_jm20.0190.4120.466
speciesErysipelotrichaceae_bacterium_21_3-0.0190.4180.472
speciesDialister_succinatiphilus0.0180.4250.479
genusMethanosphaera-0.0180.4390.492
speciesMethanosphaera_stadtmanae-0.0180.4390.492
speciesEubacterium_eligens-0.0170.4640.519
genusPorphyromonas0.0160.480.536
speciesEubacterium_cylindroides-0.0160.4980.554
speciesSubdoligranulum_sp_4_3_54A2FAA-0.0150.5050.561
speciesBacteroides_massiliensis-0.0150.5140.57
genusClostridiaceae_noname-0.0150.5270.581
speciesClostridiaceae_bacterium_JC118-0.0150.5270.581
speciesOdoribacter_laneus0.0140.5320.585
speciesRuminococcus_obeum0.0140.5360.588
familyPrevotellaceae0.0140.5390.589
speciesBacteroides_clarus-0.0140.5390.589
genusPropionibacterium-0.0140.550.6
speciesParabacteroides_unclassified0.0140.5560.605
genusAcidaminococcus0.0130.5720.621
speciesBacteroides_faecis-0.0120.5910.64
speciesCollinsella_unclassified-0.0120.5980.646
speciesDialister_invisus-0.0120.6080.655
speciesEubacterium_dolichum0.0120.6190.666
speciesLactobacillus_acidophilus-0.010.6510.698
genusSlackia0.010.6590.705
genusSiphoviridae_noname0.0090.6820.728
phylumViruses_noname-0.0090.6870.73
classViruses_noname-0.0090.6870.73
classDeltaproteobacteria0.0090.7050.743
orderDesulfovibrionales0.0090.7050.743
familyDesulfovibrionaceae0.0090.7050.743
speciesErysipelotrichaceae_bacterium_5_2_54FAA0.0090.7060.743
speciesErysipelotrichaceae_bacterium_6_1_450.0090.7070.743
speciesPorphyromonas_asaccharolytica0.0080.7140.749
speciesMitsuokella_multacida-0.0080.7180.751
speciesBacteroides_sp_4_3_47FAA-0.0080.7290.761
genusDialister-0.0070.760.792
speciesCollinsella_intestinalis0.0070.7740.805
speciesLactococcus_lactis0.0060.780.808
speciesLachnospiraceae_bacterium_3_1_57FAA_CT1-0.0060.7810.808
speciesHoldemania_unclassified-0.0060.7850.811
speciesParabacteroides_johnsonii0.0050.8290.854
genusTuricibacter0.0050.8320.856
speciesOlsenella_unclassified0.0050.8370.857
speciesLactococcus_phage_phi70.0050.8370.857
familyPodoviridae0.0040.850.868
speciesClostridium_sp_KLE_17550.0040.8520.869
speciesPropionibacterium_freudenreichii-0.0040.8690.884
orderCoriobacteriales0.0030.890.901
familyCoriobacteriaceae0.0030.890.901
speciesTuricibacter_unclassified-0.0030.8950.905
speciesLactococcus_phage_bIL67-0.0010.9570.965
speciesCoriobacteriaceae_bacterium_phI-0.0010.970.976
speciesLachnospiraceae_bacterium_5_1_63FAA0.0010.9770.98
genusCoriobacteriaceae_noname0.0010.9780.98
speciesBifidobacterium_bifidum0.00.9950.995
Click on arrows to sort table data. Shift+click to sort by multiple columns.

Association of query gene abundance with clinical phenotypes:

Boxplots:


Statistics:

pheno country case_n ctrl_n case_mean ctrl_mean pvalue rank percentile
Liver cirrhosisChina1201140.05676493491350.01400736753231.01871602758e-0913174.42407
Type II diabetesDenmark752770.01680570872470.008855957117786.88232021938e-0711343.71718
Crohns diseaseSpain17660.04656227709760.01243267842890.0120512282697842528.0133
Colorectal cancerAustria64350.06964860777950.02268037065630.043752573265125638.67167
Type II diabetesChina1831850.04616877708510.03579229911490.1335581698951088535.9728
Ulcerative colitisSpain78660.01084779868740.01243267842890.349343973391518150.0792
ObesityDenmark1691230.01006733938770.01612127320190.3643394621141587152.1884
Type II diabetesSweden53920.02429789421340.01935964840890.6246111320691950966.065
Rheumatoid arthritisChina127980.02950878775650.02517143860320.8598235777262651988.435
Click on arrows to sort table data. Shift+click to sort by multiple columns.

Citation:

Nayfach S, Fischbach MA, Pollard KS. MetaQuery: a web server for rapid annotation and quantitative analysis of specific genes in the human gut microbiome. Bioinformatics 2015;31(14). doi:10.1093/bioinformatics/btv382