MetaQuery: quantitative analysis of the human gut microbiome

Results

Estimated gene abundances and results from statistical analyses

Job details:

Submission date: 2021-01-24 09:51:01 PST
Job id & description: 2375, guanosine2
Query type: protein
Count queries & homologs: 100, 100
Min % identity & max e-value: 100%, 1e-5
Min % query & target coverage: 95%, 95%

Click here to download results

Table of contents:


Gut microbiome genes homologous to your query gene:

query_id target_id status kegg eggnog phylum genus query_cov target_cov percent_identity
MH0204_GL01224043121349CompleteK03783COG0005FirmicutesFaecalibacterium100.0100.0100.0
MH0188_GL00783893120877CompleteK03783COG0005Firmicutesunknown100.0100.0100.0
MH0157_GL01274613120515CompleteK03783COG0005unknownunknown100.0100.0100.0
MH0172_GL00128683120653CompleteK03783COG0005unknownunknown100.0100.0100.0
MH0230_GL00244133121716CompleteK03783COG0005unknownunknown100.0100.0100.0
MH0145_GL01637363120332CompleteK03783COG0005unknownunknown100.0100.0100.0
MH0308_GL00457443139343CompleteK03783COG0005unknownunknown100.0100.0100.0
V1.CD21-0_GL00419083144308CompleteK03783COG0005unknownunknown100.0100.0100.0
V1.CD46-0_GL00213683128337CompleteK03783COG0005FirmicutesBlautia100.0100.0100.0
V1.UC60-0_GL00624303130298CompleteK03783COG0005unknownunknown100.0100.0100.0
MH0100_GL00038043135987CompleteK03783COG0005unknownunknown100.0100.0100.0
MH0239_GL00659623154805Lack 5'-endK03783COG0005unknownunknown100.0100.0100.0
O2.CD3-0-PT_GL00880863142632CompleteK03783COG0005unknownunknown100.0100.0100.0
O2.UC20-1_GL01340093126691CompleteK03783COG0005unknownunknown100.0100.0100.0
V1.CD29-0_GL01038913128035CompleteK03783COG0005Firmicutesunknown100.0100.0100.0
V1.UC54-0_GL01825203130151CompleteK03783COG0005unknownunknown100.0100.0100.0
O2.UC11-1_GL01173243159177CompleteK03783COG0005unknownunknown100.0100.0100.0
V1.CD43-0_GL01078903128310CompleteK03783COG0005unknownunknown100.0100.0100.0
V1.CD6-4_GL00373023177960CompleteK03783COG0005unknownunknown100.0100.0100.0
158944319-stool1_revised3116604Lack 5'-endK03783COG0005BacteroidetesBacteroides100.0100.0100.0
NLF001_GL00004793147179CompleteK03783COG0005FirmicutesRoseburia100.0100.0100.0
V1.FI11_GL01470823128778CompleteK03783COG0005BacteroidetesBacteroides100.0100.0100.0
V1.FI17_GL00659183145345CompleteK03783COG0005unknownunknown100.0100.0100.0
MH0006_GL01872523167450CompleteK03783COG0005unknownunknown100.0100.0100.0
MH0212_GL00841343154423CompleteK03783COG0005Firmicutesunknown100.0100.0100.0
MH0230_GL01677173138170Lack 5'-endK03783COG0005unknownunknown100.0100.0100.0
MH0287_GL00753413155601CompleteK03783COG0005unknownunknown100.0100.0100.0
MH0444_GL01044313158671CompleteK03783COG0005FirmicutesBlautia100.0100.0100.0
MH0452_GL01597193142376CompleteK03783COG0005Firmicutesunknown100.0100.0100.0
O2.UC20-1_GL00219253159443CompleteK03783COG0005unknownunknown100.0100.0100.0
T2D-47A_GL00804363165146CompleteK03783COG0005Firmicutesunknown100.0100.0100.0
MH0088_GL00010953200890CompleteK03783COG0005unknownunknown100.0100.0100.0
MH0287_GL00406333139128CompleteK03783COG0005unknownunknown100.0100.0100.0
O2.CD3-0-PT_GL00379343191542CompleteK03783COG0005Firmicutesunknown100.0100.0100.0
T2D-9A_GL00263833149004Lack 5'-endK03783COG0005BacteroidetesBacteroides100.0100.0100.0
159551223-stool1_revised3198359Lack 5'-endK03783COG0005BacteroidetesAlistipes100.0100.0100.0
MH0009_GL00419613167490CompleteK03783COG0005unknownunknown100.0100.0100.0
T2D-63A_GL00692393181693CompleteK03783COG0005FirmicutesBlautia100.0100.0100.0
V1.UC39-0_GL01515153146240Lack 5'-endK03783COG0005BacteroidetesBacteroides100.0100.0100.0
1072459.CE10_27883199214CompleteK03815COG0005ProteobacteriaEscherichia100.0100.0100.0
457421.CBFG_046023199409CompleteK03783COG0005Firmicutesunknown100.0100.0100.0
763982056-stool2_revised3198863Lack 3'-endK03783COG0005unknownunknown100.0100.0100.0
MH0001_GL00019683167258CompleteK03783COG0005unknownunknown100.0100.0100.0
MH0003_GL00086733167303CompleteK03783COG0005unknownunknown100.0100.0100.0
MH0136_GL00939683185686CompleteK03783COG0005unknownunknown100.0100.0100.0
MH0205_GL00587753137811CompleteK03783COG0005FirmicutesCoprococcus100.0100.0100.0
O2.UC44-2_GL01607773192522CompleteK03783COG0005unknownunknown100.0100.0100.0
T2D-31A_GL01025943197374CompleteK03783COG0005Firmicutesunknown100.0100.0100.0
T2D-59A_GL00556543148776Lack 5'-endK03783COG0005BacteroidetesBacteroides100.0100.0100.0
160704339-stool1_revised3133424Lack 5'-endK03783COG0005unknownunknown100.0100.0100.0
556261.HMPREF0240_041103167124CompleteK03783COG0005FirmicutesClostridium100.0100.0100.0
MH0193_GL00041323170350CompleteK03783COG0005unknownunknown100.0100.0100.0
N032A_GL00307553180685Lack 5'-endK03783COG0005FirmicutesClostridium100.0100.0100.0
469613.HMPREF0864_003753183457CompleteK03815COG0005Proteobacteriaunknown100.0100.0100.0
MH0013_GL00236503151389CompleteK03783COG0005unknownunknown100.0100.0100.0
MH0014_GL00166993184122CompleteK03815COG0005ProteobacteriaEscherichia100.0100.0100.0
MH0025_GL00828093184248CompleteK03815COG0005ProteobacteriaEscherichia100.0100.0100.0
MH0061_GL00304743184633CompleteK03783COG0005unknownunknown100.0100.0100.0
MH0097_GL00493963185043CompleteK03815COG0005ProteobacteriaEscherichia100.0100.0100.0
MH0357_GL00788653189204CompleteK03783COG0005unknownunknown100.0100.0100.0
V1.CD12-3_GL00084483193070CompleteK03783COG0005FirmicutesClostridium100.0100.0100.0
V1.FI11_GL00906723161686Lack 5'-endK03783COG0005unknownunknown100.0100.0100.0
V1.FI24_GL01547313178532CompleteK03783COG0005FirmicutesRoseburia100.0100.0100.0
V1.UC38-0_GL01084833195060Lack 5'-endK03783COG0005Firmicutesunknown100.0100.0100.0
585054.EFER_07673199310CompleteK03815COG0005ProteobacteriaEscherichia100.0100.0100.0
MH0086_GL00439313200861CompleteK03783COG0005unknownunknown100.0100.0100.0
MH0311_GL00185483188477CompleteK03783COG0005unknownunknown100.0100.0100.0
MH0318_GL00658933188556CompleteK03783COG0005unknownunknown100.0100.0100.0
V1.CD54-0_GL00585153193735CompleteK03783COG0005FirmicutesAnaerostipes100.0100.0100.0
V1.FI14_GL00548383194113CompleteK03783COG0005unknownunknown100.0100.0100.0
V1.FI19_GL02034813161986CompleteK03783COG0005unknownunknown100.0100.0100.0
290338.CKO_003893199241CompleteK03815COG0005ProteobacteriaCitrobacter100.0100.0100.0
BGI-33A_GL00022563147583CompleteK03783COG1683;COG0005unknownunknown100.0100.0100.0
MH0053_GL00592953168118CompleteK03783COG0005unknownunknown100.0100.0100.0
MH0221_GL00067843187096CompleteK03783COG0005FirmicutesClostridium100.0100.0100.0
MH0277_GL00069613171872CompleteK03783COG0005unknownunknown100.0100.0100.0
MH0358_GL00820913189257CompleteK03783COG0005FirmicutesClostridium100.0100.0100.0
1006551.KOX_268003199196CompleteK03815COG0005ProteobacteriaKlebsiella100.0100.0100.0
159166850-stool1_revised3198231CompleteK03783COG0005unknownunknown100.0100.0100.0
469595.CSAG_022103199434CompleteK03815COG0005ProteobacteriaCitrobacter100.0100.0100.0
MH0358_GL00568073189248CompleteK03783COG0005unknownunknown100.0100.0100.0
MH0377_GL00350533189701CompleteK03783COG0005FirmicutesRoseburia100.0100.0100.0
DLM024_GL00053193195808CompleteK03783COG0005unknownunknown100.0100.0100.0
MH0012_GL00685813134807CompleteK03783COG0005unknownunknown100.0100.0100.0
MH0179_GL00534323186297CompleteK03815COG0005ProteobacteriaCitrobacter100.0100.0100.0
MH0247_GL00985843187479CompleteK03815COG0005ProteobacteriaKlebsiella100.0100.0100.0
MH0260_GL01484633187705CompleteK03815COG0005ProteobacteriaKlebsiella100.0100.0100.0
MH0323_GL01424163188654CompleteK03783COG0005unknownunknown100.0100.0100.0
V1.FI04_GL01449333145050CompleteK03783COG0005unknownunknown100.0100.0100.0
V1.FI05_GL01293373193987CompleteK03783COG0005ActinobacteriaEggerthella100.0100.0100.0
V1.FI17_GL01409133194273CompleteK03783COG0005unknownunknown100.0100.0100.0
V1.UC31-0_GL01203333179179CompleteK03783COG0005unknownunknown100.0100.0100.0
479437.Elen_18893199293CompleteK03783COG0005ActinobacteriaEggerthella100.0100.0100.0
764588959-stool1_revised3199054Lack 5'-endK03783COG0005BacteroidetesBacteroides100.0100.0100.0
MH0015_GL00141073167740CompleteK03783COG0005unknownunknown100.0100.0100.0
MH0016_GL00561743200173CompleteK03783COG0005BacteroidetesParabacteroides100.0100.0100.0
MH0020_GL00161013200194CompleteK03783COG0005BacteroidetesParabacteroides100.0100.0100.0
MH0006_GL00754013199835CompleteK03783COG0005unknownunknown100.0100.0100.0
MH0188_GL01131893153867CompleteK03783COG0005unknownunknown100.0100.0100.0
MH0003_GL00518493199762CompleteK03783COG0005unknownunknown100.0100.0100.0
Click on arrows to sort table data. Shift+click to sort by multiple columns.

The abundance of your query across gut microbiome samples:




The prevalence of your query across gut microbiome samples:




Taxonomic groups correlated with your query gene:

tax_level tax_name spearman_rho pvalue qvalue
familyBacteroidaceae0.4093.29e-767.76e-74
genusBacteroides0.4093.29e-767.76e-74
familyPrevotellaceae-0.3597.67e-581.21e-55
speciesBacteroides_ovatus0.3323.33e-493.93e-47
speciesRuminococcus_gnavus0.3176.03e-455.69e-43
speciesPrevotella_copri-0.33.61e-402.84e-38
genusPrevotella-0.2852.61e-361.76e-34
speciesClostridium_bolteae0.2637.44e-314.39e-29
speciesCoprobacillus_unclassified0.2521.61e-287.84e-27
speciesBacteroides_fragilis0.2521.66e-287.84e-27
phylumFirmicutes-0.2481.69e-277.25e-26
speciesClostridium_symbiosum0.2472.61e-271.03e-25
genusCoprobacillus0.2454.83e-271.75e-25
speciesClostridiales_bacterium_1_7_47FAA0.2413.3e-261.11e-24
genusButyrivibrio-0.2372.39e-257.52e-24
speciesClostridium_ramosum0.2315.66e-241.67e-22
speciesEubacterium_biforme-0.236.34e-241.76e-22
speciesBacteroides_stercoris0.2291.26e-233.3e-22
familyEubacteriaceae-0.2291.37e-233.4e-22
genusEubacterium-0.2281.55e-233.66e-22
speciesCoprococcus_catus-0.2281.65e-233.71e-22
speciesDorea_longicatena-0.2241.27e-222.72e-21
genusFlavonifractor0.2222.29e-224.5e-21
speciesFlavonifractor_plautii0.2222.29e-224.5e-21
speciesParaprevotella_xylaniphila-0.2222.53e-224.78e-21
familyRuminococcaceae-0.2172.05e-213.72e-20
genusParaprevotella-0.2172.83e-214.95e-20
speciesParaprevotella_unclassified-0.2147e-211.18e-19
speciesEubacterium_rectale-0.2131.1e-201.79e-19
speciesClostridium_clostridioforme0.2112.62e-204.08e-19
speciesAnaerostipes_unclassified0.2112.68e-204.08e-19
speciesEscherichia_coli0.214.01e-205.91e-19
genusDorea-0.215.41e-207.74e-19
genusEscherichia0.2088.31e-201.15e-18
speciesEggerthella_unclassified0.2089.39e-201.27e-18
speciesAlistipes_senegalensis-0.2062.53e-193.32e-18
speciesEubacterium_siraeum-0.2037.19e-199.17e-18
classClostridia-0.2037.97e-199.65e-18
orderClostridiales-0.2037.97e-199.65e-18
genusCoprococcus-0.2039.27e-191.09e-17
speciesMethanobrevibacter_smithii-0.2021.17e-181.35e-17
speciesLachnospiraceae_bacterium_9_1_43BFAA0.2021.25e-181.4e-17
speciesEubacterium_ramulus-0.2021.3e-181.43e-17
phylumProteobacteria0.22.2e-182.36e-17
genusEggerthella0.22.37e-182.49e-17
speciesClostridium_hathewayi0.22.48e-182.54e-17
speciesCoprococcus_comes-0.1994.34e-184.36e-17
speciesSubdoligranulum_unclassified-0.1985.32e-185.18e-17
speciesParaprevotella_clara-0.1985.38e-185.18e-17
genusPantoea0.1978.43e-187.8e-17
speciesPantoea_unclassified0.1978.43e-187.8e-17
speciesLachnospiraceae_bacterium_6_1_63FAA0.1961e-179.08e-17
orderEnterobacteriales0.1961.1e-179.36e-17
familyEnterobacteriaceae0.1961.1e-179.36e-17
classMethanobacteria-0.1961.13e-179.36e-17
orderMethanobacteriales-0.1961.13e-179.36e-17
familyMethanobacteriaceae-0.1961.13e-179.36e-17
speciesFusobacterium_ulcerans0.1951.83e-171.49e-16
speciesRuminococcus_obeum-0.1952.09e-171.67e-16
genusMethanobrevibacter-0.1933.46e-172.72e-16
speciesBacteroides_plebeius-0.1917.22e-175.59e-16
genusSubdoligranulum-0.1917.75e-175.81e-16
phylumEuryarchaeota-0.1917.76e-175.81e-16
classGammaproteobacteria0.1882.44e-161.8e-15
speciesAnaerotruncus_unclassified-0.1822.5e-151.82e-14
speciesEubacterium_eligens-0.184.28e-153.06e-14
speciesLachnospiraceae_bacterium_5_1_57FAA0.1795.97e-154.21e-14
genusCatenibacterium-0.1771.16e-147.94e-14
speciesCatenibacterium_mitsuokai-0.1771.16e-147.94e-14
speciesBacteroides_thetaiotaomicron0.1771.3e-148.77e-14
speciesDorea_formicigenerans-0.1761.53e-141.02e-13
genusClostridiales_noname0.1762.05e-141.34e-13
speciesClostridium_citroniae0.1743.99e-142.58e-13
genusFaecalibacterium-0.1727.77e-144.89e-13
speciesFaecalibacterium_prausnitzii-0.1727.77e-144.89e-13
genusClostridium0.1719.95e-146.18e-13
familyClostridiaceae0.1711.08e-136.62e-13
speciesRoseburia_hominis-0.1711.11e-136.72e-13
speciesClostridium_nexile0.1691.73e-131.03e-12
speciesButyrivibrio_crossotus-0.1691.98e-131.17e-12
speciesCollinsella_aerofaciens-0.1692.14e-131.25e-12
speciesMitsuokella_unclassified-0.1665.77e-133.32e-12
familyClostridiales_noname0.1631.17e-126.65e-12
speciesOlsenella_unclassified-0.1621.82e-121.02e-11
genusMitsuokella-0.1622.11e-121.17e-11
familyFusobacteriaceae0.1612.6e-121.43e-11
speciesBlautia_producta0.1585.48e-122.94e-11
phylumFusobacteria0.1585.6e-122.94e-11
classFusobacteriia0.1585.6e-122.94e-11
orderFusobacteriales0.1585.6e-122.94e-11
genusFusobacterium0.1578.71e-124.52e-11
genusPhascolarctobacterium-0.1561.11e-115.63e-11
speciesPhascolarctobacterium_succinatutens-0.1561.11e-115.63e-11
speciesRuminococcus_lactaris-0.1542.06e-111.03e-10
speciesLachnospiraceae_bacterium_1_4_56FAA0.1532.91e-111.45e-10
classBacteroidia0.1523.52e-111.7e-10
orderBacteroidales0.1523.52e-111.7e-10
phylumBacteroidetes0.1523.54e-111.7e-10
speciesEubacterium_hallii-0.1524.5e-112.15e-10
genusParabacteroides0.1516e-112.83e-10
speciesClostridium_sp_L2_50-0.1498.37e-113.91e-10
speciesBacteroides_coprocola-0.1498.57e-113.97e-10
speciesBacteroides_xylanisolvens0.1481.1e-105.04e-10
genusOlsenella-0.1462.55e-101.16e-09
genusCollinsella-0.1435.37e-102.41e-09
genusMethanosphaera-0.1426.54e-102.88e-09
speciesMethanosphaera_stadtmanae-0.1426.54e-102.88e-09
speciesLachnospiraceae_bacterium_8_1_57FAA-0.1381.82e-097.95e-09
speciesButyrivibrio_unclassified-0.1381.88e-098.14e-09
genusCoprobacter-0.1372.5e-091.06e-08
speciesCoprobacter_fastidiosus-0.1372.5e-091.06e-08
speciesLachnospiraceae_bacterium_2_1_58FAA0.1363.48e-091.47e-08
speciesPrevotella_stercorea-0.1363.55e-091.48e-08
familyBacteroidales_noname-0.1354.78e-091.94e-08
genusBacteroidales_noname-0.1354.78e-091.94e-08
speciesBacteroidales_bacterium_ph8-0.1354.78e-091.94e-08
speciesMethanobrevibacter_unclassified-0.1355.16e-092.08e-08
speciesBifidobacterium_adolescentis-0.1345.87e-092.35e-08
speciesFusobacterium_varium0.1336.83e-092.71e-08
speciesClostridium_asparagiforme0.1338.29e-093.26e-08
phylumVerrucomicrobia-0.131.82e-086.82e-08
classVerrucomicrobiae-0.131.82e-086.82e-08
orderVerrucomicrobiales-0.131.82e-086.82e-08
familyVerrucomicrobiaceae-0.131.82e-086.82e-08
genusAkkermansia-0.131.82e-086.82e-08
speciesAkkermansia_muciniphila-0.131.82e-086.82e-08
speciesRuminococcus_callidus-0.1282.9e-081.08e-07
speciesEubacterium_dolichum0.1273.22e-081.19e-07
familyPorphyromonadaceae0.1246.99e-082.56e-07
speciesSutterella_wadsworthensis-0.1248.36e-083.04e-07
speciesAnaerostipes_hadrus-0.1238.58e-083.09e-07
classNegativicutes-0.1221.08e-073.83e-07
orderSelenomonadales-0.1221.08e-073.83e-07
speciesAlistipes_indistinctus-0.1211.5e-075.28e-07
speciesDesulfovibrio_piger-0.1211.72e-076.01e-07
genusDesulfovibrio-0.121.8e-076.25e-07
genusPseudoflavonifractor-0.1192.25e-077.7e-07
speciesPseudoflavonifractor_capillosus-0.1192.25e-077.7e-07
speciesEubacterium_sp_3_1_310.1156.06e-072.06e-06
speciesAnaerotruncus_colihominis0.1148.44e-072.85e-06
genusSutterella-0.1121.21e-064.05e-06
speciesLactobacillus_ruminis-0.1121.32e-064.39e-06
speciesLachnospiraceae_bacterium_3_1_46FAA-0.1082.67e-068.81e-06
speciesEggerthella_lenta0.1082.87e-069.41e-06
familyOxalobacteraceae-0.1073.22e-061.05e-05
speciesAlistipes_shahii-0.1073.45e-061.12e-05
familyAcidaminococcaceae-0.1073.58e-061.15e-05
genusOxalobacter-0.1064.04e-061.28e-05
speciesOxalobacter_formigenes-0.1064.04e-061.28e-05
orderCoriobacteriales-0.1046.09e-061.9e-05
familyCoriobacteriaceae-0.1046.09e-061.9e-05
speciesEubacterium_ventriosum-0.1037.36e-062.29e-05
speciesRoseburia_inulinivorans-0.1037.95e-062.45e-05
speciesClostridium_sp_ATCC_BAA_4420.1038.63e-062.65e-05
genusAnaerotruncus-0.1029.34e-062.84e-05
speciesErysipelotrichaceae_bacterium_6_1_450.1011.11e-053.36e-05
speciesRuminococcus_champanellensis-0.1011.13e-053.4e-05
genusErysipelotrichaceae_noname-0.1011.24e-053.7e-05
speciesLachnospiraceae_bacterium_2_1_46FAA0.1011.27e-053.77e-05
speciesBacteroides_uniformis0.1011.28e-053.78e-05
genusOdoribacter-0.11.46e-054.28e-05
genusAdlercreutzia-0.0991.91e-055.53e-05
speciesAdlercreutzia_equolifaciens-0.0991.91e-055.53e-05
classErysipelotrichia-0.0963.34e-059.5e-05
orderErysipelotrichales-0.0963.34e-059.5e-05
familyErysipelotrichaceae-0.0963.34e-059.5e-05
speciesBacteroides_vulgatus0.0953.65e-050.000103
speciesEscherichia_unclassified0.0953.93e-050.00011
speciesDesulfovibrio_desulfuricans-0.0935.64e-050.000158
genusKlebsiella0.0926.2e-050.000172
speciesFusobacterium_nucleatum0.0927.01e-050.000193
speciesBacteroides_faecis-0.0918e-050.00022
speciesErysipelotrichaceae_bacterium_2_2_44A0.0918.22e-050.000224
speciesMegasphaera_micronuciformis0.0890.0001070.00029
genusRuminococcus-0.0890.0001130.000305
familyLachnospiraceae-0.0870.000160.000429
genusMorganella0.0870.0001620.00043
speciesMorganella_morganii0.0870.0001620.00043
speciesOdoribacter_splanchnicus-0.0860.0001880.000496
speciesCoprococcus_sp_ART55_1-0.0860.0001950.000511
genusSutterellaceae_unclassified-0.0860.0002040.000532
speciesBacteroides_coprophilus-0.0850.0002160.00056
speciesBacteroides_pectinophilus-0.0850.000220.000567
speciesEubacterium_cylindroides-0.0850.0002390.000613
speciesDialister_succinatiphilus-0.0830.0003120.000796
speciesKlebsiella_pneumoniae0.0810.0004450.00113
genusRuminococcaceae_noname-0.0790.0006160.00154
speciesRuminococcaceae_bacterium_D16-0.0790.0006160.00154
speciesPeptostreptococcaceae_noname_unclassified-0.0790.0006170.00154
genusClostridiaceae_noname0.0780.00070.00173
speciesClostridiaceae_bacterium_JC1180.0780.00070.00173
genusBarnesiella-0.0770.0008090.00198
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speciesBacteroides_sp_2_1_220.0540.01850.0354
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speciesEubacterium_limosum0.0540.02040.0385
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speciesCollinsella_unclassified0.0510.02870.0521
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genusAggregatibacter-0.0480.03740.0669
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speciesAggregatibacter_segnis-0.0430.0640.111
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speciesBacteroides_salanitronis-0.0420.06720.115
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speciesBacteroides_barnesiae-0.0420.0690.117
speciesClostridium_perfringens0.0420.0690.117
speciesProteus_mirabilis0.0420.07040.119
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genusVeillonella0.0420.07190.12
speciesSlackia_piriformis-0.0410.07450.124
genusPeptoniphilus0.0410.07990.132
speciesEnterococcus_faecium0.040.08170.135
genusMegasphaera0.040.08690.143
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speciesSubdoligranulum_sp_4_3_54A2FAA0.0390.09150.149
speciesAlistipes_sp_HGB5-0.0390.09180.149
speciesLactococcus_phage_936_sensu_lato-0.0390.09590.156
speciesParabacteroides_johnsonii-0.0380.10.162
speciesRoseburia_intestinalis-0.0380.1010.163
speciesTuricibacter_sanguinis-0.0380.1030.165
speciesHoldemania_filiformis-0.0370.1050.168
speciesFusobacterium_mortiferum0.0370.1070.171
genusSolobacterium0.0370.1080.171
speciesSolobacterium_moorei0.0370.1080.171
speciesParabacteroides_sp_D13-0.0370.1090.172
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speciesSutterella_parvirubra0.0360.1160.182
speciesTuricibacter_unclassified-0.0360.1190.186
speciesPeptostreptococcus_anaerobius0.0360.1230.192
speciesClostridium_sp_KLE_17550.0350.1340.208
speciesBifidobacterium_animalis-0.0340.1370.212
speciesStreptococcus_anginosus0.0340.1410.217
speciesBacteroides_sp_1_1_60.0340.1430.22
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speciesStreptococcus_thermophilus-0.0340.1470.225
speciesLactococcus_phage_phi7-0.0330.150.228
speciesPrevotella_buccae0.0320.1660.252
genusStaphylococcus-0.0320.1710.257
speciesBlautia_hydrogenotrophica0.0320.1710.257
speciesBacteroides_massiliensis-0.0320.1710.257
speciesStreptococcus_lutetiensis0.0310.1790.268
speciesBifidobacterium_catenulatum-0.0310.1820.272
familyLeuconostocaceae0.030.1930.287
familyStreptococcaceae-0.030.1970.292
speciesCoprobacillus_sp_D60.0290.2070.306
familyBacillales_noname0.0290.2110.309
genusGemella0.0290.2110.309
speciesStreptococcus_parasanguinis-0.0290.2110.309
speciesPeptostreptococcus_stomatis0.0290.2130.311
speciesOdoribacter_laneus-0.0290.2150.313
genusStreptococcus-0.0290.2170.315
speciesVeillonella_atypica0.0280.2180.316
speciesParabacteroides_distasonis-0.0280.220.318
genusAnaerostipes-0.0280.2260.325
speciesLachnospiraceae_bacterium_7_1_58FAA-0.0280.2290.329
speciesBacteroides_nordii0.0280.230.329
genusCitrobacter0.0280.2320.331
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genusMyoviridae_noname0.0270.2370.336
speciesLactobacillus_fermentum0.0270.2440.345
familyStaphylococcaceae-0.0270.2490.35
genusWeissella0.0270.2490.35
speciesCoriobacteriaceae_bacterium_phI0.0260.2520.353
genusCoriobacteriaceae_noname0.0260.2610.363
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speciesOscillibacter_sp_KLE_17450.0260.2660.367
speciesClostridium_leptum-0.0250.270.372
speciesStreptococcus_australis0.0250.2750.377
genusHoldemania0.0250.2760.378
speciesBacteroides_salyersiae-0.0250.2790.381
genusButyricicoccus0.0250.2860.388
speciesButyricicoccus_pullicaecorum0.0250.2860.388
speciesPropionibacterium_freudenreichii-0.0240.2910.394
speciesBacteroides_cellulosilyticus-0.0240.2970.401
speciesStreptococcus_pasteurianus0.0240.2990.402
speciesPorphyromonas_asaccharolytica0.0240.3080.413
speciesLactobacillus_mucosae-0.0240.3090.413
speciesWeissella_confusa0.0230.3220.429
genusSiphoviridae_noname-0.0230.3240.431
speciesLactobacillus_reuteri-0.0230.3250.431
genusAcidaminococcaceae_unclassified-0.0230.330.436
speciesRuminococcus_torques-0.0230.3310.436
speciesBacteroides_dorei0.0220.3320.437
genusParasutterella0.0220.3350.437
speciesStreptococcus_mutans0.0220.3350.437
speciesParasutterella_excrementihominis0.0220.3350.437
familyRikenellaceae-0.0220.3380.438
genusAlistipes-0.0220.3380.438
genusParvimonas0.0220.3420.442
speciesParvimonas_unclassified0.0220.3430.442
familySiphoviridae-0.0220.3460.445
genusAcidaminococcus0.0220.3520.45
speciesAlistipes_onderdonkii-0.0220.3520.45
speciesStreptococcus_vestibularis-0.0210.3540.452
familyCampylobacteraceae0.0210.3580.455
genusSuccinatimonas-0.0210.3640.461
speciesSuccinatimonas_hippei-0.0210.3640.461
genusDialister0.0210.3670.463
speciesPorphyromonas_uenonis0.0210.3680.463
speciesCitrobacter_unclassified0.0210.3710.466
genusCampylobacter0.020.3760.471
orderPseudomonadales-0.020.3770.471
speciesBifidobacterium_bifidum-0.020.3780.471
familySuccinivibrionaceae-0.020.3840.477
speciesEnterobacter_cloacae0.020.3910.483
classDeltaproteobacteria0.020.3930.483
orderDesulfovibrionales0.020.3930.483
familyDesulfovibrionaceae0.020.3930.483
genusLactococcus-0.020.3980.488
speciesKlebsiella_phage_KP36-0.0190.4120.502
speciesVeillonella_unclassified0.0190.4120.502
speciesBacteroides_oleiciplenus0.0190.4130.502
genusGordonibacter-0.0190.4180.505
speciesLactococcus_garvieae0.0190.4180.505
speciesGordonibacter_pamelaeae-0.0190.4180.505
genusActinobacillus-0.0190.4210.506
speciesActinobacillus_unclassified-0.0190.4210.506
speciesLactococcus_phage_bIL670.0190.4230.507
speciesLactobacillus_amylovorus0.0180.4320.516
speciesBifidobacterium_angulatum-0.0180.4410.526
speciesAlistipes_sp_AP110.0170.4590.546
speciesBacteroides_eggerthii-0.0160.490.581
speciesCampylobacter_concisus-0.0160.4940.584
speciesRothia_mucilaginosa-0.0150.5140.603
speciesAcidaminococcus_intestini0.0150.5140.603
speciesStreptococcus_infantarius0.0150.5150.603
speciesBifidobacterium_longum-0.0150.5150.603
familyMicrococcaceae-0.0150.5180.605
speciesLactococcus_lactis-0.0150.5190.605
genusSlackia-0.0150.5230.608
speciesAcidaminococcus_fermentans-0.0150.5250.609
genusRothia-0.0140.5320.615
speciesAlistipes_unclassified-0.0140.5450.629
speciesRoseburia_unclassified-0.0140.5480.631
speciesAcidaminococcus_unclassified0.0140.5530.635
speciesWeissella_cibaria0.0140.5560.637
familyViruses_noname0.0130.5790.66
genusViruses_noname0.0130.5790.66
genusLeuconostoc0.0130.580.66
speciesLachnospiraceae_bacterium_3_1_57FAA_CT10.0120.5920.67
classEpsilonproteobacteria0.0120.5950.67
orderCampylobacterales0.0120.5950.67
speciesLactobacillus_gasseri-0.0120.5950.67
speciesBacteroides_clarus0.0120.5970.671
speciesEggerthella_sp_1_3_56FAA0.0120.5990.672
speciesHaemophilus_sputorum-0.0120.6140.687
speciesErysipelotrichaceae_bacterium_21_30.0110.6240.696
genusTunalikevirus-0.0110.6260.697
genusPeptostreptococcaceae_noname-0.0110.6280.697
speciesLactobacillus_vaginalis0.0110.6320.7
genusEnterobacter0.0110.6340.701
speciesBacteroides_fluxus-0.0110.6440.71
speciesCollinsella_tanakaei0.010.6620.728
genusPropionibacterium0.010.6640.729
speciesLeuconostoc_lactis0.010.670.734
speciesStreptococcus_gordonii-0.010.6750.738
familyPropionibacteriaceae0.010.6810.742
speciesBifidobacterium_dentium-0.0090.6860.746
speciesBacteroides_sp_4_3_47FAA0.0090.690.749
speciesC2likevirus_unclassified-0.0080.7150.774
familyPodoviridae-0.0080.7330.791
speciesRuminococcus_sp_JC3040.0080.7340.791
speciesCitrobacter_freundii0.0070.7540.81
familyPeptostreptococcaceae-0.0070.7550.81
speciesLachnospiraceae_bacterium_1_1_57FAA-0.0070.7660.82
speciesLactobacillus_acidophilus0.0060.7940.848
orderBacillales0.0060.7990.851
speciesStreptococcus_sanguinis-0.0060.8010.852
speciesBifidobacterium_breve-0.0060.810.858
speciesClostridium_bartlettii0.0060.8110.858
orderAeromonadales0.0050.8130.858
speciesCoprobacillus_sp_29_10.0050.820.864
genusC2likevirus-0.0050.8320.875
speciesStreptococcus_phage_Sfi210.0050.8350.876
speciesLactobacillus_delbrueckii-0.0040.8540.894
speciesBacteroides_caccae-0.0040.8570.895
speciesLactobacillus_sanfranciscensis-0.0040.8740.908
genusLachnospiraceae_noname-0.0040.8750.908
speciesLactobacillus_oris-0.0040.8750.908
speciesHaemophilus_paraphrohaemolyticus-0.0040.8780.909
familyActinomycetaceae0.0030.8860.915
genusPorphyromonas0.0030.890.916
genusLambdalikevirus0.0030.8930.916
speciesHoldemania_unclassified0.0030.8930.916
orderCaudovirales-0.0030.8960.917
speciesParabacteroides_sp_20_3-0.0030.9030.923
orderActinomycetales0.0030.9130.93
speciesMegasphaera_unclassified0.0020.9140.93
speciesBacteroides_intestinalis0.0020.9210.935
speciesParabacteroides_merdae0.0020.9290.941
speciesEnterobacter_aerogenes0.0020.9340.944
genusActinomyces0.0020.9430.951
speciesBacteroides_sp_3_1_190.0010.950.956
speciesLactobacillus_crispatus-0.0010.9650.969
speciesLactococcus_phage_jm20.00.9840.985
speciesLactobacillus_rhamnosus0.00.9850.985
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Association of query gene abundance with clinical phenotypes:

Boxplots:


Statistics:

pheno country case_n ctrl_n case_mean ctrl_mean pvalue rank percentile
Crohns diseaseSpain17660.1258921900850.0754601914143.54175192672e-0513024.32918
Type II diabetesChina1831850.1392308745510.1051905220550.0102112275048373412.3401
ObesityDenmark1691230.07878295969040.0738498637410.0455396997803478915.7476
Rheumatoid arthritisChina127980.102812970120.09077504808940.117676038842599619.9953
Liver cirrhosisChina1201140.1135213614860.09666512957930.3806131593012282376.667
Colorectal cancerAustria64350.1131430174470.08388576368510.4400072729621594153.9349
Ulcerative colitisSpain78660.07679654813920.0754601914140.4434044592281778758.6759
Type II diabetesDenmark752770.0758406420520.0742831494570.5448175191352146970.374
Type II diabetesSweden53920.08375792686920.08648396185880.8757315786612627288.9672
Click on arrows to sort table data. Shift+click to sort by multiple columns.

Citation:

Nayfach S, Fischbach MA, Pollard KS. MetaQuery: a web server for rapid annotation and quantitative analysis of specific genes in the human gut microbiome. Bioinformatics 2015;31(14). doi:10.1093/bioinformatics/btv382