MetaQuery: quantitative analysis of the human gut microbiome

Results

Estimated gene abundances and results from statistical analyses

Job details:

Submission date: 2021-01-24 09:51:33 PST
Job id & description: 2376, guanosine3
Query type: protein
Count queries & homologs: 100, 100
Min % identity & max e-value: 100%, 1e-5
Min % query & target coverage: 95%, 95%

Click here to download results

Table of contents:


Gut microbiome genes homologous to your query gene:

query_id target_id status kegg eggnog phylum genus query_cov target_cov percent_identity
MH0253_GL01091503203631CompleteK03783COG0005unknownunknown100.0100.0100.0
158944319-stool1_revised3230258CompleteK03783COG0005unknownunknown100.0100.0100.0
MH0272_GL01303673203930CompleteK03783COG0005unknownunknown100.0100.0100.0
MH0370_GL01367783205524CompleteK03783COG0005unknownunknown100.0100.0100.0
556261.HMPREF0240_035673215444CompleteK03783COG0005FirmicutesClostridium100.0100.0100.0
MH0060_GL00387493216482CompleteK03783COG0005FirmicutesFaecalibacterium100.0100.0100.0
MH0243_GL00634213203429Lack 5'-endK03783COG0005BacteroidetesAlistipes100.0100.0100.0
MH0359_GL01740233205274Lack 5'-endK03783COG0005BacteroidetesAlistipes100.0100.0100.0
O2.CD2-0-PT_GL00478803207549CompleteK03783COG0005Firmicutesunknown100.0100.0100.0
V1.CD21-0_GL00715513225315CompleteK03783COG0005unknownunknown100.0100.0100.0
V1.CD7-4_GL00493753209903CompleteK03783COG0005Firmicutesunknown100.0100.0100.0
575611.HMPREF0649_003413231512CompleteK03783COG0005BacteroidetesPrevotella100.0100.0100.0
MH0092_GL00376713200961CompleteK03783COG0005unknownunknown100.0100.0100.0
MH0131_GL01139143217585CompleteK03783COG0005Firmicutesunknown100.0100.0100.0
MH0006_GL01055813231772CompleteK03783COG0005unknownunknown100.0100.0100.0
MH0239_GL00373553203380CompleteK03783COG0005unknownunknown100.0100.0100.0
MH0385_GL01254143237943CompleteK03783COG0005unknownunknown100.0100.0100.0
MH0447_GL01711983207209CompleteK03783COG0005unknownunknown100.0100.0100.0
NLM023_GL00990553244076CompleteK03783COG0005FirmicutesFaecalibacterium100.0100.0100.0
V1.CD46-0_GL00985283225727CompleteK03783COG0005Firmicutesunknown100.0100.0100.0
V1.CD55-0_GL00860333209795CompleteK03783COG0005unknownunknown100.0100.0100.0
MH0274_GL01171913203969CompleteK03783COG0005BacteroidetesParabacteroides100.0100.0100.0
553973.CLOHYLEM_042783215441CompleteK03783COG0005FirmicutesClostridium100.0100.0100.0
MH0020_GL00645143216062CompleteK03783COG0005BacteroidetesBacteroides100.0100.0100.0
MH0137_GL00894503201706CompleteK03783COG0005unknownunknown100.0100.0100.0
MH0169_GL00470263202223CompleteK03783COG0005unknownunknown100.0100.0100.0
O2.UC11-1_GL00986053223753CompleteK03783COG0005unknownunknown100.0100.0100.0
O2.UC40-1_GL01273193208423CompleteK03783COG0005unknownunknown100.0100.0100.0
T2D-19A_GL00843113213338CompleteK03783COG0005unknownunknown100.0100.0100.0
V1.UC55-0_GL02461843227591CompleteK03783COG0005unknownunknown100.0100.0100.0
411467.BACCAP_027403247398CompleteK03783COG0005FirmicutesPseudoflavonifractor100.0100.0100.0
MH0357_GL00741153221294CompleteK03783COG0005unknownunknown100.0100.0100.0
MH0406_GL02189493222408CompleteK03783COG0005unknownunknown100.0100.0100.0
V1.CD3-3-PN_GL00420413225535CompleteK03783COG0005unknownunknown100.0100.0100.0
160765029-stool1_revised3230648CompleteK03783COG0005unknownunknown100.0100.0100.0
457396.CSBG_014653231381CompleteK03783COG0005FirmicutesClostridium100.0100.0100.0
562983.HMPREF0433_006103247565CompleteK03783COG0005FirmicutesGemella100.0100.0100.0
MH0229_GL00007003219214CompleteK03783COG0005unknownunknown100.0100.0100.0
V1.UC38-4_GL00579303243092CompleteK03783COG0005Firmicutesunknown100.0100.0100.0
706433.HMPREF9430_008723247608CompleteK03783COG0005FirmicutesSolobacterium100.0100.0100.0
MH0309_GL00612443236451CompleteK03783COG0005Bacteroidetesunknown100.0100.0100.0
MH0433_GL00693873238939CompleteK03783COG0005FirmicutesPseudoflavonifractor100.0100.0100.0
O2.UC35-0_GL00465223208301CompleteK03783COG0005unknownunknown100.0100.0100.0
O2.UC36-0_GL01605833240353CompleteK03783COG0005unknownunknown100.0100.0100.0
O2.UC44-2_GL00573173208556Lack 5'-endK03783COG0005BacteroidetesBacteroides100.0100.0100.0
T2D-91A_GL00767883245739CompleteK03783COG0005Firmicutesunknown100.0100.0100.0
V1.CD25-4_GL01060233225365CompleteK03783COG0005unknownunknown100.0100.0100.0
445972.ANACOL_009173231374CompleteK03783COG0005FirmicutesAnaerotruncus100.0100.0100.0
MH0372_GL00874603221670CompleteK03783COG0005unknownunknown100.0100.0100.0
O2.UC47-2_GL00248773240604CompleteK03783COG0005unknownunknown100.0100.0100.0
MH0012_GL01908873232000CompleteK03783COG0005unknownunknown100.0100.0100.0
MH0020_GL00099033232085CompleteK03783COG0005unknownunknown100.0100.0100.0
MH0358_GL01211953237302CompleteK03783COG0005Firmicutesunknown100.0100.0100.0
T2D-112A_GL00672363245013CompleteK03783COG0005Bacteroidetesunknown100.0100.0100.0
MH0012_GL01599313231982CompleteK03783COG0005BacteroidetesOdoribacter100.0100.0100.0
MH0047_GL00400853232356CompleteK03783;K03815COG0005unknownunknown100.0100.0100.0
MH0239_GL01187333235407CompleteK03783COG0005unknownunknown100.0100.0100.0
MH0314_GL00062063236497CompleteK03783COG0005unknownunknown100.0100.0100.0
MH0333_GL00337013236795CompleteK03783COG0005Firmicutesunknown100.0100.0100.0
MH0382_GL01002383237864CompleteK03783COG0005unknownunknown100.0100.0100.0
MH0432_GL01609643238910CompleteK03783COG0005unknownunknown100.0100.0100.0
V1.FI10_GL00246963242046CompleteK03783COG0005unknownunknown100.0100.0100.0
V1.UC17-2_GL01030173242815CompleteK03783COG0005unknownunknown100.0100.0100.0
160400887-stool1_revised3246573Lack 5'-endK03783COG0005BacteroidetesBacteroides100.0100.0100.0
ED16A_GL00598493245781CompleteK03783COG0005unknownunknown100.0100.0100.0
MH0011_GL00546573231897CompleteK03783COG0005unknownunknown100.0100.0100.0
MH0362_GL00991863237371CompleteK03783COG0005unknownunknown100.0100.0100.0
MH0373_GL00479103237643CompleteK03783COG0005unknownunknown100.0100.0100.0
MH0384_GL01195043205870CompleteK03783COG0005unknownunknown100.0100.0100.0
N089A_GL00365833244720CompleteK03783COG0005unknownunknown100.0100.0100.0
O2.UC32-1_GL00287983240284CompleteK03783COG0005unknownunknown100.0100.0100.0
T2D-51A_GL00132623245472CompleteK03783COG0005BacteroidetesParabacteroides100.0100.0100.0
T2D-77A_GL00477763245684CompleteK03815COG0005ProteobacteriaEnterobacter100.0100.0100.0
V1.FI20_GL00674733242323CompleteK03783COG0005Firmicutesunknown100.0100.0100.0
768724.HMPREF9131_02973231577CompleteK03783COG0005FirmicutesPeptoniphilus100.0100.0100.0
MH0150_GL00432653233956CompleteK03783COG0005unknownunknown100.0100.0100.0
MH0203_GL02199763202896CompleteK03783COG0005unknownunknown100.0100.0100.0
MH0298_GL01739783236321CompleteK03783COG0005unknownunknown100.0100.0100.0
O2.UC24-1_GL00601483224134CompleteK03783COG0005unknownunknown100.0100.0100.0
O2.UC48-0_GL01268813224723CompleteK03783COG0005unknownunknown100.0100.0100.0
V1.CD43-0_GL00778783209640CompleteK03783COG0005unknownunknown100.0100.0100.0
MH0006_GL01190943215733CompleteK03783COG0005unknownunknown100.0100.0100.0
MH0175_GL00633713218252CompleteK03783COG0005unknownunknown100.0100.0100.0
MH0009_GL00578923215820CompleteK03783COG0005unknownunknown100.0100.0100.0
MH0131_GL00172873201603CompleteK03783COG0005ProteobacteriaDesulfovibrio100.0100.0100.0
MH0192_GL00796073234606CompleteK03783COG0005unknownunknown100.0100.0100.0
V1.FI20_GL00692103210409CompleteK03783COG0005unknownunknown100.0100.0100.0
MH0224_GL01589413235166CompleteK03783COG0005unknownunknown100.0100.0100.0
MH0376_GL01156203237749CompleteK03783COG0005unknownunknown100.0100.0100.0
V1.UC17-2_GL00446343226920CompleteK03783COG0005unknownunknown100.0100.0100.0
158479027-stool1_revised3246083CompleteK03783COG0005unknownunknown100.0100.0100.0
158499257-stool1_revised3246144CompleteK03783COG0005unknownunknown100.0100.0100.0
160400887-stool1_revised3246568CompleteK03783COG0005unknownunknown100.0100.0100.0
MH0011_GL00400913215852CompleteK03783COG0005unknownunknown100.0100.0100.0
MH0071_GL00001233216611CompleteK03783COG0005unknownunknown100.0100.0100.0
V1.UC50-1_GL01702123243330CompleteK03783COG0005unknownunknown100.0100.0100.0
158458797-stool1_revised3246062CompleteK03783COG0005unknownunknown100.0100.0100.0
MH0009_GL00528073215816CompleteK03783COG0005unknownunknown100.0100.0100.0
MH0012_GL00911563215935CompleteK03783COG0005unknownunknown100.0100.0100.0
MH0189_GL01321553218568CompleteK03783COG0005unknownunknown100.0100.0100.0
Click on arrows to sort table data. Shift+click to sort by multiple columns.

The abundance of your query across gut microbiome samples:




The prevalence of your query across gut microbiome samples:




Taxonomic groups correlated with your query gene:

tax_level tax_name spearman_rho pvalue qvalue
familyPorphyromonadaceae0.5311.93e-1369.11e-134
genusParabacteroides0.4973.76e-1178.87e-115
familyOscillospiraceae0.4566.55e-977.73e-95
genusOscillibacter0.4566.55e-977.73e-95
familyRikenellaceae0.4422.44e-901.92e-88
genusAlistipes0.4422.44e-901.92e-88
speciesOscillibacter_unclassified0.4416.61e-904.46e-88
speciesAlistipes_onderdonkii0.3955.79e-713.42e-69
genusOdoribacter0.3854.81e-672.52e-65
speciesOdoribacter_splanchnicus0.3825.81e-662.74e-64
speciesLachnospiraceae_bacterium_7_1_58FAA0.3654.9e-602.1e-58
familyBacteroidaceae0.3361.05e-503.81e-49
genusBacteroides0.3361.05e-503.81e-49
genusAnaerotruncus0.3069.21e-423.11e-40
phylumBacteroidetes0.2957.32e-392.05e-37
classBacteroidia0.2957.4e-392.05e-37
orderBacteroidales0.2957.4e-392.05e-37
speciesBacteroides_caccae0.2941.08e-382.83e-37
classBacilli-0.2885.98e-371.49e-35
speciesBacteroides_uniformis0.2852.37e-365.59e-35
orderLactobacillales-0.2846.44e-361.45e-34
familyClostridiales_noname0.2813.53e-357.57e-34
classDeltaproteobacteria0.2791.09e-342.06e-33
orderDesulfovibrionales0.2791.09e-342.06e-33
familyDesulfovibrionaceae0.2791.09e-342.06e-33
speciesStreptococcus_salivarius-0.2732.09e-333.79e-32
speciesClostridium_asparagiforme0.2724.97e-338.69e-32
familyStreptococcaceae-0.2588.6e-301.45e-28
genusStreptococcus-0.2571.24e-292.02e-28
speciesAlistipes_finegoldii0.2562.15e-293.38e-28
speciesAnaerotruncus_colihominis0.2538.85e-291.35e-27
speciesAlistipes_shahii0.2498.43e-281.24e-26
speciesParabacteroides_distasonis0.2499.91e-281.42e-26
genusBilophila0.2463.78e-275.25e-26
speciesAlistipes_putredinis0.2463.93e-275.3e-26
speciesBilophila_unclassified0.2455.6e-277.34e-26
speciesStreptococcus_sanguinis-0.238.95e-241.14e-22
speciesParabacteroides_unclassified0.2231.42e-221.76e-21
speciesAnaerotruncus_unclassified0.2223.14e-223.8e-21
genusClostridiales_noname0.225.42e-226.4e-21
speciesClostridium_citroniae0.226.57e-227.56e-21
genusHoldemania0.2198.73e-229.81e-21
familyBacillales_noname-0.2199.61e-221.03e-20
genusGemella-0.2199.61e-221.03e-20
genusPeptostreptococcaceae_noname-0.2191.04e-211.09e-20
orderBacillales-0.2181.27e-211.3e-20
speciesBacteroides_cellulosilyticus0.2181.36e-211.37e-20
speciesBacteroides_ovatus0.2172.16e-212.12e-20
speciesBilophila_wadsworthia0.2172.7e-212.6e-20
familyPeptostreptococcaceae-0.2163.93e-213.71e-20
genusPseudoflavonifractor0.2131.37e-201.24e-19
speciesPseudoflavonifractor_capillosus0.2131.37e-201.24e-19
genusFlavonifractor0.2097.31e-206.39e-19
speciesFlavonifractor_plautii0.2097.31e-206.39e-19
familyBacteroidales_noname0.2081.06e-198.78e-19
genusBacteroidales_noname0.2081.06e-198.78e-19
speciesBacteroidales_bacterium_ph80.2081.06e-198.78e-19
genusLactobacillus-0.2081.08e-198.79e-19
familyLactobacillaceae-0.2081.19e-199.52e-19
phylumFirmicutes-0.2053.5e-192.75e-18
genusRuminococcaceae_noname0.2044.31e-193.28e-18
speciesRuminococcaceae_bacterium_D160.2044.31e-193.28e-18
speciesClostridiales_bacterium_1_7_47FAA0.2045.33e-193.99e-18
speciesAlistipes_senegalensis0.22.41e-181.78e-17
familyActinomycetaceae-0.1993.26e-182.37e-17
genusActinomyces-0.1993.93e-182.81e-17
genusSubdoligranulum0.1985.42e-183.82e-17
genusBifidobacterium-0.1979.16e-186.36e-17
orderBifidobacteriales-0.1961.03e-176.95e-17
familyBifidobacteriaceae-0.1961.03e-176.95e-17
speciesStreptococcus_mitis_oralis_pneumoniae-0.1951.82e-171.21e-16
phylumActinobacteria-0.1925.3e-173.43e-16
classActinobacteria-0.1925.3e-173.43e-16
genusClostridiaceae_noname0.1917.46e-174.69e-16
speciesClostridiaceae_bacterium_JC1180.1917.46e-174.69e-16
orderBurkholderiales0.1918.79e-175.46e-16
orderActinomycetales-0.199.85e-176.04e-16
speciesParabacteroides_merdae0.191.13e-166.84e-16
genusButyricimonas0.191.32e-167.79e-16
speciesButyricimonas_synergistica0.191.32e-167.79e-16
speciesSubdoligranulum_unclassified0.1891.52e-168.86e-16
speciesDesulfovibrio_desulfuricans0.1891.63e-169.38e-16
classBetaproteobacteria0.1873.24e-161.84e-15
speciesOscillibacter_sp_KLE_17450.1858.54e-164.8e-15
genusDesulfovibrio0.1849.89e-165.49e-15
speciesAlistipes_indistinctus0.1831.36e-157.46e-15
genusDorea-0.1821.89e-151.03e-14
speciesBacteroides_thetaiotaomicron0.1822.12e-151.14e-14
speciesStreptococcus_parasanguinis-0.1822.45e-151.3e-14
speciesHoldemania_filiformis0.1787.96e-154.17e-14
speciesClostridium_hathewayi0.1789.9e-155.13e-14
familySutterellaceae0.1761.56e-148e-14
speciesLachnospiraceae_bacterium_3_1_57FAA_CT10.1752.72e-141.38e-13
speciesRothia_mucilaginosa-0.1743.64e-141.83e-13
speciesAlistipes_sp_AP110.1727.05e-143.5e-13
speciesLachnospiraceae_bacterium_3_1_46FAA0.1718.72e-144.29e-13
genusKlebsiella-0.1719.59e-144.67e-13
genusVeillonella-0.171.35e-136.5e-13
familyMicrococcaceae-0.171.56e-137.44e-13
genusRothia-0.1691.79e-138.45e-13
speciesBifidobacterium_dentium-0.1682.59e-131.21e-12
familyLeuconostocaceae-0.1682.81e-131.3e-12
speciesStreptococcus_australis-0.1673.13e-131.43e-12
speciesStreptococcus_vestibularis-0.1673.49e-131.58e-12
speciesClostridium_leptum0.1664.41e-131.98e-12
speciesDorea_formicigenerans-0.1664.71e-132.1e-12
speciesClostridium_symbiosum0.1665.18e-132.29e-12
speciesDorea_longicatena-0.1656.28e-132.73e-12
classGammaproteobacteria-0.1656.3e-132.73e-12
speciesLachnospiraceae_bacterium_5_1_63FAA-0.1631.28e-125.49e-12
speciesStreptococcus_gordonii-0.1612.14e-129.1e-12
speciesStreptococcus_anginosus-0.1612.37e-129.99e-12
genusBarnesiella0.1612.43e-121.01e-11
speciesBarnesiella_intestinihominis0.1612.43e-121.01e-11
speciesVeillonella_parvula-0.162.95e-121.21e-11
familyLachnospiraceae-0.163.73e-121.52e-11
speciesClostridium_clostridioforme0.1585.56e-122.24e-11
speciesPrevotella_copri-0.1578.77e-123.51e-11
speciesClostridium_bolteae0.1579.22e-123.66e-11
genusSolobacterium-0.1561.1e-114.29e-11
speciesSolobacterium_moorei-0.1561.1e-114.29e-11
speciesKlebsiella_pneumoniae-0.1541.89e-117.31e-11
familyOxalobacteraceae0.1542.05e-117.87e-11
speciesVeillonella_unclassified-0.1542.11e-118.03e-11
genusParasutterella0.1523.49e-111.31e-10
speciesParasutterella_excrementihominis0.1523.49e-111.31e-10
genusOxalobacter0.1524.09e-111.51e-10
speciesOxalobacter_formigenes0.1524.09e-111.51e-10
speciesBacteroides_dorei0.1514.87e-111.78e-10
speciesRuminococcus_obeum-0.157.17e-112.6e-10
speciesBifidobacterium_longum-0.1499.02e-113.25e-10
speciesBacteroides_nordii0.1491.03e-103.68e-10
orderEnterobacteriales-0.1471.66e-105.83e-10
familyEnterobacteriaceae-0.1471.66e-105.83e-10
genusCoprobacter0.1471.68e-105.83e-10
speciesCoprobacter_fastidiosus0.1471.68e-105.83e-10
genusAcidaminococcaceae_unclassified0.1462.52e-108.68e-10
speciesClostridium_bartlettii-0.1462.58e-108.82e-10
familyVeillonellaceae-0.1453.08e-101.05e-09
speciesSubdoligranulum_sp_4_3_54A2FAA0.1426.13e-102.07e-09
speciesStreptococcus_mutans-0.1418.55e-102.86e-09
speciesBacteroides_vulgatus0.1419.37e-103.11e-09
genusWeissella-0.1391.45e-094.79e-09
genusMegamonas-0.1391.54e-095.05e-09
speciesMegamonas_unclassified-0.1391.56e-095.08e-09
speciesBacteroides_xylanisolvens0.1391.75e-095.66e-09
genusPrevotella-0.1329.34e-093e-08
speciesLactobacillus_gasseri-0.1311.24e-083.95e-08
speciesWeissella_cibaria-0.131.58e-085.01e-08
genusLeuconostoc-0.1292.17e-086.83e-08
speciesAnaerostipes_hadrus-0.1292.28e-087.13e-08
speciesClostridium_perfringens-0.1282.52e-087.83e-08
speciesOscillibacter_sp_KLE_17280.1273.48e-081.07e-07
genusBlautia-0.1264.61e-081.41e-07
speciesEubacterium_siraeum0.1255.2e-081.58e-07
speciesMegamonas_hypermegale-0.1256.41e-081.94e-07
speciesHaemophilus_parainfluenzae-0.1246.96e-082.09e-07
speciesCoprococcus_comes-0.1248.16e-082.44e-07
speciesGemella_morbillorum-0.1239.38e-082.78e-07
speciesPeptostreptococcaceae_noname_unclassified-0.1221.09e-073.22e-07
genusHaemophilus-0.1221.1e-073.22e-07
speciesRoseburia_hominis0.1221.33e-073.88e-07
speciesParabacteroides_goldsteinii0.1211.42e-074.11e-07
speciesVeillonella_atypica-0.1211.45e-074.17e-07
orderPasteurellales-0.1211.47e-074.18e-07
familyPasteurellaceae-0.1211.47e-074.18e-07
speciesWeissella_confusa-0.1211.49e-074.21e-07
phylumVerrucomicrobia0.1192.32e-076.33e-07
classVerrucomicrobiae0.1192.32e-076.33e-07
orderVerrucomicrobiales0.1192.32e-076.33e-07
familyVerrucomicrobiaceae0.1192.32e-076.33e-07
genusAkkermansia0.1192.32e-076.33e-07
speciesAkkermansia_muciniphila0.1192.32e-076.33e-07
speciesCoprococcus_catus-0.1192.42e-076.55e-07
genusEscherichia-0.1192.43e-076.55e-07
familyBurkholderiales_noname0.1182.99e-078.02e-07
genusBurkholderiales_noname0.1164.73e-071.25e-06
speciesBurkholderiales_bacterium_1_1_470.1164.73e-071.25e-06
speciesEubacterium_sp_3_1_310.1164.75e-071.25e-06
speciesDorea_unclassified0.1164.87e-071.28e-06
speciesPeptostreptococcus_stomatis-0.1155.53e-071.44e-06
speciesEscherichia_coli-0.1146.94e-071.8e-06
genusEnterococcus-0.1148.52e-072.2e-06
familyClostridiaceae0.1148.57e-072.2e-06
speciesButyrivibrio_unclassified0.1121.11e-062.83e-06
familyEnterococcaceae-0.1121.15e-062.92e-06
speciesLactobacillus_mucosae-0.1121.16e-062.93e-06
speciesLactobacillus_rhamnosus-0.1121.18e-062.96e-06
speciesLactobacillus_sanfranciscensis-0.1121.31e-063.27e-06
genusEnterobacter-0.1111.36e-063.38e-06
speciesEnterobacter_cloacae-0.1111.42e-063.51e-06
genusClostridium0.112.05e-065.04e-06
speciesVeillonella_dispar-0.1092.16e-065.28e-06
speciesMegamonas_funiformis-0.1082.86e-066.96e-06
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speciesHaemophilus_paraphrohaemolyticus-0.1029.67e-062.2e-05
speciesC2likevirus_unclassified0.1021.05e-052.38e-05
genusC2likevirus0.1021.09e-052.46e-05
genusButyrivibrio0.1011.1e-052.47e-05
speciesBacteroides_fragilis0.1011.12e-052.51e-05
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speciesErysipelotrichaceae_bacterium_21_30.0982.37e-055.13e-05
speciesLactobacillus_plantarum-0.0972.58e-055.56e-05
speciesLactobacillus_fermentum-0.0972.84e-056.09e-05
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speciesCollinsella_unclassified0.0935.55e-050.000113
speciesEubacterium_hallii-0.0935.89e-050.000119
familyMyoviridae-0.0935.98e-050.000121
speciesLachnospiraceae_bacterium_5_1_57FAA0.0918.67e-050.000174
speciesAcidaminococcus_unclassified0.0918.74e-050.000175
familyPrevotellaceae-0.099.7e-050.000193
speciesEnterobacter_aerogenes-0.090.0001040.000206
speciesEnterococcus_faecium-0.0890.0001160.000229
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speciesRoseburia_unclassified0.0880.0001340.000262
speciesMethanobrevibacter_unclassified0.0880.0001350.000263
speciesRuminococcus_gnavus-0.0880.000140.000272
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genusCitrobacter-0.0840.000270.000508
speciesFusobacterium_nucleatum-0.0830.0003290.000616
speciesClostridium_sp_ATCC_BAA_4420.0830.0003480.000649
speciesBifidobacterium_adolescentis-0.0810.0004240.000788
speciesEubacterium_eligens0.080.0005660.00105
speciesRuminococcus_sp_JC304-0.0790.0005980.0011
speciesEubacterium_biforme-0.0790.0006010.0011
speciesDialister_succinatiphilus-0.0780.000710.0013
speciesErysipelotrichaceae_bacterium_5_2_54FAA0.0780.000750.00137
genusRuminococcus-0.0780.0007730.0014
speciesEscherichia_unclassified-0.0780.0007890.00143
speciesMegasphaera_elsdenii-0.0770.0008090.00146
speciesCitrobacter_unclassified-0.0770.0008210.00147
speciesCitrobacter_freundii-0.0760.0009710.00174
speciesClostridium_sp_KLE_17550.0760.001040.00185
speciesKlebsiella_sp_MS_92_3-0.0760.001050.00186
speciesLactococcus_garvieae-0.0760.001060.00187
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speciesLactobacillus_oris-0.0740.001350.00236
speciesHaemophilus_sputorum-0.0730.001550.0027
genusFusobacterium-0.0730.001560.00271
speciesErysipelotrichaceae_bacterium_2_2_44A0.0720.001710.00296
speciesLactobacillus_vaginalis-0.0720.001760.00303
speciesBlautia_hydrogenotrophica0.0720.00180.00309
speciesPorphyromonas_asaccharolytica0.0720.001860.00318
genusSutterellaceae_unclassified0.0720.001910.00325
phylumFusobacteria-0.0710.002080.00351
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speciesStreptococcus_lutetiensis-0.0710.002230.00375
speciesTuricibacter_unclassified-0.070.002310.00387
speciesErysipelotrichaceae_bacterium_3_1_530.070.002450.00409
familyFusobacteriaceae-0.070.002540.00422
speciesStreptococcus_infantarius-0.0670.003590.00595
genusCoriobacteriaceae_noname0.0670.003790.00625
speciesCoriobacteriaceae_bacterium_phI0.0670.003920.00642
speciesDesulfovibrio_piger0.0670.003920.00642
speciesBacteroides_oleiciplenus0.0660.004170.00681
genusMyoviridae_noname-0.0660.00430.007
speciesFusobacterium_mortiferum-0.0660.004560.0074
genusFaecalibacterium-0.0650.005240.00843
speciesFaecalibacterium_prausnitzii-0.0650.005240.00843
speciesBifidobacterium_catenulatum-0.0650.005250.00843
speciesBlautia_producta0.0640.005480.00877
genusLactococcus-0.0640.005580.00888
speciesMitsuokella_unclassified0.0640.005590.00888
speciesEubacterium_ramulus-0.0640.005840.00925
speciesAnaerostipes_unclassified0.0620.007520.0119
speciesEubacterium_limosum0.0620.007650.012
speciesEggerthella_sp_1_3_56FAA-0.060.009030.0142
genusSlackia-0.060.009180.0143
speciesLactobacillus_ruminis-0.060.009670.0151
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speciesPrevotella_buccae-0.0580.01240.0192
speciesParaprevotella_xylaniphila0.0580.01260.0194
speciesBacteroides_salyersiae0.0570.0130.02
genusMitsuokella0.0570.01340.0205
genusOlsenella-0.0570.01360.0208
genusErysipelotrichaceae_noname-0.0570.01380.0209
speciesAlistipes_unclassified0.0570.01380.0209
speciesMegasphaera_unclassified-0.0570.01410.0213
speciesPrevotella_stercorea-0.0570.01440.0217
genusPantoea-0.0560.01460.0219
speciesPantoea_unclassified-0.0560.01460.0219
speciesHoldemania_sp_AP20.0550.01650.0246
speciesBacteroides_pectinophilus0.0550.01750.0261
speciesRoseburia_inulinivorans-0.0550.01820.027
speciesErysipelotrichaceae_bacterium_6_1_450.0540.01950.0288
speciesAlistipes_sp_HGB50.0540.01950.0288
speciesBacteroides_intestinalis0.0540.01990.0293
orderPseudomonadales-0.0530.02120.031
familySiphoviridae0.0530.02120.031
speciesBacteroides_sp_2_1_220.0530.02130.031
speciesLachnospiraceae_bacterium_8_1_57FAA-0.0530.02170.0315
phylumEuryarchaeota0.0530.02240.0324
familyCampylobacteraceae-0.0520.02350.0339
genusCampylobacter-0.0520.02450.0353
familyRuminococcaceae-0.0520.02530.0363
speciesLactococcus_lactis-0.0520.02540.0363
speciesLactobacillus_delbrueckii-0.050.02930.0418
classEpsilonproteobacteria-0.050.03180.0451
orderCampylobacterales-0.050.03180.0451
familyClostridiales_Family_XI_Incertae_Sedis-0.0490.03290.0465
speciesBifidobacterium_animalis-0.0490.03430.0483
classMethanobacteria0.0480.0390.0545
orderMethanobacteriales0.0480.0390.0545
familyMethanobacteriaceae0.0480.0390.0545
speciesSlackia_piriformis-0.0480.03960.0551
genusPorphyromonas0.0470.04140.0573
genusSutterella0.0470.04140.0573
genusMethanobrevibacter0.0470.04190.0578
speciesBifidobacterium_angulatum0.0470.04310.0593
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genusParvimonas-0.0460.0450.0616
speciesClostridium_nexile-0.0460.0460.0628
speciesBacteroides_eggerthii0.0460.04880.0664
speciesLachnospiraceae_bacterium_1_4_56FAA0.0450.05120.0694
speciesEubacterium_dolichum0.0450.05150.0697
speciesCoprobacillus_unclassified-0.0450.05230.0705
genusCoprobacillus-0.0450.05360.0721
speciesKlebsiella_unclassified-0.0440.05450.0731
speciesBacteroides_salanitronis0.0440.05880.0786
speciesEubacterium_rectale-0.0430.06320.0843
speciesSutterella_wadsworthensis0.0430.06380.0848
speciesPorphyromonas_uenonis0.0420.06660.0883
speciesLactobacillus_crispatus-0.0420.07160.0945
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orderErysipelotrichales-0.0420.07230.0945
familyErysipelotrichaceae-0.0420.07230.0945
speciesOlsenella_unclassified-0.0420.07230.0945
speciesBifidobacterium_breve-0.0410.07320.0954
speciesLactobacillus_amylovorus-0.0410.07360.0957
speciesAcidaminococcus_fermentans-0.0410.07730.1
genusMorganella0.0410.07820.101
genusAcidaminococcus0.0410.07820.101
speciesMorganella_morganii0.0410.07820.101
speciesBacteroides_stercoris0.0410.07960.102
familyPropionibacteriaceae-0.040.08020.103
speciesMethanobrevibacter_smithii0.040.08240.105
genusPeptoniphilus0.0370.1110.141
speciesEubacterium_ventriosum-0.0370.1130.143
speciesStreptococcus_pasteurianus-0.0350.1350.17
speciesClostridium_ramosum-0.0350.1350.17
speciesBacteroides_sp_1_1_60.0340.1370.172
speciesPrevotella_bivia0.0340.1440.181
familyEubacteriaceae-0.0320.1610.201
genusEubacterium-0.0320.1610.201
genusButyricicoccus0.0320.1620.201
speciesButyricicoccus_pullicaecorum0.0320.1620.201
familyPodoviridae0.0320.1720.213
speciesDialister_invisus0.0310.180.222
speciesOdoribacter_laneus0.0310.1850.228
genusStaphylococcus-0.0290.2030.249
familySuccinivibrionaceae0.0290.2040.249
speciesParabacteroides_sp_20_30.0290.2040.249
genusCatenibacterium-0.0280.2220.27
speciesCatenibacterium_mitsuokai-0.0280.2220.27
speciesLactobacillus_acidophilus-0.0280.2260.274
genusSuccinatimonas0.0280.2340.282
speciesSuccinatimonas_hippei0.0280.2340.282
familyStaphylococcaceae-0.0270.2360.284
speciesEubacterium_cylindroides0.0270.2440.293
speciesLachnospiraceae_bacterium_2_1_58FAA-0.0270.2460.295
genusGordonibacter0.0260.2520.3
speciesGordonibacter_pamelaeae0.0260.2520.3
speciesRuminococcus_lactaris0.0260.2520.3
speciesStreptococcus_phage_Sfi210.0260.2540.301
speciesButyrivibrio_crossotus0.0260.2620.31
speciesEggerthella_lenta-0.0260.270.319
speciesProteus_mirabilis0.0250.2720.32
orderCaudovirales0.0250.2780.326
phylumProteobacteria-0.0250.2890.338
speciesStreptococcus_thermophilus-0.0230.3190.373
speciesLachnospiraceae_bacterium_9_1_43BFAA0.0220.3330.388
speciesOdoribacter_unclassified0.0220.3430.399
speciesRuminococcus_bromii-0.0220.3490.405
speciesKlebsiella_phage_KP360.0210.3640.421
speciesBacteroides_sp_3_1_190.020.3880.448
genusPyramidobacter0.0190.4080.467
speciesPyramidobacter_piscolens0.0190.4080.467
speciesRuminococcus_torques-0.0190.4080.467
speciesFusobacterium_varium-0.0190.4140.473
genusParaprevotella0.0180.4260.486
familyViruses_noname-0.0180.430.488
genusViruses_noname-0.0180.430.488
speciesCollinsella_tanakaei0.0180.4390.497
speciesParaprevotella_unclassified0.0180.4480.506
speciesLactococcus_phage_phi70.0170.4610.516
phylumSynergistetes0.0170.4620.516
classSynergistia0.0170.4620.516
orderSynergistales0.0170.4620.516
familySynergistaceae0.0170.4620.516
speciesLactococcus_phage_P680-0.0160.4910.547
speciesRoseburia_intestinalis-0.0160.4950.55
speciesRuminococcus_champanellensis0.0160.4980.552
genusLambdalikevirus-0.0150.5040.557
genusTunalikevirus0.0150.510.562
speciesFusobacterium_ulcerans-0.0150.5240.577
genusAdlercreutzia-0.0150.530.58
speciesAdlercreutzia_equolifaciens-0.0150.530.58
orderAeromonadales0.0140.5340.583
speciesPeptostreptococcus_anaerobius0.0140.5360.584
genusEggerthella-0.0140.5450.593
speciesClostridium_spiroforme0.0140.5540.601
speciesEggerthella_unclassified-0.0140.5580.603
speciesBacteroides_massiliensis0.0140.5580.603
speciesLachnospiraceae_bacterium_6_1_63FAA0.0130.5770.622
speciesLactococcus_phage_bIL670.0120.6070.653
speciesParabacteroides_sp_D130.0120.6160.661
speciesAcidaminococcus_intestini-0.0110.6330.677
genusLachnospiraceae_noname-0.0110.6430.687
genusRoseburia-0.0110.6490.691
speciesParaprevotella_clara0.010.6760.719
speciesBacteroides_barnesiae0.0090.6930.734
speciesCollinsella_intestinalis0.0090.6940.734
genusSiphoviridae_noname-0.0080.7440.786
phylumViruses_noname0.0070.7680.807
classViruses_noname0.0070.7680.807
speciesBacteroides_coprophilus-0.0060.780.818
speciesLactococcus_phage_jm20.0060.7930.83
speciesClostridium_sp_L2_50-0.0050.8210.857
speciesBacteroides_finegoldii-0.0050.830.864
speciesCoprobacillus_sp_D6-0.0050.8310.864
orderViruses_noname0.0030.880.913
speciesEnterobacteria_phage_HK5440.0030.8820.913
speciesBacteroides_sp_4_3_47FAA0.0030.8870.915
genusMethanosphaera0.0030.8920.915
speciesLachnospiraceae_bacterium_2_1_46FAA0.0030.8920.915
speciesMethanosphaera_stadtmanae0.0030.8920.915
speciesCoprococcus_sp_ART55_1-0.0030.9050.927
speciesLachnospiraceae_bacterium_1_1_57FAA0.0030.9140.934
genusPhascolarctobacterium-0.0020.9260.942
speciesPhascolarctobacterium_succinatutens-0.0020.9260.942
speciesCoprococcus_eutactus-0.0020.9390.953
speciesRuminococcus_callidus0.0010.9510.958
speciesLactobacillus_reuteri0.0010.9520.958
speciesSutterella_parvirubra0.0010.9520.958
speciesCoprobacillus_sp_29_1-0.0010.9520.958
speciesBacteroides_fluxus0.0010.9770.981
genusProteus0.00.9830.985
genusDialister0.00.990.99
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Association of query gene abundance with clinical phenotypes:

Boxplots:


Statistics:

pheno country case_n ctrl_n case_mean ctrl_mean pvalue rank percentile
Type II diabetesChina1831850.04410736226420.03284890774320.00043154475530512394.09465
Rheumatoid arthritisChina127980.03502237355670.0278437040410.029866618547822127.37653
Type II diabetesDenmark752770.05788132537550.04982910203110.1655939354941193339.1156
Colorectal cancerAustria64350.02677384741910.02538130985860.373847813171436848.6128
Ulcerative colitisSpain78660.04072167172610.04318526814120.4993223355791909662.994
ObesityDenmark1691230.04955580523270.0497615939990.5008605993831934063.5954
Liver cirrhosisChina1201140.0407510726370.03644161752630.6877014947672658989.3177
Crohns diseaseSpain17660.04580237160890.04318526814120.7392313098412705689.9618
Type II diabetesSweden53920.03123183128780.02765035714430.9517294313892821895.5571
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Citation:

Nayfach S, Fischbach MA, Pollard KS. MetaQuery: a web server for rapid annotation and quantitative analysis of specific genes in the human gut microbiome. Bioinformatics 2015;31(14). doi:10.1093/bioinformatics/btv382