MetaQuery: quantitative analysis of the human gut microbiome

Results

Estimated gene abundances and results from statistical analyses

Job details:

Submission date: 2021-01-24 09:52:55 PST
Job id & description: 2378, guanosine5
Query type: protein
Count queries & homologs: 100, 100
Min % identity & max e-value: 100%, 1e-5
Min % query & target coverage: 95%, 95%

Click here to download results

Table of contents:


Gut microbiome genes homologous to your query gene:

query_id target_id status kegg eggnog phylum genus query_cov target_cov percent_identity
O2.UC15-1_GL01017573304193CompleteK03783COG0005FirmicutesDorea100.0100.0100.0
V1.CD20-4_GL00861613305576CompleteK03783COG0005FirmicutesBlautia100.0100.0100.0
V1.UC52-1_GL01219583307759CompleteK03783COG0005Firmicutesunknown100.0100.0100.0
457421.CBFG_038813311971CompleteK03783COG0005Firmicutesunknown100.0100.0100.0
MH0057_GL00089073296887CompleteK03783COG0005unknownunknown100.0100.0100.0
MH0191_GL00473673298917CompleteK03783COG0005FirmicutesDorea100.0100.0100.0
MH0230_GL01601223299583CompleteK03783COG0005FirmicutesDorea100.0100.0100.0
159632143-stool1_revised3310911CompleteK03783COG0005unknownunknown100.0100.0100.0
MH0066_GL00230053296973Lack 5'-endK03783COG0005unknownunknown100.0100.0100.0
MH0130_GL00519303297945CompleteK03783COG0005unknownunknown100.0100.0100.0
MH0261_GL00040003300084CompleteK03783COG0005unknownunknown100.0100.0100.0
MH0370_GL00961443301878CompleteK03783COG0005unknownunknown100.0100.0100.0
O2.UC12-1_GL01469493304117CompleteK03783COG0005unknownunknown100.0100.0100.0
V1.CD6-0-PN_GL01493193306150CompleteK03783COG0005unknownunknown100.0100.0100.0
MH0023_GL00254273296539CompleteK03783COG0005unknownunknown100.0100.0100.0
MH0097_GL00866073297371CompleteK03783COG0005unknownunknown100.0100.0100.0
MH0222_GL01980853315721CompleteK03783COG0005unknownunknown100.0100.0100.0
MH0447_GL02605723303607Lack 5'-endK03783COG0005BacteroidetesPrevotella100.0100.0100.0
MH0458_GL00400633303841CompleteK03783COG0005unknownunknown100.0100.0100.0
V1.CD15-3_GL00351633305484CompleteK03783COG0005Firmicutesunknown100.0100.0100.0
MH0188_GL01719943298793CompleteK03783COG0005unknownunknown100.0100.0100.0
MH0372_GL00943533301946CompleteK03783COG0005FirmicutesCoprobacillus100.0100.0100.0
158337416-stool2_revised3310483CompleteK03783COG0005unknownunknown100.0100.0100.0
158499257-stool2_revised3294524CompleteK03783COG0005unknownunknown100.0100.0100.0
MH0415_GL00442483302837CompleteK03783COG0005unknownunknown100.0100.0100.0
T2D-108A_GL01113263293289CompleteK03783COG0005unknownunknown100.0100.0100.0
T2D-63A_GL00413473293920CompleteK03783COG0005FirmicutesStreptococcus100.0100.0100.0
638301.HMPREF0444_05413295911CompleteK03783COG0005FirmicutesGranulicatella100.0100.0100.0
DOF003_GL00877003292183Lack 5'-endK03783COG0005BacteroidetesBacteroides100.0100.0100.0
MH0050_GL00043123296760CompleteK03783COG0005unknownunknown100.0100.0100.0
MH0247_GL00201593316104CompleteK03783COG0005BacteroidetesAlistipes100.0100.0100.0
MH0257_GL00515223316250CompleteK03783COG0005Bacteroidetesunknown100.0100.0100.0
MH0411_GL01562283302782CompleteK03783COG0005unknownunknown100.0100.0100.0
MH0453_GL00461993303752CompleteK03783COG0005unknownunknown100.0100.0100.0
V1.UC54-4_GL00095333307813CompleteK03783COG0005unknownunknown100.0100.0100.0
158802708-stool1_revised3310662CompleteK03783COG0005unknownunknown100.0100.0100.0
764588959-stool1_revised3311591CompleteK03783COG0005unknownunknown100.0100.0100.0
MH0055_GL00659133313117CompleteK03783COG0005Bacteroidetesunknown100.0100.0100.0
MH0211_GL00958443299328CompleteK03783COG0005unknownunknown100.0100.0100.0
O2.UC35-1_GL00735033304699CompleteK03783COG0005unknownunknown100.0100.0100.0
1069533.Sinf_07053311773CompleteK03783COG0005FirmicutesStreptococcus100.0100.0100.0
158499257-stool1_revised3310593CompleteK03783COG0005unknownunknown100.0100.0100.0
638754422-stool1_revised3295072CompleteK03783COG0005unknownunknown100.0100.0100.0
DOF010_GL00113983308290CompleteK03783COG0005FirmicutesStreptococcus100.0100.0100.0
MH0069_GL00032593313250CompleteK03783COG0005BacteroidetesBacteroides100.0100.0100.0
MH0187_GL01144943298725CompleteK03783COG0005unknownunknown100.0100.0100.0
MH0369_GL01156033301825CompleteK03783COG0005unknownunknown100.0100.0100.0
O2.CD2-0-PT_GL00588883303935CompleteK03783COG0005FirmicutesCoprobacillus100.0100.0100.0
V1.CD18-0_GL00711163305543CompleteK03783COG0005FirmicutesStreptococcus100.0100.0100.0
158458797-stool1_revised3294400CompleteK03783COG0005unknownunknown100.0100.0100.0
MH0002_GL00311073312226CompleteK03783COG0005BacteroidetesBacteroides100.0100.0100.0
MH0003_GL00948753312292CompleteK03783COG0005BacteroidetesBacteroides100.0100.0100.0
MH0004_GL00328963312316CompleteK03783COG0005BacteroidetesBacteroides100.0100.0100.0
MH0011_GL01032153312522CompleteK03783COG0005BacteroidetesBacteroides100.0100.0100.0
MH0025_GL00659273312772CompleteK03783COG0005BacteroidetesBacteroides100.0100.0100.0
MH0052_GL00457363313029CompleteK03783COG0005BacteroidetesBacteroides100.0100.0100.0
MH0054_GL00819203313080CompleteK03783COG0005BacteroidetesBacteroides100.0100.0100.0
MH0057_GL00097123313124CompleteK03783COG0005Bacteroidetesunknown100.0100.0100.0
MH0079_GL00387073313341CompleteK03783COG0005BacteroidetesBacteroides100.0100.0100.0
MH0110_GL00399253297610CompleteK03783COG0005unknownunknown100.0100.0100.0
MH0113_GL00928213313891CompleteK03783COG0005Bacteroidetesunknown100.0100.0100.0
MH0187_GL00588593314978CompleteK03783COG0005Bacteroidetesunknown100.0100.0100.0
MH0189_GL01130623315124CompleteK03783COG0005Bacteroidetesunknown100.0100.0100.0
MH0192_GL00966973315202CompleteK03783COG0005Bacteroidetesunknown100.0100.0100.0
MH0196_GL00903173315284CompleteK03783COG0005Bacteroidetesunknown100.0100.0100.0
MH0198_GL01423793315383CompleteK03783COG0005Bacteroidetesunknown100.0100.0100.0
MH0239_GL00868373315979CompleteK03783COG0005Bacteroidetesunknown100.0100.0100.0
MH0243_GL00039893316015CompleteK03783COG0005BacteroidetesBacteroides100.0100.0100.0
MH0243_GL00348443316019CompleteK03783COG0005unknownunknown100.0100.0100.0
MH0264_GL00334493316386CompleteK03783COG0005unknownunknown100.0100.0100.0
MH0281_GL01320903316734CompleteK03783COG0005BacteroidetesBacteroides100.0100.0100.0
MH0314_GL00134103317064CompleteK03783COG0005BacteroidetesBacteroides100.0100.0100.0
MH0355_GL01373183301519CompleteK03783COG0005unknownunknown100.0100.0100.0
765560005-stool1_revised3311682CompleteK03783COG0005unknownunknown100.0100.0100.0
MH0004_GL00185853312307CompleteK03783COG0005BacteroidetesBacteroides100.0100.0100.0
MH0011_GL00520433312502CompleteK03783COG0005BacteroidetesBacteroides100.0100.0100.0
MH0033_GL00522533312847CompleteK03783COG0005Bacteroidetesunknown100.0100.0100.0
MH0037_GL00472743312886CompleteK03783COG0005BacteroidetesBacteroides100.0100.0100.0
MH0055_GL00491323313108CompleteK03783COG0005BacteroidetesBacteroides100.0100.0100.0
MH0142_GL00649793314334CompleteK03783COG0005unknownunknown100.0100.0100.0
MH0143_GL00145193314352CompleteK03783COG0005BacteroidetesBacteroides100.0100.0100.0
MH0252_GL02141893299969CompleteK03783COG0005unknownunknown100.0100.0100.0
MH0267_GL00897343316441CompleteK03783COG0005BacteroidetesBacteroides100.0100.0100.0
763597684-stool1_revised3311296CompleteK03783COG0005unknownunknown100.0100.0100.0
888825.HMPREF9398_12043312187CompleteK03783COG0005FirmicutesStreptococcus100.0100.0100.0
O2.UC28-1_GL01064303304531CompleteK03783COG0005unknownunknown100.0100.0100.0
158499257-stool1_revised3310595CompleteK03783COG0005unknownunknown100.0100.0100.0
MH0410_GL01681673302764CompleteK03783COG0005unknownunknown100.0100.0100.0
NLM027_GL00093023292469Lack 5'-endK03783COG0005FirmicutesStreptococcus100.0100.0100.0
V1.CD15-3_GL00930203305501CompleteK03783COG0005unknownunknown100.0100.0100.0
158499257-stool1_revised3310584CompleteK03783COG0005unknownunknown100.0100.0100.0
388919.SSA_12593311836CompleteK03783COG0005FirmicutesStreptococcus100.0100.0100.0
MH0337_GL00483133301240CompleteK03783COG0005unknownunknown100.0100.0100.0
DLM014_GL00525333308183CompleteK03783COG0005unknownunknown100.0100.0100.0
MH0003_GL00724853312282CompleteK03783COG0005unknownunknown100.0100.0100.0
MH0116_GL00825233297696CompleteK03783COG0005unknownunknown100.0100.0100.0
MH0281_GL00882173316724CompleteK03783COG0005unknownunknown100.0100.0100.0
MH0429_GL00806023303135CompleteK03783COG0005unknownunknown100.0100.0100.0
MH0309_GL01341063300789CompleteK03783COG0005unknownunknown100.0100.0100.0
MH0003_GL00277373312265CompleteK03783COG0005FirmicutesStreptococcus100.0100.0100.0
Click on arrows to sort table data. Shift+click to sort by multiple columns.

The abundance of your query across gut microbiome samples:




The prevalence of your query across gut microbiome samples:




Taxonomic groups correlated with your query gene:

tax_level tax_name spearman_rho pvalue qvalue
classBacteroidia0.691.31e-2642.12e-262
orderBacteroidales0.691.31e-2642.12e-262
phylumBacteroidetes0.691.35e-2642.12e-262
classClostridia-0.5712.31e-1622.18e-160
orderClostridiales-0.5712.31e-1622.18e-160
phylumFirmicutes-0.5691.19e-1609.36e-159
familyRuminococcaceae-0.513.92e-1242.64e-122
familyBacteroidaceae0.4814.85e-1092.54e-107
genusBacteroides0.4814.85e-1092.54e-107
phylumActinobacteria-0.4593.63e-981.56e-96
classActinobacteria-0.4593.63e-981.56e-96
orderCoriobacteriales-0.4581.37e-974.97e-96
familyCoriobacteriaceae-0.4581.37e-974.97e-96
speciesRuminococcus_obeum-0.4485.75e-931.94e-91
genusSubdoligranulum-0.425.87e-811.85e-79
genusRuminococcus-0.4186.71e-801.98e-78
speciesSubdoligranulum_unclassified-0.4162.72e-797.55e-78
speciesEubacterium_hallii-0.4041.62e-744.25e-73
genusDorea-0.4013.64e-739.04e-72
speciesBacteroides_vulgatus0.3782.05e-644.84e-63
speciesCoprococcus_catus-0.3774.52e-641.02e-62
familyLachnospiraceae-0.3736.18e-631.33e-61
orderBifidobacteriales-0.3657.46e-601.47e-58
familyBifidobacteriaceae-0.3657.46e-601.47e-58
genusBifidobacterium-0.3611.33e-582.51e-57
genusCoprococcus-0.3491.27e-542.31e-53
speciesDorea_longicatena-0.3461.41e-532.46e-52
speciesAnaerostipes_hadrus-0.3443.73e-536.29e-52
genusAnaerostipes-0.3346.96e-501.13e-48
speciesCoprococcus_comes-0.331.16e-481.83e-47
genusBlautia-0.3277.72e-481.18e-46
speciesRuminococcus_sp_5_1_39BFAA-0.3231.11e-461.64e-45
genusAdlercreutzia-0.3231.29e-461.79e-45
speciesAdlercreutzia_equolifaciens-0.3231.29e-461.79e-45
speciesDorea_formicigenerans-0.3222.2e-462.97e-45
phylumVerrucomicrobia-0.3175.1e-455.87e-44
classVerrucomicrobiae-0.3175.1e-455.87e-44
orderVerrucomicrobiales-0.3175.1e-455.87e-44
familyVerrucomicrobiaceae-0.3175.1e-455.87e-44
genusAkkermansia-0.3175.1e-455.87e-44
speciesAkkermansia_muciniphila-0.3175.1e-455.87e-44
familyActinomycetaceae-0.3137.34e-448.25e-43
orderActinomycetales-0.3112.86e-433.14e-42
classBetaproteobacteria0.315.46e-435.86e-42
familySutterellaceae0.315.92e-436.16e-42
genusParabacteroides0.316e-436.16e-42
genusActinomyces-0.3091.04e-421.04e-41
genusCollinsella-0.3091.42e-421.4e-41
speciesClostridium_leptum-0.3081.77e-421.7e-41
orderBurkholderiales0.3082.07e-421.95e-41
speciesCollinsella_aerofaciens-0.3061.03e-419.53e-41
genusPrevotella0.3021.34e-401.22e-39
speciesRuminococcus_torques-0.32.9e-402.58e-39
speciesRuminococcus_bromii-0.2994.74e-404.14e-39
speciesPrevotella_copri0.2971.63e-391.4e-38
speciesBifidobacterium_adolescentis-0.2972.47e-392.08e-38
speciesBifidobacterium_longum-0.2963.17e-392.62e-38
speciesErysipelotrichaceae_bacterium_21_3-0.2955.65e-394.6e-38
classMethanobacteria-0.2941.12e-388.67e-38
orderMethanobacteriales-0.2941.12e-388.67e-38
familyMethanobacteriaceae-0.2941.12e-388.67e-38
genusMethanobrevibacter-0.2933.01e-382.29e-37
speciesMethanobrevibacter_smithii-0.291.79e-371.34e-36
phylumEuryarchaeota-0.2893.47e-372.56e-36
speciesStreptococcus_thermophilus-0.2877.64e-375.55e-36
genusGordonibacter-0.2861.55e-361.09e-35
speciesGordonibacter_pamelaeae-0.2861.55e-361.09e-35
familyEubacteriaceae-0.2844.74e-363.29e-35
genusEubacterium-0.2845.68e-363.89e-35
speciesBacteroides_thetaiotaomicron0.2837.57e-365.1e-35
speciesBacteroides_plebeius0.2839.73e-366.47e-35
classErysipelotrichia-0.2797.46e-354.76e-34
orderErysipelotrichales-0.2797.46e-354.76e-34
familyErysipelotrichaceae-0.2797.46e-354.76e-34
speciesBacteroides_xylanisolvens0.2781.78e-341.12e-33
familyPrevotellaceae0.2751.06e-336.58e-33
speciesEubacterium_ramulus-0.2733.22e-331.97e-32
speciesEubacterium_siraeum-0.2716.74e-334.08e-32
genusLachnospiraceae_noname-0.262.75e-301.64e-29
speciesAnaerotruncus_unclassified-0.2595.38e-303.17e-29
speciesLachnospiraceae_bacterium_5_1_63FAA-0.2596.22e-303.62e-29
genusOlsenella-0.2587.16e-304.12e-29
speciesBacteroides_ovatus0.2545.3e-293.01e-28
classBacilli-0.2521.38e-287.75e-28
orderLactobacillales-0.2521.4e-287.77e-28
speciesBacteroides_stercoris0.2481.15e-276.31e-27
speciesOlsenella_unclassified-0.2431.68e-269.11e-26
genusAnaerotruncus-0.2422.73e-261.46e-25
familyStreptococcaceae-0.2355.93e-253.14e-24
genusStreptococcus-0.235.94e-243.12e-23
speciesLachnospiraceae_bacterium_3_1_57FAA_CT1-0.237.41e-243.84e-23
genusErysipelotrichaceae_noname-0.2264.74e-232.43e-22
familyPeptostreptococcaceae-0.2255.5e-232.79e-22
genusHaemophilus0.2241.07e-225.37e-22
speciesHaemophilus_parainfluenzae0.2241.15e-225.71e-22
orderPasteurellales0.2222.66e-221.29e-21
familyPasteurellaceae0.2222.66e-221.29e-21
genusPeptostreptococcaceae_noname-0.2155.03e-212.42e-20
speciesStreptococcus_sanguinis-0.2131.12e-205.34e-20
genusPseudoflavonifractor-0.2121.69e-207.9e-20
speciesPseudoflavonifractor_capillosus-0.2121.69e-207.9e-20
genusSolobacterium-0.2095.58e-202.56e-19
speciesSolobacterium_moorei-0.2095.58e-202.56e-19
familyPorphyromonadaceae0.2044.48e-192.03e-18
genusPropionibacterium-0.2012.05e-189.22e-18
familyBacillales_noname-0.22.25e-189.93e-18
genusGemella-0.22.25e-189.93e-18
speciesBacteroides_massiliensis0.22.63e-181.15e-17
speciesStreptococcus_parasanguinis-0.1993.44e-181.49e-17
speciesPropionibacterium_freudenreichii-0.1976.94e-182.98e-17
phylumFusobacteria0.1978.6e-183.59e-17
classFusobacteriia0.1978.6e-183.59e-17
orderFusobacteriales0.1978.6e-183.59e-17
speciesLachnospiraceae_bacterium_3_1_46FAA-0.1961.36e-175.63e-17
speciesMegamonas_unclassified0.1952.02e-178.29e-17
genusMegamonas0.1942.73e-171.11e-16
orderBacillales-0.1924.59e-171.85e-16
familyFusobacteriaceae0.1925.39e-172.16e-16
genusFusobacterium0.1925.59e-172.22e-16
speciesFusobacterium_mortiferum0.1918.65e-173.4e-16
speciesMethanobrevibacter_unclassified-0.1891.6e-166.24e-16
speciesMegamonas_rupellensis0.1873.07e-161.19e-15
familyEnterococcaceae-0.1841.17e-154.49e-15
speciesClostridium_bartlettii-0.1831.8e-156.85e-15
genusEnterococcus-0.1822.13e-158.04e-15
speciesErysipelotrichaceae_bacterium_6_1_45-0.1822.25e-158.43e-15
speciesParabacteroides_distasonis0.1822.43e-159.03e-15
speciesEggerthella_lenta-0.1822.5e-159.22e-15
speciesMitsuokella_unclassified-0.1795.49e-152.01e-14
speciesStreptococcus_salivarius-0.1788.68e-153.15e-14
speciesLactobacillus_casei_paracasei-0.1771.16e-144.18e-14
genusButyrivibrio-0.1752.28e-148.15e-14
genusMitsuokella-0.1734.66e-141.65e-13
genusRothia-0.1735.2e-141.83e-13
familyMicrococcaceae-0.1726.53e-142.28e-13
speciesStreptococcus_mutans-0.1727.84e-142.72e-13
familyLactobacillaceae-0.171.42e-134.89e-13
speciesBacteroides_coprocola0.171.5e-135.13e-13
genusLactococcus-0.1673.97e-131.35e-12
genusLactobacillus-0.1674.22e-131.42e-12
speciesEubacterium_rectale-0.1665.19e-131.74e-12
familyPropionibacteriaceae-0.1665.29e-131.76e-12
speciesLactobacillus_rhamnosus-0.1665.88e-131.94e-12
speciesLactococcus_lactis-0.1648.45e-132.77e-12
speciesLactococcus_phage_P680-0.1631.49e-124.85e-12
genusLeuconostoc-0.1621.89e-126.11e-12
speciesStreptococcus_gordonii-0.1612.87e-129.22e-12
speciesBacteroides_finegoldii0.1594.59e-121.46e-11
speciesMegamonas_hypermegale0.1594.94e-121.56e-11
speciesRothia_mucilaginosa-0.1551.63e-115.13e-11
speciesSubdoligranulum_sp_4_3_54A2FAA-0.1541.87e-115.85e-11
speciesBifidobacterium_catenulatum-0.1523.79e-111.18e-10
speciesEnterococcus_faecium-0.1523.92e-111.21e-10
phylumProteobacteria0.1524.25e-111.3e-10
speciesMegamonas_funiformis0.1515.8e-111.77e-10
speciesErysipelotrichaceae_bacterium_2_2_44A-0.156.54e-111.98e-10
speciesStreptococcus_vestibularis-0.1499.48e-112.85e-10
speciesClostridium_nexile0.1462.51e-107.48e-10
genusSiphoviridae_noname-0.1462.52e-107.48e-10
speciesBlautia_hydrogenotrophica-0.1452.67e-107.88e-10
speciesBifidobacterium_dentium-0.1453.41e-101e-09
speciesRuminococcus_gnavus0.1443.68e-101.07e-09
speciesBifidobacterium_animalis-0.1444.48e-101.3e-09
speciesLactobacillus_delbrueckii-0.1426.77e-101.95e-09
speciesLachnospiraceae_bacterium_7_1_58FAA-0.1427.29e-102.09e-09
genusFlavonifractor0.141.09e-093.08e-09
speciesFlavonifractor_plautii0.141.09e-093.08e-09
familyBacteroidales_noname-0.141.18e-093.28e-09
genusBacteroidales_noname-0.141.18e-093.28e-09
speciesBacteroidales_bacterium_ph8-0.141.18e-093.28e-09
speciesEubacterium_ventriosum-0.1391.41e-093.89e-09
speciesButyrivibrio_crossotus-0.1391.62e-094.45e-09
speciesKlebsiella_pneumoniae0.1391.74e-094.75e-09
genusDialister-0.1381.96e-095.32e-09
familyClostridiales_Family_XI_Incertae_Sedis-0.1372.96e-097.98e-09
speciesPrevotella_stercorea0.1373e-098.05e-09
phylumViruses_noname-0.1363.29e-098.72e-09
classViruses_noname-0.1363.29e-098.72e-09
speciesRuminococcus_sp_JC304-0.1354.05e-091.07e-08
genusBarnesiella-0.1354.47e-091.17e-08
speciesBarnesiella_intestinihominis-0.1354.47e-091.17e-08
genusHoldemania-0.1354.82e-091.25e-08
genusTuricibacter-0.1355.21e-091.34e-08
speciesCoprococcus_eutactus-0.1355.21e-091.34e-08
speciesParabacteroides_merdae0.1337.23e-091.84e-08
speciesFusobacterium_varium0.1329.47e-092.4e-08
speciesTuricibacter_sanguinis-0.1311.22e-083.08e-08
familySiphoviridae-0.1311.41e-083.54e-08
speciesLactobacillus_plantarum-0.131.51e-083.77e-08
speciesAlistipes_senegalensis-0.131.82e-084.52e-08
genusEggerthella-0.1292.1e-085.19e-08
speciesStreptococcus_australis-0.1282.97e-087.3e-08
speciesCoprococcus_sp_ART55_1-0.1283.13e-087.65e-08
speciesTuricibacter_unclassified-0.1273.19e-087.76e-08
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genusKlebsiella0.1165.22e-071.16e-06
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speciesEggerthella_unclassified-0.1156.46e-071.42e-06
speciesClostridium_citroniae0.1156.75e-071.47e-06
speciesParabacteroides_unclassified0.1156.77e-071.47e-06
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genusParvimonas-0.1148.23e-071.77e-06
familyOxalobacteraceae-0.1139.23e-071.97e-06
speciesOdoribacter_splanchnicus0.1139.63e-072.05e-06
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speciesVeillonella_atypica0.1111.4e-062.92e-06
speciesBacteroides_caccae0.1111.46e-063.04e-06
genusParasutterella0.1111.58e-063.26e-06
speciesParasutterella_excrementihominis0.1111.58e-063.26e-06
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speciesLachnospiraceae_bacterium_2_1_46FAA0.1092.26e-064.62e-06
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speciesRuminococcaceae_bacterium_D16-0.1073.89e-067.8e-06
speciesBacteroides_pectinophilus-0.1073.9e-067.8e-06
speciesGemella_morbillorum-0.1064.46e-068.88e-06
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speciesLactococcus_phage_jm2-0.1064.74e-069.36e-06
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speciesClostridium_sp_L2_50-0.1037.89e-061.53e-05
speciesPrevotella_buccae0.11.36e-052.63e-05
speciesBacteroides_coprophilus0.11.44e-052.77e-05
speciesVeillonella_parvula0.11.61e-053.09e-05
speciesEubacterium_limosum-0.0972.76e-055.27e-05
genusAggregatibacter0.0962.97e-055.65e-05
genusMegasphaera0.0963.51e-056.65e-05
speciesPorphyromonas_asaccharolytica-0.0944.7e-058.82e-05
speciesLactobacillus_gasseri-0.0944.7e-058.82e-05
speciesEubacterium_biforme-0.0944.71e-058.82e-05
genusSutterella0.0935.46e-050.000102
genusPeptostreptococcus-0.0926.71e-050.000125
speciesEubacterium_cylindroides-0.0926.94e-050.000128
genusPorphyromonas-0.0918.11e-050.00015
speciesEggerthella_sp_1_3_56FAA-0.0918.3e-050.000152
speciesBilophila_unclassified0.0918.7e-050.000159
familyVeillonellaceae0.0890.0001080.000197
speciesAggregatibacter_segnis0.0890.0001140.000207
speciesClostridiales_bacterium_1_7_47FAA0.0890.0001240.000224
genusBilophila0.0880.0001340.000241
speciesBacteroides_uniformis0.0870.0001650.000296
speciesCollinsella_tanakaei0.0870.0001710.000306
classNegativicutes0.0870.0001760.000312
orderSelenomonadales0.0870.0001760.000312
familyBurkholderiales_noname0.0860.0001820.000322
genusBurkholderiales_noname0.0850.000220.000386
speciesBurkholderiales_bacterium_1_1_470.0850.000220.000386
speciesHoldemania_unclassified-0.0850.0002230.00039
speciesAlistipes_sp_AP11-0.0850.0002450.000427
speciesParabacteroides_johnsonii0.0840.0002540.000441
speciesOdoribacter_laneus-0.0840.0002630.000455
speciesBacteroides_sp_2_1_220.0840.000280.000482
speciesStreptococcus_pasteurianus0.0840.0003010.000517
genusDesulfovibrio-0.0830.0003440.000588
speciesAlistipes_onderdonkii-0.0820.000390.000665
speciesPeptostreptococcus_stomatis-0.080.0005770.00098
speciesButyrivibrio_unclassified-0.0790.0006120.00104
speciesBacteroides_fragilis0.0790.0006440.00109
speciesSutterella_wadsworthensis0.0790.0006750.00113
speciesC2likevirus_unclassified-0.0780.000740.00124
speciesMegasphaera_micronuciformis0.0770.0008380.0014
speciesSutterella_parvirubra0.0770.000850.00141
genusActinobacillus0.0770.0008890.00147
speciesActinobacillus_unclassified0.0770.0008890.00147
genusC2likevirus-0.0760.0009430.00155
genusClostridium-0.0740.001360.00223
familyClostridiaceae-0.0740.001380.00225
speciesBlautia_producta-0.0740.001430.00233
genusFaecalibacterium-0.0740.001440.00233
speciesFaecalibacterium_prausnitzii-0.0740.001440.00233
speciesLactobacillus_fermentum-0.0730.001550.0025
speciesBifidobacterium_bifidum-0.0720.001950.00313
speciesCampylobacter_concisus0.0710.002170.00347
genusCatenibacterium-0.070.002550.00405
speciesCatenibacterium_mitsuokai-0.070.002550.00405
speciesParaprevotella_xylaniphila0.070.002580.00409
speciesDorea_unclassified0.0690.002670.00421
speciesClostridium_symbiosum0.0680.003130.00492
speciesRuminococcus_callidus-0.0680.003370.00528
speciesLactobacillus_amylovorus-0.0660.004060.00635
orderViruses_noname-0.0660.004480.00698
speciesPorphyromonas_uenonis-0.0650.004970.00772
speciesLactococcus_phage_phi7-0.0650.005180.00802
speciesParabacteroides_goldsteinii0.0650.005260.00811
speciesAcidaminococcus_fermentans-0.0630.006410.00986
speciesBilophila_wadsworthia0.0610.008120.0124
speciesLachnospiraceae_bacterium_6_1_63FAA0.060.00980.015
speciesMegasphaera_unclassified0.0590.01050.016
speciesLactobacillus_acidophilus-0.0580.0120.0182
speciesLachnospiraceae_bacterium_1_1_57FAA-0.0580.01220.0185
classGammaproteobacteria0.0580.01230.0185
speciesPeptostreptococcus_anaerobius-0.0580.01270.0191
genusRoseburia0.0550.01730.0259
genusEnterobacter0.0540.01880.0281
classDeltaproteobacteria0.0540.020.0296
orderDesulfovibrionales0.0540.020.0296
familyDesulfovibrionaceae0.0540.020.0296
speciesLachnospiraceae_bacterium_9_1_43BFAA0.0530.02220.0327
speciesEnterobacter_cloacae0.0520.02330.0343
genusButyricimonas0.0520.02420.0354
speciesButyricimonas_synergistica0.0520.02420.0354
speciesStreptococcus_infantarius0.0510.02640.0385
speciesBacteroides_intestinalis0.050.03140.0456
speciesBacteroides_clarus0.050.03160.0458
speciesAnaerostipes_unclassified0.050.03190.046
speciesDialister_succinatiphilus-0.0490.03410.0491
speciesAlistipes_indistinctus-0.0480.0360.0516
speciesLactobacillus_reuteri-0.0480.03640.0521
speciesDesulfovibrio_piger-0.0480.03920.0559
genusPeptoniphilus-0.0470.0410.0583
speciesBacteroides_sp_3_1_190.0470.04410.0625
speciesDesulfovibrio_desulfuricans-0.0460.04810.068
speciesOscillibacter_sp_KLE_17450.0450.05430.0765
speciesEnterobacter_aerogenes0.0440.05710.0802
speciesLachnospiraceae_bacterium_2_1_58FAA0.0440.05830.0817
speciesBacteroides_oleiciplenus0.0440.05850.0817
speciesClostridium_sp_KLE_1755-0.0440.05870.0817
speciesCitrobacter_freundii0.0440.05950.0826
speciesLactobacillus_crispatus-0.0440.05990.0829
speciesEscherichia_unclassified-0.0430.06150.0849
speciesHaemophilus_sputorum0.0430.06520.0897
genusClostridiaceae_noname0.0410.07330.1
speciesClostridiaceae_bacterium_JC1180.0410.07330.1
genusPyramidobacter0.0410.07430.101
speciesPyramidobacter_piscolens0.0410.07430.101
speciesOscillibacter_sp_KLE_17280.0410.07530.102
genusParaprevotella0.0410.07650.103
speciesAnaerotruncus_colihominis-0.040.08010.108
speciesClostridium_sp_ATCC_BAA_4420.040.08520.115
speciesParaprevotella_unclassified0.040.08640.116
speciesStreptococcus_lutetiensis0.0390.08930.119
speciesLachnospiraceae_bacterium_5_1_57FAA-0.0390.09360.125
speciesLachnospiraceae_bacterium_8_1_57FAA-0.0380.09720.129
genusCoriobacteriaceae_noname-0.0380.10.133
speciesCoriobacteriaceae_bacterium_phI-0.0380.1030.136
speciesWeissella_cibaria-0.0380.1040.137
speciesErysipelotrichaceae_bacterium_5_2_54FAA-0.0380.1050.138
genusStaphylococcus-0.0370.1090.143
speciesCollinsella_intestinalis0.0360.120.157
speciesCitrobacter_unclassified0.0360.1230.16
genusLambdalikevirus-0.0360.1240.161
speciesLactobacillus_vaginalis-0.0350.1280.166
speciesKlebsiella_oxytoca-0.0340.1410.182
familyStaphylococcaceae-0.0330.1480.191
speciesLactobacillus_oris-0.0330.1560.201
speciesAlistipes_unclassified-0.0320.1620.208
speciesLactobacillus_sanfranciscensis-0.0320.1670.214
speciesBacteroides_cellulosilyticus0.0310.1740.222
speciesClostridium_ramosum-0.0310.1760.224
speciesLactococcus_garvieae-0.0310.180.228
speciesAlistipes_putredinis0.0310.1840.233
familyAcidaminococcaceae-0.0310.1850.233
speciesHaemophilus_paraphrohaemolyticus0.0310.1850.233
classEpsilonproteobacteria0.030.1890.237
orderCampylobacterales0.030.1890.237
genusCitrobacter0.030.1920.24
speciesBifidobacterium_angulatum-0.0290.210.262
speciesCoprobacillus_sp_D6-0.0290.2110.262
phylumSynergistetes0.0290.2130.262
classSynergistia0.0290.2130.262
orderSynergistales0.0290.2130.262
familySynergistaceae0.0290.2130.262
genusClostridiales_noname0.0290.2140.262
speciesLactobacillus_salivarius0.0290.2160.264
genusCoprobacillus-0.0290.2170.265
speciesParaprevotella_clara0.0290.2180.265
speciesBifidobacterium_breve-0.0280.2210.268
speciesCoprobacillus_sp_29_1-0.0280.2260.274
speciesLeuconostoc_lactis-0.0280.2340.282
speciesParabacteroides_sp_D13-0.0270.2410.29
speciesEubacterium_sp_3_1_31-0.0260.260.312
speciesAcidaminococcus_intestini0.0260.2680.321
speciesEnterobacteria_phage_HK5440.0250.2720.325
speciesBacteroides_sp_4_3_47FAA0.0240.290.346
genusPhascolarctobacterium-0.0240.2970.352
speciesPhascolarctobacterium_succinatutens-0.0240.2970.352
speciesClostridium_perfringens0.0240.3020.357
genusSlackia-0.0240.3080.363
speciesEubacterium_dolichum0.0230.3170.373
genusCampylobacter0.0230.3190.375
genusAcidaminococcus-0.0230.3290.385
genusCoprobacter-0.0220.3320.387
speciesCoprobacter_fastidiosus-0.0220.3320.387
speciesAlistipes_finegoldii-0.0220.3390.394
speciesClostridium_asparagiforme0.0220.3440.399
familyClostridiales_noname0.0210.3650.422
genusWeissella-0.020.3910.451
speciesRoseburia_intestinalis0.020.3940.454
familyCampylobacteraceae0.0190.40.458
genusProteus-0.0190.40.458
speciesOdoribacter_unclassified-0.0190.4010.458
speciesLactobacillus_mucosae0.0180.4260.486
speciesClostridium_hathewayi-0.0180.430.489
speciesBacteroides_eggerthii0.0180.4330.491
orderEnterobacteriales0.0170.4540.513
familyEnterobacteriaceae0.0170.4540.513
speciesLactococcus_phage_bIL670.0170.4560.514
speciesFusobacterium_nucleatum0.0170.4680.526
orderAeromonadales0.0160.4810.539
speciesAlistipes_shahii0.0160.4930.551
speciesAlistipes_sp_HGB5-0.0160.4940.551
speciesStreptococcus_phage_Sfi21-0.0150.5190.578
speciesEubacterium_eligens-0.0150.5260.584
genusTunalikevirus-0.0150.5290.586
speciesErysipelotrichaceae_bacterium_3_1_53-0.0140.5330.589
speciesMitsuokella_multacida-0.0140.5410.597
speciesBacteroides_fluxus0.0130.5880.647
familyOscillospiraceae0.0120.6030.66
genusOscillibacter0.0120.6030.66
speciesLactococcus_phage_936_sensu_lato-0.0120.6180.675
speciesKlebsiella_phage_KP36-0.0110.6270.683
familyPodoviridae0.0110.6280.683
speciesBifidobacterium_pseudocatenulatum0.0110.6370.691
speciesPrevotella_bivia0.0110.6470.7
speciesMegasphaera_elsdenii-0.010.6690.723
speciesCollinsella_unclassified-0.010.6720.724
genusAcidaminococcaceae_unclassified-0.010.680.729
genusButyricicoccus-0.010.6810.729
speciesButyricicoccus_pullicaecorum-0.010.6810.729
speciesKlebsiella_sp_MS_92_3-0.0090.6870.734
familyViruses_noname-0.0090.7090.754
genusViruses_noname-0.0090.7090.754
speciesCoprobacillus_unclassified-0.0090.7130.756
speciesKlebsiella_unclassified-0.0080.7220.764
genusMorganella0.0080.7250.764
speciesMorganella_morganii0.0080.7250.764
speciesAcidaminococcus_unclassified0.0080.7290.766
genusSuccinatimonas0.0080.7420.777
speciesSuccinatimonas_hippei0.0080.7420.777
genusMyoviridae_noname-0.0060.7930.828
speciesProteus_mirabilis-0.0060.7960.829
speciesBacteroides_salanitronis-0.0060.7990.831
familyMyoviridae0.0060.8080.838
speciesHoldemania_sp_AP20.0050.8430.873
speciesBacteroides_sp_1_1_60.0040.8590.887
speciesParabacteroides_sp_20_3-0.0040.8760.903
familySuccinivibrionaceae0.0030.8910.916
speciesWeissella_confusa-0.0030.9120.936
familyRikenellaceae-0.0020.9260.946
genusAlistipes-0.0020.9260.946
genusEscherichia-0.0020.9380.956
speciesEscherichia_coli0.0020.9470.961
genusPantoea-0.0010.9510.961
speciesPantoea_unclassified-0.0010.9510.961
speciesLachnospiraceae_bacterium_1_4_56FAA-0.0010.9510.961
speciesBacteroides_barnesiae0.0010.9670.975
speciesSlackia_piriformis-0.0010.9720.978
speciesClostridium_clostridioforme-0.0010.9740.978
speciesOscillibacter_unclassified0.00.9860.988
speciesLactobacillus_ruminis0.00.9880.988
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Association of query gene abundance with clinical phenotypes:

Boxplots:


Statistics:

pheno country case_n ctrl_n case_mean ctrl_mean pvalue rank percentile
Type II diabetesChina1831850.2006115481710.2428110840820.0033225321651525038.27192
Crohns diseaseSpain17660.2276286885760.1649244168410.0105951352547819727.2552
Colorectal cancerAustria64350.07038159529810.04163424443320.018615671297812354.17851
ObesityDenmark1691230.1693360068640.1320700279280.022426791675336711.0717
Rheumatoid arthritisChina127980.144748275590.1630506357090.2478294953081037334.5917
Type II diabetesDenmark752770.1439212698930.1546144405630.2597094054861461747.9136
Type II diabetesSweden53920.06610031621540.06080013000960.5824148299811827361.8794
Liver cirrhosisChina1201140.2514294244390.2511731320070.7777279776072750692.3981
Ulcerative colitisSpain78660.1526736605810.1649244168410.9226483153872862694.4316
Click on arrows to sort table data. Shift+click to sort by multiple columns.

Citation:

Nayfach S, Fischbach MA, Pollard KS. MetaQuery: a web server for rapid annotation and quantitative analysis of specific genes in the human gut microbiome. Bioinformatics 2015;31(14). doi:10.1093/bioinformatics/btv382