MetaQuery: quantitative analysis of the human gut microbiome

Results

Estimated gene abundances and results from statistical analyses

Job details:

Submission date: 2021-01-24 09:54:12 PST
Job id & description: 2379, guanosine6
Query type: protein
Count queries & homologs: 100, 101
Min % identity & max e-value: 100%, 1e-5
Min % query & target coverage: 95%, 95%

Click here to download results

Table of contents:


Gut microbiome genes homologous to your query gene:

query_id target_id status kegg eggnog phylum genus query_cov target_cov percent_identity
MH0430_GL01141463319343CompleteK03783COG0005Bacteroidetesunknown100.0100.0100.0
SZEY-38A_GL00072573325417CompleteK03783COG0005Bacteroidetesunknown100.0100.0100.0
MH0157_GL00912773346909CompleteK03783COG0005unknownunknown100.0100.0100.0
MH0443_GL00977473319715CompleteK03783COG0005Bacteroidetesunknown100.0100.0100.0
MH0448_GL01797463319867CompleteK03783COG0005Bacteroidetesunknown100.0100.0100.0
159571453-stool1_revised3327123CompleteK03783COG0005Bacteroidetesunknown100.0100.0100.0
V1.UC17-0_GL00098733323376CompleteK03783COG0005Bacteroidetesunknown100.0100.0100.0
MH0011_GL00030243328661CompleteK03783COG0005unknownunknown100.0100.0100.0
MH0053_GL00612203329224CompleteK03783COG0005unknownunknown100.0100.0100.0
MH0109_GL00136093330013CompleteK03783COG0005unknownunknown100.0100.0100.0
MH0415_GL00584213319043CompleteK03783COG0005unknownunknown100.0100.0100.0
NOF010_GL00015133324853CompleteK03783COG0005Bacteroidetesunknown100.0100.0100.0
T2D-135A_GL00905113325785CompleteK03783COG0005BacteroidetesBacteroides100.0100.0100.0
T2D-73A_GL00461813326350CompleteK03783COG0005BacteroidetesBacteroides100.0100.0100.0
158742018-stool1_revised3342986CompleteK03783COG0005Bacteroidetesunknown100.0100.0100.0
764143897-stool1_revised3327671CompleteK03783COG0005unknownunknown100.0100.0100.0
DLF010_GL00061743340446CompleteK03783COG0005unknownunknown100.0100.0100.0
MH0006_GL01605283328576CompleteK03783COG0005BacteroidetesAlistipes100.0100.0100.0
MH0192_GL01722443331350CompleteK03783COG0005unknownunknown100.0100.0100.0
MH0196_GL01742183331419CompleteK03783COG0005BacteroidetesAlistipes100.0100.0100.0
MH0220_GL01548043331769CompleteK03783COG0005Bacteroidetesunknown100.0100.0100.0
MH0321_GL00251223317215CompleteK03783COG0005BacteroidetesBacteroides100.0100.0100.0
MH0328_GL01425703317302CompleteK03783COG0005Bacteroidetesunknown100.0100.0100.0
MH0333_GL00323013317397CompleteK03783COG0005BacteroidetesBacteroides100.0100.0100.0
MH0359_GL00473143317874CompleteK03783COG0005BacteroidetesAlistipes100.0100.0100.0
MH0381_GL00385263318361CompleteK03783COG0005BacteroidetesBacteroides100.0100.0100.0
MH0435_GL00949443319522CompleteK03783COG0005Bacteroidetesunknown100.0100.0100.0
NLF006_GL00070873324678CompleteK03783COG0005BacteroidetesBacteroides100.0100.0100.0
NOF013_GL00322823324875CompleteK03783COG0005BacteroidetesBacteroides100.0100.0100.0
NOF013_GL00464943324877CompleteK03783COG0005Bacteroidetesunknown100.0100.0100.0
O2.UC24-1_GL01767833320659CompleteK03783COG0005Bacteroidetesunknown100.0100.0100.0
T2D-113A_GL00244143325631CompleteK03783COG0005BacteroidetesBacteroides100.0100.0100.0
T2D-133A_GL00474773325751CompleteK03783COG0005BacteroidetesBacteroides100.0100.0100.0
T2D-135A_GL01145983325794CompleteK03783COG0005BacteroidetesBacteroides100.0100.0100.0
T2D-22A_GL01199583342105CompleteK03783COG0005BacteroidetesAlistipes100.0100.0100.0
T2D-2A_GL00673013358613Lack 5'-endK03783COG0005BacteroidetesPrevotella100.0100.0100.0
V1.CD38-0_GL01252663322126CompleteK03783COG0005BacteroidetesBacteroides100.0100.0100.0
160400887-stool1_revised3359836CompleteK03783COG0005unknownunknown100.0100.0100.0
457424.BFAG_044833328180CompleteK03783COG0005BacteroidetesBacteroides100.0100.0100.0
V1.UC58-4_GL01212263356706Lack 3'-endK03783COG0005unknownunknown100.0100.0100.0
765094712-stool1_revised3327856CompleteK03783COG0005BacteroidetesBacteroides100.0100.0100.0
MH0006_GL01840393328589CompleteK03783COG0005BacteroidetesAlistipes100.0100.0100.0
MH0043_GL00536723361745CompleteK03783COG0005unknownunknown100.0100.0100.0
MH0066_GL00672393345418CompleteK03783COG0005unknownunknown100.0100.0100.0
MH0124_GL01391253330212CompleteK03783COG0005unknownunknown100.0100.0100.0
MH0251_GL01652653365015CompleteK03783COG0005unknownunknown100.0100.0100.0
MH0272_GL00970833348795CompleteK03783COG0005unknownunknown100.0100.0100.0
MH0316_GL00134793333188CompleteK03783COG0005BacteroidetesAlistipes100.0100.0100.0
N038A_GL01086983341357CompleteK03783COG0005BacteroidetesAlistipes100.0100.0100.0
V1.CD19-0_GL01369483370881CompleteK03783COG0005unknownunknown100.0100.0100.0
V1.UC41-0_GL00266063323788CompleteK03783COG0005unknownunknown100.0100.0100.0
MH0003_GL00732323344451Lack 5'-endK03783COG0005BacteroidetesAlistipes100.0100.0100.0
MH0055_GL00294163345291CompleteK03783COG0005unknownunknown100.0100.0100.0
MH0439_GL02127343368694CompleteK03783COG0005unknownunknown100.0100.0100.0
210007.SMU_12293327987CompleteK03783COG0005FirmicutesStreptococcus100.0100.0100.0
MH0021_GL00068483361522CompleteK03783COG0005unknownunknown100.0100.0100.0
MH0028_GL00670893361599CompleteK03783COG0005unknownunknown100.0100.0100.0
MH0369_GL00820353366964CompleteK03783COG0005unknownunknown100.0100.0100.0
V1.FI11_GL00148993355180CompleteK03783COG0005unknownunknown100.0100.0100.0
1000570.HMPREF9966_11063328101CompleteK03783COG0005FirmicutesStreptococcus100.0100.0100.0
435842.HMPREF0848_005983328139CompleteK03783COG0005FirmicutesStreptococcus100.0100.0100.0
MH0147_GL01157853346754CompleteK03783COG0005unknownunknown100.0100.0100.0
MH0431_GL00511353319362CompleteK03783COG0005unknownunknown100.0100.0100.0
MH0434_GL00893843351895CompleteK03783COG0005unknownunknown100.0100.0100.0
889206.HMPREF9425_09133328375CompleteK03783COG0005FirmicutesStreptococcus100.0100.0100.0
MH0130_GL00005393362926CompleteK03783COG0005unknownunknown100.0100.0100.0
MH0275_GL00646143365474CompleteK03783COG0005unknownunknown100.0100.0100.0
MH0452_GL01236173368955CompleteK03783COG0005unknownunknown100.0100.0100.0
V1.CD38-0_GL00355653322120CompleteK03783COG0005FirmicutesStreptococcus100.0100.0100.0
864570.HMPREF9189_09693328345CompleteK03783COG0005FirmicutesStreptococcus100.0100.0100.0
871237.SIN_15053328361CompleteK03783COG0005FirmicutesStreptococcus100.0100.0100.0
MH0074_GL00485003329451CompleteK03783COG0005unknownunknown100.0100.0100.0
MH0077_GL00382953362094CompleteK03783COG0005unknownunknown100.0100.0100.0
MH0341_GL01186253317567CompleteK03783COG0005FirmicutesStreptococcus100.0100.0100.0
888833.HMPREF9961_17053328374CompleteK03783COG0005FirmicutesStreptococcus100.0100.0100.0
V1.CD20-0_GL00862433404370CompleteK03783COG0005unknownunknown100.0100.0100.0
V1.UC38-4_GL00890983323706CompleteK03783COG0005FirmicutesStreptococcus100.0100.0100.0
467705.SGO_12633328041CompleteK03783COG0005FirmicutesStreptococcus100.0100.0100.0
MH0021_GL00614323344923CompleteK03783COG0005unknownunknown100.0100.0100.0
MH0383_GL01409203318441CompleteK03783COG0005FirmicutesStreptococcus100.0100.0100.0
MH0415_GL00705593351408Lack 5'-endK03783COG0005unknownunknown100.0100.0100.0
V1.CD46-0_GL01186923475039Lack 5'-endK03783COG0005unknownunknown100.0100.0100.0
V1.UC33-0_GL00803523339808Lack 5'-endK03783COG0005FirmicutesStreptococcus100.0100.0100.0
V1.UC31-4_GL01567623339792Lack 5'-endK03783COG0005FirmicutesStreptococcus100.0100.0100.0
MH0425_GL01088843526568Lack 5'-endK03783COG0005FirmicutesFaecalibacterium100.0100.0100.0
V1.UC17-2_GL00803433372584CompleteK03783COG0005Firmicutesunknown100.0100.0100.0
O2.UC48-1_GL00100613456319Lack 5'-endK03783COG0005unknownunknown100.0100.0100.0
V1.FI17_GL00533153440459Lack 5'-endK03783COG0005unknownunknown100.0100.0100.0
MH0398_GL00974713563400CompleteK03783COG0005Bacteroidetesunknown100.0100.0100.0
T2D-123A_GL01366923534048Lack 5'-endK03783COG0005unknownunknown100.0100.0100.0
MH0052_GL00377803538111CompleteK03783COG0005unknownunknown100.0100.0100.0
MH0047_GL00295893556771CompleteK03783COG0005Bacteroidetesunknown100.0100.0100.0
MH0181_GL00294773558930CompleteK03783COG0005Bacteroidetesunknown100.0100.0100.0
MH0047_GL00034233556748CompleteK03783COG0005Bacteroidetesunknown100.0100.0100.0
MH0055_GL00134743556882CompleteK03783COG0005Bacteroidetesunknown100.0100.0100.0
MH0411_GL01282663545067Lack 5'-endK03783COG0005unknownunknown100.0100.0100.0
T2D-62A_GL00604953553338Lack 5'-endK03783COG0005unknownunknown100.0100.0100.0
MH0055_GL00134743571181CompleteK03783COG0005Bacteroidetesunknown99.2299.22100.0
V1.UC26-4_GL01596473550296Lack 3'-endK03783COG0005FirmicutesPeptoniphilus100.0100.0100.0
O2.UC24-2_GL00117053565622CompleteK03783COG0005unknownunknown100.0100.0100.0
V1.FI14_GL00415063568025Lack 5'-endK03783COG0005unknownunknown100.0100.0100.0
Click on arrows to sort table data. Shift+click to sort by multiple columns.

The abundance of your query across gut microbiome samples:




The prevalence of your query across gut microbiome samples:




Taxonomic groups correlated with your query gene:

tax_level tax_name spearman_rho pvalue qvalue
familyRikenellaceae0.591.61e-1753.8e-173
genusAlistipes0.591.61e-1753.8e-173
speciesAlistipes_putredinis0.4694.04e-1036.36e-101
speciesAlistipes_shahii0.3751.19e-631.4e-61
genusOdoribacter0.3661.7e-601.6e-58
speciesOdoribacter_splanchnicus0.3627.9e-596.21e-57
speciesAlistipes_finegoldii0.3551.62e-561.09e-54
familyPorphyromonadaceae0.3421.97e-521.16e-50
familyBacteroidales_noname0.3138.06e-443.46e-42
genusBacteroidales_noname0.3138.06e-443.46e-42
speciesBacteroidales_bacterium_ph80.3138.06e-443.46e-42
speciesAlistipes_onderdonkii0.315.12e-432.01e-41
phylumBacteroidetes0.2981.04e-393.27e-38
classBacteroidia0.2981.04e-393.27e-38
orderBacteroidales0.2981.04e-393.27e-38
speciesOscillibacter_unclassified0.283.81e-351.12e-33
familyOscillospiraceae0.2781.58e-344.14e-33
genusOscillibacter0.2781.58e-344.14e-33
genusParabacteroides0.2732.64e-336.56e-32
genusBlautia-0.2594.38e-301.03e-28
speciesAlistipes_senegalensis0.2512.98e-286.7e-27
speciesAlistipes_indistinctus0.2381.87e-254.01e-24
familyLachnospiraceae-0.2291.28e-232.63e-22
speciesAlistipes_sp_AP110.2273.48e-236.84e-22
genusPeptostreptococcaceae_noname-0.2222.3e-224.34e-21
classDeltaproteobacteria0.2214.37e-227.37e-21
orderDesulfovibrionales0.2214.37e-227.37e-21
familyDesulfovibrionaceae0.2214.37e-227.37e-21
familyPeptostreptococcaceae-0.227.58e-221.23e-20
speciesRuminococcus_gnavus-0.2181.32e-212.08e-20
speciesParabacteroides_merdae0.2162.86e-214.35e-20
genusAnaerostipes-0.2148.28e-211.22e-19
phylumFirmicutes-0.2122.18e-203.12e-19
classBetaproteobacteria0.2096.57e-208.91e-19
orderBurkholderiales0.2096.61e-208.91e-19
classClostridia-0.2037.11e-199.07e-18
orderClostridiales-0.2037.11e-199.07e-18
familySutterellaceae0.1993.43e-184.26e-17
speciesBacteroides_cellulosilyticus0.1918.64e-171.05e-15
speciesCoprobacillus_unclassified-0.191.1e-161.3e-15
genusButyricimonas0.1891.54e-161.73e-15
speciesButyricimonas_synergistica0.1891.54e-161.73e-15
genusBarnesiella0.1874.24e-164.55e-15
speciesBarnesiella_intestinihominis0.1874.24e-164.55e-15
genusBilophila0.1841.19e-151.25e-14
speciesBilophila_unclassified0.1822.12e-152.18e-14
genusDesulfovibrio0.1822.45e-152.46e-14
speciesLachnospiraceae_bacterium_5_1_63FAA-0.1822.57e-152.53e-14
genusCoprobacillus-0.1813.16e-153.04e-14
classBacilli-0.1781.02e-149.63e-14
phylumActinobacteria-0.1761.53e-141.39e-13
classActinobacteria-0.1761.53e-141.39e-13
speciesClostridium_ramosum-0.1752.53e-142.25e-13
orderLactobacillales-0.1752.59e-142.26e-13
genusSolobacterium-0.1691.71e-131.44e-12
speciesSolobacterium_moorei-0.1691.71e-131.44e-12
orderBifidobacteriales-0.1692.03e-131.65e-12
familyBifidobacteriaceae-0.1692.03e-131.65e-12
genusBifidobacterium-0.1692.17e-131.74e-12
speciesLachnospiraceae_bacterium_7_1_58FAA0.1665.09e-134e-12
speciesClostridium_bartlettii-0.1641.07e-128.28e-12
speciesPrevotella_stercorea0.1631.25e-129.52e-12
speciesBacteroides_uniformis0.162.98e-122.23e-11
genusAnaerotruncus0.163.18e-122.35e-11
familyActinomycetaceae-0.1578.29e-126.02e-11
genusActinomyces-0.1579.52e-126.81e-11
speciesAnaerotruncus_colihominis0.1561.22e-118.59e-11
genusEggerthella-0.1542.11e-111.46e-10
speciesEggerthella_lenta-0.1542.19e-111.5e-10
genusDorea-0.1532.62e-111.77e-10
speciesBilophila_wadsworthia0.1532.91e-111.93e-10
speciesBacteroides_caccae0.1523.6e-112.36e-10
speciesStreptococcus_sanguinis-0.1523.86e-112.5e-10
speciesDesulfovibrio_desulfuricans0.1524.11e-112.62e-10
familyStreptococcaceae-0.1514.68e-112.95e-10
genusOxalobacter0.1515.16e-113.16e-10
speciesOxalobacter_formigenes0.1515.16e-113.16e-10
familyOxalobacteraceae0.1515.99e-113.62e-10
speciesBifidobacterium_longum-0.157.4e-114.42e-10
genusStreptococcus-0.1498.39e-114.95e-10
speciesAnaerostipes_hadrus-0.1481.27e-107.4e-10
speciesEggerthella_unclassified-0.1481.45e-108.35e-10
genusCoprobacter0.1471.94e-101.09e-09
speciesCoprobacter_fastidiosus0.1471.94e-101.09e-09
familyPrevotellaceae0.1435.6e-103.11e-09
speciesLachnospiraceae_bacterium_9_1_43BFAA-0.1418.17e-104.48e-09
speciesPeptostreptococcaceae_noname_unclassified-0.1391.64e-098.9e-09
speciesParabacteroides_distasonis0.1381.99e-091.07e-08
speciesBacteroides_intestinalis0.1382.02e-091.07e-08
speciesRuminococcus_sp_5_1_39BFAA-0.1372.37e-091.24e-08
speciesRoseburia_hominis0.1363.47e-091.8e-08
speciesFusobacterium_ulcerans-0.1354.8e-092.46e-08
familyEnterococcaceae-0.1345.64e-092.86e-08
speciesBacteroides_nordii0.1338.02e-094.03e-08
speciesAnaerostipes_unclassified-0.1329.94e-094.94e-08
speciesStreptococcus_australis-0.1321.06e-085.21e-08
genusEnterococcus-0.1311.17e-085.69e-08
orderActinomycetales-0.1311.24e-085.97e-08
orderEnterobacteriales-0.1311.43e-086.75e-08
familyEnterobacteriaceae-0.1311.43e-086.75e-08
genusPseudoflavonifractor0.1291.91e-088.84e-08
speciesPseudoflavonifractor_capillosus0.1291.91e-088.84e-08
genusParasutterella0.1282.74e-081.24e-07
speciesParasutterella_excrementihominis0.1282.74e-081.24e-07
speciesStreptococcus_salivarius-0.1273.28e-081.47e-07
orderBacillales-0.1273.44e-081.53e-07
speciesRuminococcus_torques-0.1273.81e-081.68e-07
speciesRuminococcus_obeum-0.1273.89e-081.7e-07
familyFusobacteriaceae-0.1264.33e-081.88e-07
orderCoriobacteriales-0.1255.35e-082.27e-07
familyCoriobacteriaceae-0.1255.35e-082.27e-07
speciesEscherichia_coli-0.1255.59e-082.36e-07
genusSutterellaceae_unclassified0.1255.65e-082.36e-07
genusEscherichia-0.1256.41e-082.65e-07
familyBacillales_noname-0.1247.59e-083.09e-07
genusGemella-0.1247.59e-083.09e-07
genusFusobacterium-0.1247.81e-083.15e-07
phylumFusobacteria-0.1221.13e-074.44e-07
classFusobacteriia-0.1221.13e-074.44e-07
orderFusobacteriales-0.1221.13e-074.44e-07
speciesEubacterium_hallii-0.121.79e-076.96e-07
speciesBacteroides_faecis0.121.8e-076.96e-07
speciesLachnospiraceae_bacterium_2_1_58FAA-0.121.86e-077.12e-07
speciesParabacteroides_goldsteinii0.121.87e-077.12e-07
speciesErysipelotrichaceae_bacterium_2_2_44A-0.1192.62e-079.89e-07
speciesClostridium_nexile-0.1192.69e-071.01e-06
classGammaproteobacteria-0.1183.11e-071.16e-06
speciesBacteroides_thetaiotaomicron0.1183.36e-071.24e-06
speciesLachnospiraceae_bacterium_1_4_56FAA-0.1156.54e-072.39e-06
speciesDorea_formicigenerans-0.1138.75e-073.18e-06
speciesEubacterium_siraeum0.1131.04e-063.75e-06
genusRuminococcaceae_noname0.1121.11e-063.94e-06
speciesRuminococcaceae_bacterium_D160.1121.11e-063.94e-06
speciesClostridium_asparagiforme0.111.79e-066.31e-06
speciesLachnospiraceae_bacterium_3_1_46FAA0.1092.27e-067.94e-06
speciesLachnospiraceae_bacterium_6_1_63FAA-0.1092.48e-068.61e-06
speciesAnaerotruncus_unclassified0.1082.69e-069.27e-06
genusPrevotella0.1082.89e-069.88e-06
genusSubdoligranulum0.1073.68e-061.25e-05
genusRuminococcus-0.1073.84e-061.29e-05
speciesSubdoligranulum_unclassified0.1064.52e-061.51e-05
genusLachnospiraceae_noname-0.1064.8e-061.6e-05
speciesEubacterium_eligens0.1055.81e-061.92e-05
genusBurkholderiales_noname0.1046.78e-062.21e-05
speciesBurkholderiales_bacterium_1_1_470.1046.78e-062.21e-05
familyBurkholderiales_noname0.1047.2e-062.33e-05
genusHoldemania0.1021.03e-053.31e-05
speciesBacteroides_xylanisolvens0.11.45e-054.59e-05
speciesDorea_longicatena-0.11.45e-054.59e-05
speciesLachnospiraceae_bacterium_2_1_46FAA-0.0991.86e-055.85e-05
speciesStreptococcus_mitis_oralis_pneumoniae-0.0982.22e-056.94e-05
familyLactobacillaceae-0.0972.57e-057.98e-05
familyRuminococcaceae-0.0972.63e-058.11e-05
familyLeuconostocaceae-0.0963.25e-059.96e-05
speciesRuminococcus_callidus0.0954.17e-050.000127
speciesBacteroides_salyersiae0.0935.21e-050.000158
speciesBacteroides_ovatus0.0935.46e-050.000164
classErysipelotrichia-0.0935.6e-050.000165
orderErysipelotrichales-0.0935.6e-050.000165
familyErysipelotrichaceae-0.0935.6e-050.000165
phylumVerrucomicrobia0.0935.89e-050.000167
classVerrucomicrobiae0.0935.89e-050.000167
orderVerrucomicrobiales0.0935.89e-050.000167
familyVerrucomicrobiaceae0.0935.89e-050.000167
genusAkkermansia0.0935.89e-050.000167
speciesAkkermansia_muciniphila0.0935.89e-050.000167
speciesParabacteroides_johnsonii0.0935.92e-050.000167
speciesDesulfovibrio_piger0.0936.13e-050.000172
genusLactobacillus-0.0917.64e-050.000213
speciesBlautia_producta-0.090.0001010.00028
speciesClostridium_leptum0.0890.0001090.000301
speciesAlistipes_sp_HGB50.0890.0001170.000321
speciesParaprevotella_xylaniphila0.0880.0001370.000374
speciesHoldemania_filiformis0.0880.000140.00038
speciesEnterococcus_faecium-0.0880.0001410.00038
genusClostridiaceae_noname0.0870.0001610.000429
speciesClostridiaceae_bacterium_JC1180.0870.0001610.000429
speciesStreptococcus_parasanguinis-0.0860.0001820.000483
familyBacteroidaceae0.0850.0002380.000624
genusBacteroides0.0850.0002380.000624
genusLeuconostoc-0.0850.0002470.000644
genusSutterella0.0840.0002750.000713
speciesBacteroides_finegoldii0.0830.0003280.000846
speciesCoprococcus_catus-0.0820.0004030.00103
speciesClostridium_bolteae-0.0810.0004730.00121
speciesOscillibacter_sp_KLE_17450.080.0005080.00129
genusErysipelotrichaceae_noname-0.080.0005320.00134
speciesClostridium_citroniae0.080.000550.00138
speciesBifidobacterium_animalis-0.0780.0007820.00195
speciesBifidobacterium_breve-0.0770.0009180.00228
speciesSubdoligranulum_sp_4_3_54A2FAA0.0770.0009270.00229
speciesKlebsiella_oxytoca-0.0760.0009910.00244
speciesSutterella_wadsworthensis0.0760.001020.00249
speciesFusobacterium_varium-0.0760.001070.0026
genusPeptostreptococcus-0.0750.001130.00274
speciesEnterococcus_faecalis-0.0750.001190.00287
speciesPropionibacterium_freudenreichii-0.0730.001490.00357
speciesBacteroides_dorei0.0730.001650.00393
familyClostridiaceae-0.0730.001660.00394
genusClostridium-0.0730.00170.00401
speciesBacteroides_stercoris0.0720.001780.00418
speciesBacteroides_oleiciplenus0.0720.001830.00428
genusPantoea-0.0720.001910.00442
speciesPantoea_unclassified-0.0720.001910.00442
genusSuccinatimonas0.070.002410.00551
speciesSuccinatimonas_hippei0.070.002410.00551
speciesPrevotella_copri0.070.002420.00551
speciesCoprococcus_comes-0.070.002430.00551
speciesAlistipes_unclassified-0.070.00250.00565
speciesTuricibacter_sanguinis-0.070.002550.00573
genusPropionibacterium-0.0690.002770.0062
genusKlebsiella-0.0690.002810.00626
genusOlsenella-0.0690.002950.00654
familyClostridiales_Family_XI_Incertae_Sedis-0.0680.003040.0067
speciesEggerthella_sp_1_3_56FAA-0.0680.003050.0067
speciesLactobacillus_rhamnosus-0.0680.003380.00739
speciesLactobacillus_delbrueckii-0.0670.003510.00763
speciesLactobacillus_sanfranciscensis-0.0670.003640.00788
speciesMegamonas_funiformis0.0660.004190.00903
speciesGemella_morbillorum-0.0660.004410.00946
familySuccinivibrionaceae0.0650.004610.00985
genusAcidaminococcaceae_unclassified0.0650.00510.0108
familyClostridiales_noname0.0640.005320.0113
speciesParaprevotella_unclassified0.0640.00540.0114
genusParaprevotella0.0640.005570.0117
speciesParaprevotella_clara0.0630.006210.013
speciesHoldemania_unclassified0.0630.006720.014
speciesStreptococcus_lutetiensis-0.0620.006980.0144
genusFlavonifractor0.0610.00850.0174
speciesFlavonifractor_plautii0.0610.00850.0174
speciesMegasphaera_micronuciformis-0.060.009850.0201
speciesLactococcus_lactis-0.0590.01060.0215
speciesStreptococcus_thermophilus-0.0590.01060.0215
familyAcidaminococcaceae0.0590.01070.0216
genusPyramidobacter0.0590.01110.0222
speciesPyramidobacter_piscolens0.0590.01110.0222
speciesRuminococcus_sp_JC304-0.0580.01210.0241
speciesVeillonella_parvula-0.0570.01350.0268
speciesLactobacillus_acidophilus-0.0570.01450.0286
genusCoprococcus-0.0560.01630.0321
speciesBacteroides_eggerthii0.0550.01690.0331
speciesOlsenella_unclassified-0.0550.0170.0332
speciesClostridium_clostridioforme-0.0550.01810.0352
speciesKlebsiella_sp_MS_92_3-0.0540.01850.0358
speciesFusobacterium_nucleatum-0.0540.01970.038
speciesLachnospiraceae_bacterium_3_1_57FAA_CT10.0540.02010.0386
speciesKlebsiella_pneumoniae-0.0540.02050.039
speciesStreptococcus_anginosus-0.0540.02060.039
speciesBacteroides_clarus0.0540.02060.039
speciesOscillibacter_sp_KLE_17280.0530.02150.0406
speciesCollinsella_tanakaei0.0530.0220.0411
phylumSynergistetes0.0530.02220.0411
classSynergistia0.0530.02220.0411
orderSynergistales0.0530.02220.0411
familySynergistaceae0.0530.02220.0411
genusVeillonella-0.0520.02330.043
genusLactococcus-0.0510.02630.0483
speciesBifidobacterium_pseudocatenulatum-0.0510.02680.0488
phylumViruses_noname-0.0510.02690.0488
classViruses_noname-0.0510.02690.0488
speciesLactobacillus_amylovorus-0.0510.02820.051
speciesLactococcus_phage_P680-0.0510.02880.0519
genusPorphyromonas0.050.02930.0525
speciesCollinsella_aerofaciens-0.050.02940.0525
genusSiphoviridae_noname-0.050.02950.0525
speciesPeptostreptococcus_stomatis-0.050.030.0532
speciesPorphyromonas_asaccharolytica0.050.03230.0571
speciesLactobacillus_ruminis0.0490.0330.0581
orderViruses_noname-0.0490.03350.0588
speciesCollinsella_unclassified0.0490.03430.06
speciesBacteroides_massiliensis0.0480.03640.0634
speciesHoldemania_sp_AP20.0480.03980.0691
speciesLachnospiraceae_bacterium_5_1_57FAA-0.0470.04150.0718
speciesLactobacillus_vaginalis0.0460.0450.0775
classEpsilonproteobacteria0.0460.04540.0776
orderCampylobacterales0.0460.04540.0776
genusTuricibacter-0.0460.04730.0806
speciesEubacterium_sp_3_1_310.0460.0490.0832
speciesBacteroides_sp_1_1_60.0440.05670.0959
genusCollinsella-0.0440.05750.0969
genusC2likevirus0.0440.05790.0973
orderAeromonadales0.0440.05830.0976
speciesEscherichia_unclassified-0.0430.06040.101
speciesErysipelotrichaceae_bacterium_21_3-0.0430.06080.101
speciesStreptococcus_pasteurianus-0.0430.0630.104
speciesCoprococcus_sp_ART55_10.0430.0650.107
genusWeissella-0.0430.06510.107
genusProteus-0.0430.06580.108
genusButyrivibrio0.0430.0660.108
familyPropionibacteriaceae-0.0420.06690.109
speciesBifidobacterium_bifidum-0.0420.07150.116
speciesC2likevirus_unclassified0.0410.07330.118
familyEubacteriaceae-0.0410.07430.12
speciesMegamonas_hypermegale0.0410.07480.12
genusEubacterium-0.0410.07560.121
speciesEubacterium_dolichum-0.0410.07810.125
speciesVeillonella_unclassified-0.040.08140.129
speciesCitrobacter_unclassified-0.040.08420.133
speciesLactobacillus_plantarum-0.040.08440.133
speciesMitsuokella_unclassified0.040.08750.138
speciesProteus_mirabilis-0.0390.09320.146
speciesEubacterium_limosum-0.0390.09520.149
speciesButyrivibrio_crossotus0.0380.0990.154
speciesBacteroides_sp_4_3_47FAA0.0380.1010.157
speciesBacteroides_coprocola-0.0380.1020.158
familyCampylobacteraceae0.0380.1040.16
speciesBifidobacterium_dentium-0.0370.1070.165
speciesBacteroides_salanitronis0.0370.1110.17
genusCampylobacter0.0360.1170.178
speciesBifidobacterium_catenulatum-0.0360.1170.178
speciesLactobacillus_casei_paracasei-0.0360.1180.179
genusMorganella-0.0360.1190.179
speciesMorganella_morganii-0.0360.1190.179
speciesErysipelotrichaceae_bacterium_5_2_54FAA0.0360.1220.183
speciesBifidobacterium_adolescentis-0.0360.1220.183
speciesVeillonella_dispar-0.0350.1280.191
genusCitrobacter-0.0350.1310.195
speciesWeissella_cibaria-0.0350.1340.199
genusMitsuokella0.0350.1360.201
speciesClostridium_sp_ATCC_BAA_4420.0340.1380.204
speciesTuricibacter_unclassified-0.0330.1490.219
familyViruses_noname-0.0330.1560.227
genusViruses_noname-0.0330.1560.227
speciesBacteroides_coprophilus0.0330.1560.227
speciesSutterella_parvirubra0.0330.1570.228
speciesBlautia_hydrogenotrophica-0.0320.1690.245
classNegativicutes0.0310.1780.256
orderSelenomonadales0.0310.1780.256
speciesFusobacterium_mortiferum-0.0310.1810.26
genusMegasphaera-0.0310.1870.267
speciesWeissella_confusa-0.030.190.27
speciesEubacterium_ramulus-0.030.190.27
speciesPeptostreptococcus_anaerobius-0.030.1910.271
speciesAcidaminococcus_fermentans0.030.1960.276
speciesVeillonella_atypica-0.030.1960.276
genusMethanosphaera-0.030.2010.282
speciesMethanosphaera_stadtmanae-0.030.2010.282
speciesMegamonas_unclassified0.0290.2150.3
speciesBacteroides_sp_2_1_220.0280.220.306
speciesErysipelotrichaceae_bacterium_6_1_45-0.0280.2220.308
speciesRuminococcus_bromii-0.0280.2240.31
genusMegamonas0.0280.2250.31
speciesStreptococcus_gordonii-0.0280.2250.31
familyMyoviridae-0.0280.2340.321
speciesClostridium_sp_L2_500.0270.240.328
speciesRuminococcus_lactaris0.0270.2460.336
speciesSlackia_piriformis0.0270.2490.338
genusPhascolarctobacterium0.0270.250.338
speciesPhascolarctobacterium_succinatutens0.0270.250.338
speciesEubacterium_ventriosum-0.0260.2640.356
genusPeptoniphilus-0.0260.270.363
genusCatenibacterium0.0250.2780.371
speciesCatenibacterium_mitsuokai0.0250.2780.371
speciesOdoribacter_unclassified-0.0250.2790.371
speciesCollinsella_intestinalis0.0250.280.371
speciesCitrobacter_freundii-0.0250.280.371
speciesLactobacillus_mucosae-0.0250.2830.374
speciesStreptococcus_mutans-0.0250.2880.38
orderCaudovirales-0.0240.2950.388
speciesLachnospiraceae_bacterium_1_1_57FAA0.0240.2990.392
speciesHaemophilus_sputorum-0.0240.3010.394
genusStaphylococcus-0.0240.3060.398
speciesErysipelotrichaceae_bacterium_3_1_53-0.0240.3060.398
speciesHaemophilus_paraphrohaemolyticus0.0240.3080.398
speciesMegamonas_rupellensis0.0240.3080.398
speciesDialister_invisus0.0230.3130.404
speciesLactobacillus_fermentum-0.0230.3190.41
speciesClostridium_symbiosum-0.0230.3210.412
speciesMethanobrevibacter_unclassified0.0230.3280.42
speciesBacteroides_vulgatus0.0220.3370.43
speciesLachnospiraceae_bacterium_8_1_57FAA-0.0220.3390.431
speciesBacteroides_fragilis0.0220.3460.439
genusDialister0.0220.350.441
speciesBacteroides_plebeius0.0220.350.441
speciesRothia_mucilaginosa-0.0220.3510.441
speciesLactococcus_phage_phi7-0.0220.3510.441
familyStaphylococcaceae-0.0210.3580.446
genusParvimonas-0.0210.3580.446
speciesParvimonas_unclassified-0.0210.3590.446
speciesStreptococcus_vestibularis-0.0210.3590.446
speciesBacteroides_pectinophilus0.0210.3650.452
genusRothia-0.020.3780.467
orderPseudomonadales-0.020.3920.482
genusMyoviridae_noname-0.020.3920.482
familyMicrococcaceae-0.020.3930.482
genusAggregatibacter0.0190.4210.513
speciesLactococcus_phage_jm2-0.0190.4210.513
genusClostridiales_noname0.0190.4220.513
speciesAggregatibacter_segnis0.0180.430.522
familySiphoviridae-0.0180.4320.523
familyPodoviridae0.0180.4420.534
speciesPrevotella_bivia-0.0170.460.554
speciesMethanobrevibacter_smithii-0.0170.4610.554
speciesLactobacillus_oris0.0170.4710.564
speciesEubacterium_biforme0.0170.4730.565
speciesMitsuokella_multacida0.0160.4840.577
genusAcidaminococcus0.0160.4870.579
speciesLactococcus_phage_936_sensu_lato0.0160.4930.585
speciesParabacteroides_unclassified-0.0150.5070.6
genusActinobacillus-0.0150.5140.605
speciesActinobacillus_unclassified-0.0150.5140.605
speciesDialister_succinatiphilus-0.0150.5150.605
speciesLactococcus_phage_bIL67-0.0140.5380.63
speciesParabacteroides_sp_20_30.0140.5450.637
speciesKlebsiella_unclassified-0.0140.5480.639
speciesCoriobacteriaceae_bacterium_phI0.0140.5510.641
orderPasteurellales0.0140.5550.642
familyPasteurellaceae0.0140.5550.642
speciesButyrivibrio_unclassified0.0130.5770.666
speciesRoseburia_inulinivorans0.0130.580.668
speciesDorea_unclassified0.0120.5920.68
speciesEubacterium_rectale0.0120.6030.688
genusHaemophilus0.0120.6040.688
genusButyricicoccus0.0120.6050.688
speciesButyricicoccus_pullicaecorum0.0120.6050.688
speciesAcidaminococcus_unclassified0.0120.6070.689
speciesRoseburia_intestinalis0.0110.6190.701
speciesBacteroides_barnesiae0.0110.6260.707
speciesClostridiales_bacterium_1_7_47FAA0.0110.6290.709
speciesHaemophilus_parainfluenzae0.0110.6320.71
speciesCoprobacillus_sp_D6-0.0110.6330.71
speciesPorphyromonas_uenonis0.0110.640.716
speciesLeuconostoc_lactis-0.0110.6490.724
speciesStreptococcus_phage_Sfi210.0110.650.724
speciesAcidaminococcus_intestini-0.010.6570.73
genusCoriobacteriaceae_noname0.010.6610.732
speciesBacteroides_sp_3_1_190.010.680.751
genusRoseburia-0.010.6810.751
speciesCampylobacter_concisus0.0090.6880.757
speciesLactobacillus_reuteri0.0090.6930.761
phylumEuryarchaeota-0.0090.7110.779
speciesClostridium_hathewayi0.0080.7180.784
speciesEnterobacter_cloacae-0.0080.7370.803
genusAdlercreutzia-0.0080.740.803
speciesAdlercreutzia_equolifaciens-0.0080.740.803
genusMethanobrevibacter-0.0070.7470.809
speciesOdoribacter_laneus0.0070.7530.813
speciesKlebsiella_phage_KP360.0070.7730.833
speciesPrevotella_buccae0.0070.7780.836
speciesLactobacillus_crispatus-0.0060.7860.843
speciesBifidobacterium_angulatum0.0060.7970.852
speciesCoprococcus_eutactus0.0060.7980.852
speciesClostridium_sp_KLE_17550.0060.8010.853
speciesParabacteroides_sp_D130.0060.810.861
genusEnterobacter0.0050.8390.89
speciesLactobacillus_salivarius-0.0050.8420.891
genusFaecalibacterium0.0040.8520.898
speciesFaecalibacterium_prausnitzii0.0040.8520.898
genusLambdalikevirus-0.0040.8670.911
genusSlackia-0.0040.8710.912
speciesClostridium_spiroforme-0.0040.8710.912
speciesEnterobacteria_phage_HK544-0.0040.8730.912
speciesClostridium_perfringens0.0030.8810.918
speciesCoprobacillus_sp_29_1-0.0030.8980.93
classMethanobacteria-0.0030.90.93
orderMethanobacteriales-0.0030.90.93
familyMethanobacteriaceae-0.0030.90.93
genusTunalikevirus-0.0030.9020.93
speciesEubacterium_cylindroides-0.0030.9090.935
speciesLactococcus_garvieae0.0020.9210.945
phylumProteobacteria-0.0020.9230.945
speciesMegasphaera_elsdenii0.0020.9260.946
speciesBacteroides_fluxus0.0020.930.948
speciesEnterobacter_aerogenes0.0020.9380.954
speciesLactobacillus_gasseri-0.0020.9450.959
speciesStreptococcus_infantarius0.0010.9520.964
speciesRoseburia_unclassified0.0010.9610.971
familyVeillonellaceae0.0010.9650.973
genusGordonibacter0.00.9850.987
speciesRuminococcus_champanellensis0.00.9850.987
speciesGordonibacter_pamelaeae0.00.9850.987
speciesMegasphaera_unclassified0.00.9880.988
Click on arrows to sort table data. Shift+click to sort by multiple columns.

Association of query gene abundance with clinical phenotypes:

Boxplots:


Statistics:

pheno country case_n ctrl_n case_mean ctrl_mean pvalue rank percentile
Type II diabetesSweden53920.01938309364780.025384677180.02931199112211553.91128
Ulcerative colitisSpain78660.03662310699080.02582744623650.0299097338184357311.7866
Rheumatoid arthritisChina127980.03158443170050.03061470244770.152617571199727324.2538
Colorectal cancerAustria64350.0196427370220.01549378212120.214748759132940431.8176
Liver cirrhosisChina1201140.05057672249070.03991905462270.5174045724812443482.0787
Type II diabetesDenmark752770.04349417264910.04054481034590.5341562247662126569.7053
Crohns diseaseSpain17660.03311504372330.02582744623650.5764708960772458781.7523
ObesityDenmark1691230.03942661564170.04179818165840.7249803743792457880.8194
Type II diabetesChina1831850.04057331471880.04982063459140.9804199942712995999.0086
Click on arrows to sort table data. Shift+click to sort by multiple columns.

Citation:

Nayfach S, Fischbach MA, Pollard KS. MetaQuery: a web server for rapid annotation and quantitative analysis of specific genes in the human gut microbiome. Bioinformatics 2015;31(14). doi:10.1093/bioinformatics/btv382