MetaQuery: quantitative analysis of the human gut microbiome

Results

Estimated gene abundances and results from statistical analyses

Job details:

Submission date: 2021-01-24 09:55:08 PST
Job id & description: 2380, guanosine7
Query type: protein
Count queries & homologs: 91, 92
Min % identity & max e-value: 100%, 1e-5
Min % query & target coverage: 95%, 95%

Click here to download results

Table of contents:


Gut microbiome genes homologous to your query gene:

query_id target_id status kegg eggnog phylum genus query_cov target_cov percent_identity
DOM022_GL00177553588830CompleteK03783COG0005unknownunknown100.0100.0100.0
MH0006_GL01131023574745CompleteK03783COG0005unknownunknown100.0100.0100.0
MH0400_GL00764203582060Lack 3'-endK03783COG0005Bacteroidetesunknown100.0100.0100.0
O2.UC27-1_GL01225523621978CompleteK03783COG0005FirmicutesFaecalibacterium100.0100.0100.0
MH0260_GL00746403579189CompleteK03783COG0005unknownunknown100.0100.0100.0
MH0347_GL00887653580747Lack 3'-endK03783COG0005unknownunknown100.0100.0100.0
O2.CD2-0_GL00658923583674CompleteK03783COG0005unknownunknown100.0100.0100.0
O2.UC43-0_GL00063613584745CompleteK03783COG0005unknownunknown100.0100.0100.0
MH0200_GL00938553578152CompleteK03783COG0005Bacteroidetesunknown100.0100.0100.0
MH0006_GL01050193574737CompleteK03783COG0005Bacteroidetesunknown100.0100.0100.0
MH0014_GL00583063575064CompleteK03783COG0005Bacteroidetesunknown100.0100.0100.0
MH0404_GL01621563582173CompleteK03783COG0005Bacteroidetesunknown100.0100.0100.0
O2.CD2-0_GL00549023583671CompleteK03783COG0005unknownunknown100.0100.0100.0
MH0011_GL01054993574905CompleteK03783COG0005Bacteroidetesunknown100.0100.0100.0
MH0069_GL00129333575705CompleteK03783COG0005Bacteroidetesunknown100.0100.0100.0
MH0092_GL00327163575982CompleteK03783COG0005Bacteroidetesunknown100.0100.0100.0
MH0106_GL00340013576325CompleteK03783COG0005Bacteroidetesunknown100.0100.0100.0
MH0132_GL00501783576794CompleteK03783COG0005unknownunknown100.0100.0100.0
MH0400_GL00400263582050CompleteK03783COG0005Bacteroidetesunknown100.0100.0100.0
SZEY-24A_GL00245243589785CompleteK03783COG0005BacteroidetesPrevotella100.0100.0100.0
SZEY-39A_GL00064893571181CompleteK03783COG0005Bacteroidetesunknown100.0100.0100.0
MH0107_GL00627083576343CompleteK03783COG0005Bacteroidetesunknown100.0100.0100.0
MH0138_GL00248193576879CompleteK03783COG0005unknownunknown100.0100.0100.0
MH0138_GL00383483576888CompleteK03783COG0005Bacteroidetesunknown100.0100.0100.0
MH0283_GL00688973579697CompleteK03783COG0005unknownunknown100.0100.0100.0
T2D-45A_GL00243013590582CompleteK03783COG0005Bacteroidetesunknown100.0100.0100.0
DOM005_GL00534143588747CompleteK03783COG0005BacteroidetesBacteroides100.0100.0100.0
MH0031_GL00212883575243CompleteK03783COG0005Bacteroidetesunknown100.0100.0100.0
MH0402_GL01074983582101CompleteK03783COG0005BacteroidetesBacteroides100.0100.0100.0
T2D-105A_GL01283903589963CompleteK03783COG0005Bacteroidetesunknown100.0100.0100.0
T2D-57A_GL00104873609419Lack 3'-endK03783COG0005unknownunknown100.0100.0100.0
MH0351_GL01164573580794CompleteK03783COG0005unknownunknown100.0100.0100.0
N085A_GL00512633589677CompleteK03783COG0005BacteroidetesBacteroides100.0100.0100.0
SZEY-39A_GL00064893556882CompleteK03783COG0005Bacteroidetesunknown99.2299.22100.0
T2D-48A_GL00824593590624CompleteK03783COG0005BacteroidetesBacteroides100.0100.0100.0
MH0046_GL00335743575410CompleteK03783COG0005Bacteroidetesunknown100.0100.0100.0
MH0161_GL00472153596067Lack 5'-endK03783COG0005unknownunknown100.0100.0100.0
MH0250_GL01137223578999CompleteK03783COG0005unknownunknown100.0100.0100.0
MH0243_GL01225443578880CompleteK03783COG0005unknownunknown100.0100.0100.0
MH0267_GL01607213616941CompleteK03783COG0005unknownunknown100.0100.0100.0
V1.CD46-0_GL01167023718519Lack 5'-endK03783COG0005unknownunknown100.0100.0100.0
158256496-stool1_revised3685773Lack 5'-endK03783COG0005unknownunknown100.0100.0100.0
V1.UC11-5_GL00315113681905CompleteK03783COG0005unknownunknown100.0100.0100.0
O2.CD3-0-PT_GL01755253772597Lack 5'-endK03783COG0005unknownunknown100.0100.0100.0
T2D-11A_GL00570753741072Lack 3'-endK03783COG0005unknownunknown100.0100.0100.0
MH0053_GL00392693745060Lack both endsK03783COG0005Bacteroidetesunknown100.0100.0100.0
MH0435_GL00324273791087Lack 5'-endK03783COG0005Bacteroidetesunknown100.0100.0100.0
N037A_GL01013103797885Lack 3'-endK03783COG0005unknownunknown100.0100.0100.0
MH0229_GL01785703824855Lack 3'-endK03783COG0005FirmicutesPseudoflavonifractor100.0100.0100.0
V1.CD32-4_GL01040643851545Lack 5'-endK03783COG0005Firmicutesunknown100.0100.0100.0
MH0428_GL01853903771592Lack 5'-endK03783COG0005unknownunknown100.0100.0100.0
MH0096_GL00289283860552Lack 3'-endK03783COG0005unknownunknown100.0100.0100.0
V1.FI02_GL01211893852076Lack 3'-endK03783COG0005Firmicutesunknown100.0100.0100.0
658659.HMPREF0983_002383979307CompleteK03783COG0005Firmicutesunknown100.0100.0100.0
MH0244_GL01036703883122Lack 3'-endK03783COG0005unknownunknown100.0100.0100.0
MH0448_GL01972043829779Lack 5'-endK03783COG0005unknownunknown100.0100.0100.0
MH0407_GL01915683886813Lack 3'-endK03783COG0005BacteroidetesBacteroides100.0100.0100.0
O2.UC58-0_GL01099713991429Lack 3'-endK03783COG0005Firmicutesunknown100.0100.0100.0
158499257-stool1_revised3896575Lack 3'-endK03783COG0005unknownunknown100.0100.0100.0
V1.UC49-0_GL01502563994538Lack 5'-endK03783COG0005BacteroidetesBacteroides100.0100.0100.0
O2.UC48-0_GL02691744095799Lack 5'-endK03783COG0005unknownunknown100.0100.0100.0
DLM013_GL00768183933958Lack 3'-endK03783COG1683;COG0005Actinobacteriaunknown100.0100.0100.0
V1.FI13_GL01714894055729Lack 5'-endK03783COG0005Firmicutesunknown100.0100.0100.0
MH0266_GL00000734068381CompleteK03783COG0005Bacteroidetesunknown100.0100.0100.0
V1.FI33_GL00296304182758Lack 5'-endK03783COG0005Firmicutesunknown100.0100.0100.0
MH0345_GL00829544153305Lack 5'-endK03783COG0005unknownunknown100.0100.0100.0
DOF003_GL00105294184672Lack 3'-endK03783COG0005Bacteroidetesunknown100.0100.0100.0
T2D-140A_GL00793844294490CompleteK03783COG0005FirmicutesFaecalibacterium100.0100.0100.0
V1.CD30-0_GL01113514267452Lack 5'-endK03783COG0005BacteroidetesBacteroides100.0100.0100.0
MH0427_GL00360774329137CompleteK03783COG0005Bacteroidetesunknown100.0100.0100.0
764588959-stool1_revised4407278CompleteK03783COG0005Bacteroidetesunknown100.0100.0100.0
MH0298_GL01575714325802CompleteK03783COG0005unknownunknown100.0100.0100.0
MH0427_GL00352554329136CompleteK03783COG0005Bacteroidetesunknown100.0100.0100.0
V1.UC10-2_GL00240524334620CompleteK03783COG0005unknownunknown100.0100.0100.0
MH0057_GL00435144320742CompleteK03783COG0005Bacteroidetesunknown100.0100.0100.0
706846339-stool1_revised4406707Lack 3'-endK03783COG0005Bacteroidetesunknown100.0100.0100.0
T2D-31A_GL00004684338520Lack 3'-endK03783COG0005FirmicutesStreptococcus100.0100.0100.0
160765029-stool1_revised4384796Lack 3'-endK03783COG0005Bacteroidetesunknown100.0100.0100.0
MH0090_GL00273494365637CompleteK03783COG0005Bacteroidetesunknown100.0100.0100.0
MH0187_GL00761744389615CompleteK03783COG0005Bacteroidetesunknown100.0100.0100.0
DLM018_GL00503864380815CompleteK03783COG0005Bacteroidetesunknown100.0100.0100.0
MH0274_GL00974824391653CompleteK03783COG0005unknownunknown100.0100.0100.0
MH0277_GL00206304577120Lack 3'-endK03783COG0005Proteobacteriaunknown100.0100.0100.0
553171.HMPREF0648_02524570801CompleteK03783COG0005BacteroidetesPrevotella100.0100.0100.0
T2D-52A_GL00077404639330Lack 5'-endK03783COG0005BacteroidetesBacteroides100.0100.0100.0
679189.HMPREF9019_07114842654CompleteK03783COG0005BacteroidetesPrevotella100.0100.0100.0
MH0425_GL01717724853868Lack 3'-endK03815COG0005ProteobacteriaCitrobacter100.0100.0100.0
866771.HMPREF9296_09834842704CompleteK03783COG0005BacteroidetesPrevotella100.0100.0100.0
MH0185_GL01316904846865Lack 3'-endK03783COG0005Bacteroidetesunknown100.0100.0100.0
160502038-stool1_revised5284972Lack both endsK03783COG0005BacteroidetesPrevotella100.0100.0100.0
O2.UC34-2_GL00282525303220Lack 5'-endK03783COG0005FirmicutesStreptococcus100.0100.0100.0
N056A_GL00364785490728Lack 5'-endK03783COG0005FirmicutesStreptococcus100.0100.0100.0
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The abundance of your query across gut microbiome samples:




The prevalence of your query across gut microbiome samples:




Taxonomic groups correlated with your query gene:

tax_level tax_name spearman_rho pvalue qvalue
speciesBacteroides_coprocola0.397.72e-693.64e-66
speciesBacteroides_plebeius0.3122.12e-435e-41
speciesBacteroides_caccae0.2972.71e-394.26e-37
familyPrevotellaceae0.2957.34e-398.66e-37
genusPrevotella0.2372.61e-252.46e-23
speciesParaprevotella_xylaniphila0.2323.34e-242.63e-22
genusParaprevotella0.2264.44e-232.99e-21
speciesParaprevotella_unclassified0.2255.9e-233.48e-21
speciesPrevotella_stercorea0.2149.49e-214.98e-19
speciesPrevotella_copri0.2112.7e-201.27e-18
speciesParaprevotella_clara0.1951.74e-177.47e-16
speciesBacteroides_eggerthii0.1719.44e-143.71e-12
genusEggerthella-0.1682.68e-139.73e-12
genusCatenibacterium0.1673.46e-131.09e-11
speciesCatenibacterium_mitsuokai0.1673.46e-131.09e-11
genusFaecalibacterium0.1665.33e-131.48e-11
speciesFaecalibacterium_prausnitzii0.1665.33e-131.48e-11
familySutterellaceae0.1631.16e-123.04e-11
speciesEggerthella_unclassified-0.1621.62e-124.02e-11
speciesEubacterium_eligens0.1612.24e-125.29e-11
speciesAlistipes_senegalensis0.1579.79e-122.2e-10
genusPhascolarctobacterium0.1514.92e-111.01e-09
speciesPhascolarctobacterium_succinatutens0.1514.92e-111.01e-09
classBetaproteobacteria0.157.86e-111.55e-09
orderBurkholderiales0.1471.7e-103.21e-09
speciesBacteroides_finegoldii0.1435.84e-101.06e-08
speciesEubacterium_biforme0.1426.24e-101.09e-08
speciesEggerthella_lenta-0.1419.83e-101.66e-08
familyAcidaminococcaceae0.141.27e-092.07e-08
genusOdoribacter0.1338e-091.26e-07
speciesDesulfovibrio_piger0.1321.02e-081.55e-07
orderPasteurellales0.131.58e-082.26e-07
familyPasteurellaceae0.131.58e-082.26e-07
speciesBacteroides_stercoris0.1282.49e-083.45e-07
speciesBacteroides_faecis0.1282.56e-083.45e-07
speciesHaemophilus_parainfluenzae0.1282.99e-083.92e-07
genusHaemophilus0.1273.67e-084.68e-07
speciesParabacteroides_merdae0.1255.31e-086.6e-07
speciesOdoribacter_splanchnicus0.1255.91e-087.15e-07
speciesAlistipes_shahii0.1247.37e-088.7e-07
genusGordonibacter-0.1238.83e-089.92e-07
speciesGordonibacter_pamelaeae-0.1238.83e-089.92e-07
speciesRoseburia_inulinivorans0.1221.31e-071.44e-06
speciesParabacteroides_goldsteinii0.1173.65e-073.87e-06
speciesParabacteroides_johnsonii0.1173.69e-073.87e-06
classNegativicutes0.1148.03e-078.06e-06
orderSelenomonadales0.1148.03e-078.06e-06
speciesBacteroides_fragilis-0.1121.26e-061.24e-05
speciesBacteroides_coprophilus0.1092.53e-062.44e-05
genusBarnesiella0.1073.52e-063.26e-05
speciesBarnesiella_intestinihominis0.1073.52e-063.26e-05
genusDesulfovibrio0.1064.33e-063.93e-05
speciesMegamonas_funiformis0.1064.47e-063.98e-05
genusCoprobacillus-0.1029.31e-068.14e-05
speciesBacteroides_massiliensis0.1021.01e-058.67e-05
speciesClostridium_bolteae-0.1021.05e-058.85e-05
speciesBacteroides_clarus0.1011.15e-059.2e-05
familyBacteroidales_noname0.1011.17e-059.2e-05
genusBacteroidales_noname0.1011.17e-059.2e-05
speciesBacteroidales_bacterium_ph80.1011.17e-059.2e-05
genusAggregatibacter0.1011.22e-059.44e-05
speciesLachnospiraceae_bacterium_5_1_57FAA-0.11.48e-050.000113
speciesClostridium_clostridioforme-0.0982.3e-050.000172
genusMitsuokella0.0972.64e-050.000195
speciesMitsuokella_unclassified0.0954e-050.00029
speciesFusobacterium_mortiferum0.0954.07e-050.000291
speciesAcidaminococcus_fermentans0.0944.33e-050.000305
genusButyrivibrio0.0944.39e-050.000305
speciesMitsuokella_multacida0.0944.56e-050.000312
speciesClostridium_symbiosum-0.0918.18e-050.000552
speciesCoprobacillus_unclassified-0.090.00010.000665
speciesDialister_invisus-0.090.0001020.000669
speciesRuminococcus_callidus0.0890.0001210.000782
speciesEubacterium_sp_3_1_31-0.0880.0001430.000912
genusSutterella0.0870.0001580.000994
speciesAlistipes_putredinis0.0860.0002090.00129
speciesSutterella_wadsworthensis0.0860.0002110.00129
speciesVeillonella_atypica0.0850.0002460.00149
speciesAggregatibacter_segnis0.0850.000250.00149
speciesClostridium_perfringens0.0840.0002570.00152
speciesBacteroides_salanitronis0.0840.0002980.00174
genusMegasphaera0.0820.0003850.00222
speciesOscillibacter_unclassified0.0820.0003990.00225
phylumBacteroidetes0.0820.0004090.00225
classBacteroidia0.0820.000410.00225
orderBacteroidales0.0820.000410.00225
speciesLachnospiraceae_bacterium_8_1_57FAA0.0810.0004390.00238
speciesLachnospiraceae_bacterium_9_1_43BFAA-0.080.0005110.00272
genusCoprobacter0.080.0005190.00272
speciesCoprobacter_fastidiosus0.080.0005190.00272
speciesPrevotella_buccae0.080.0005620.00291
speciesLactobacillus_ruminis0.0790.0005880.00302
speciesOdoribacter_unclassified0.0790.0005980.00304
genusAdlercreutzia-0.0790.0006550.00325
speciesAdlercreutzia_equolifaciens-0.0790.0006550.00325
speciesMegamonas_unclassified0.0780.0007770.00382
speciesClostridium_hathewayi-0.0770.0008080.00393
genusSutterellaceae_unclassified0.0770.0008180.00394
speciesVeillonella_unclassified0.0770.0008650.00412
genusButyricimonas0.0770.0009110.00423
speciesButyricimonas_synergistica0.0770.0009110.00423
genusRoseburia0.0770.0009150.00423
genusMegamonas0.0760.000960.0044
speciesButyrivibrio_crossotus0.0760.0009970.00449
genusBlautia-0.0760.0009990.00449
speciesEubacterium_siraeum0.0760.001020.00454
genusActinobacillus0.0750.001170.00511
speciesActinobacillus_unclassified0.0750.001170.00511
speciesClostridium_ramosum-0.0750.001180.00511
speciesAnaerostipes_unclassified-0.0740.001270.00545
speciesCoprococcus_comes0.0740.001310.00557
genusPantoea-0.0730.001510.00631
speciesPantoea_unclassified-0.0730.001510.00631
speciesRuminococcus_gnavus-0.0730.001560.00646
speciesBacteroides_salyersiae0.0730.001690.00694
speciesMegamonas_rupellensis0.0720.001840.00746
speciesMegamonas_hypermegale0.0720.001850.00746
genusCoprococcus0.0720.001930.00772
genusDialister-0.0720.001960.00777
speciesBacteroides_barnesiae0.0710.002030.00798
genusLactobacillus0.0710.002260.00882
speciesErysipelotrichaceae_bacterium_6_1_45-0.070.002450.00948
genusRuminococcus-0.070.002610.00997
speciesVeillonella_dispar0.070.002620.00997
phylumActinobacteria-0.0690.002720.0102
classActinobacteria-0.0690.002720.0102
speciesOlsenella_unclassified0.0690.002980.0111
speciesAlistipes_finegoldii0.0680.003050.0112
speciesRuminococcus_sp_5_1_39BFAA-0.0680.003160.0115
genusAcidaminococcus0.0680.003170.0115
familyOscillospiraceae0.0680.003320.0119
genusOscillibacter0.0680.003320.0119
familyLactobacillaceae0.0680.003360.0119
speciesLachnospiraceae_bacterium_1_4_56FAA-0.0670.00350.0123
speciesMegasphaera_unclassified0.0670.003650.0128
genusParasutterella0.0660.004290.0148
speciesParasutterella_excrementihominis0.0660.004290.0148
speciesClostridium_sp_L2_500.0650.0050.017
classEpsilonproteobacteria0.0650.005050.017
orderCampylobacterales0.0650.005050.017
genusBifidobacterium-0.0650.005210.0174
speciesRoseburia_hominis0.0640.005340.0177
genusVeillonella0.0640.005450.0179
speciesCampylobacter_concisus0.0640.005460.0179
familyPropionibacteriaceae-0.0640.005880.0191
speciesErysipelotrichaceae_bacterium_21_3-0.0640.0060.0192
orderBifidobacteriales-0.0640.006010.0192
familyBifidobacteriaceae-0.0640.006010.0192
genusAnaerostipes-0.0630.006760.0214
speciesStreptococcus_vestibularis0.0620.00740.0233
genusSolobacterium-0.0620.007710.0239
speciesSolobacterium_moorei-0.0620.007710.0239
speciesFusobacterium_ulcerans-0.0610.00790.0244
speciesRuminococcus_bromii-0.0610.008110.0249
speciesBlautia_producta-0.0610.008310.0253
speciesLactobacillus_vaginalis0.060.009150.0277
genusRothia0.060.010.0301
familyMicrococcaceae0.0590.01020.0305
familyEnterococcaceae-0.0590.01030.0306
genusEnterococcus-0.0590.01060.0313
speciesBlautia_hydrogenotrophica-0.0590.01070.0313
genusEnterobacter0.0590.01080.0313
speciesHoldemania_sp_AP2-0.0590.01080.0313
speciesBifidobacterium_bifidum-0.0590.01090.0314
genusErysipelotrichaceae_noname0.0580.0120.0341
speciesEubacterium_cylindroides0.0580.0120.0341
speciesClostridium_leptum-0.0580.01270.0359
genusOlsenella0.0580.01290.0362
speciesAlistipes_indistinctus0.0570.0130.0363
genusPropionibacterium-0.0570.01420.0394
classDeltaproteobacteria0.0560.01480.0396
orderDesulfovibrionales0.0560.01480.0396
familyDesulfovibrionaceae0.0560.01480.0396
phylumVerrucomicrobia-0.0560.0150.0396
classVerrucomicrobiae-0.0560.0150.0396
orderVerrucomicrobiales-0.0560.0150.0396
familyVerrucomicrobiaceae-0.0560.0150.0396
genusAkkermansia-0.0560.0150.0396
speciesAkkermansia_muciniphila-0.0560.0150.0396
speciesBifidobacterium_breve-0.0560.01550.0406
speciesMethanobrevibacter_unclassified0.0560.01560.0407
speciesLachnospiraceae_bacterium_6_1_63FAA-0.0550.01650.0428
speciesStreptococcus_salivarius0.0550.01720.0444
speciesEnterococcus_faecium-0.0550.01760.0451
speciesCoprococcus_sp_ART55_10.0550.01790.0454
classMethanobacteria0.0550.01810.0454
orderMethanobacteriales0.0550.01810.0454
familyMethanobacteriaceae0.0550.01810.0454
phylumEuryarchaeota0.0540.01970.0492
genusCampylobacter0.0540.02040.0504
speciesClostridiales_bacterium_1_7_47FAA-0.0540.02040.0504
speciesDorea_formicigenerans0.0530.0210.0516
familyCampylobacteraceae0.0530.02140.0523
speciesBacteroides_uniformis-0.0530.02160.0526
speciesBifidobacterium_longum-0.0530.02180.0528
genusAcidaminococcaceae_unclassified0.0530.02270.0547
genusSuccinatimonas0.0530.02310.0551
speciesSuccinatimonas_hippei0.0530.02310.0551
orderAeromonadales0.0520.02370.0562
speciesRothia_mucilaginosa0.0520.02410.0569
familyVeillonellaceae0.0520.02440.0573
speciesAcidaminococcus_intestini0.0520.02510.0586
genusClostridium-0.0520.02520.0586
familySuccinivibrionaceae0.0510.02610.0601
speciesVeillonella_parvula0.0510.02610.0601
speciesRuminococcus_sp_JC304-0.0510.02740.0628
speciesStreptococcus_anginosus0.0510.02770.0632
speciesMethanobrevibacter_smithii0.050.030.0681
speciesMegasphaera_elsdenii0.050.03070.0693
speciesStreptococcus_parasanguinis0.050.03090.0693
speciesLactobacillus_crispatus0.050.0310.0693
familyClostridiaceae-0.0490.03430.0764
speciesErysipelotrichaceae_bacterium_5_2_54FAA-0.0490.03460.0767
speciesEnterobacter_cloacae0.0490.03490.077
speciesLachnospiraceae_bacterium_5_1_63FAA-0.0490.03580.0786
classErysipelotrichia0.0480.03840.083
orderErysipelotrichales0.0480.03840.083
familyErysipelotrichaceae0.0480.03840.083
genusRuminococcaceae_noname0.0480.03870.083
speciesRuminococcaceae_bacterium_D160.0480.03870.083
familyOxalobacteraceae0.0480.03990.0852
speciesCollinsella_aerofaciens0.0470.04090.087
genusMethanobrevibacter0.0470.04350.0921
genusOxalobacter0.0460.04450.0934
speciesOxalobacter_formigenes0.0460.04450.0934
speciesFusobacterium_varium-0.0460.04680.0977
speciesSubdoligranulum_sp_4_3_54A2FAA-0.0460.04790.0996
speciesErysipelotrichaceae_bacterium_2_2_44A-0.0450.04970.103
speciesLachnospiraceae_bacterium_7_1_58FAA0.0450.05110.105
speciesCitrobacter_unclassified0.0450.05150.106
genusLachnospiraceae_noname-0.0450.05190.106
speciesEubacterium_dolichum-0.0450.0520.106
genusC2likevirus0.0450.05290.106
familyViruses_noname-0.0450.0530.106
genusViruses_noname-0.0450.0530.106
speciesCoprococcus_catus0.0440.05480.11
speciesC2likevirus_unclassified0.0440.05640.112
genusClostridiales_noname-0.0440.05690.113
speciesAlistipes_unclassified-0.0430.06030.119
genusCollinsella0.0430.06080.12
speciesCoprobacillus_sp_29_1-0.0430.06210.121
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familyCoriobacteriaceae-0.0430.06240.121
speciesKlebsiella_pneumoniae0.0430.0630.122
speciesLactobacillus_reuteri0.0430.06380.123
speciesBacteroides_ovatus-0.0420.06980.134
speciesAlistipes_onderdonkii-0.0410.07290.139
speciesBacteroides_thetaiotaomicron-0.0410.07580.144
speciesPeptostreptococcaceae_noname_unclassified0.0410.07760.146
speciesBifidobacterium_animalis0.0410.07780.146
speciesLactobacillus_salivarius0.0410.07780.146
orderLactobacillales0.040.08040.151
speciesAnaerotruncus_colihominis-0.040.08090.151
speciesLactobacillus_mucosae0.040.08160.152
speciesButyrivibrio_unclassified0.040.08190.152
genusCitrobacter0.040.08620.159
classBacilli0.040.08730.16
speciesEnterobacter_aerogenes0.0390.0880.161
speciesCitrobacter_freundii0.0390.09140.167
speciesLactococcus_phage_bIL670.0390.09210.167
genusStreptococcus0.0390.09360.169
genusTunalikevirus-0.0390.09430.17
speciesLactobacillus_fermentum0.0390.09570.172
genusProteus-0.0380.09940.177
speciesClostridium_asparagiforme-0.0380.09960.177
genusMethanosphaera0.0380.1010.179
speciesMethanosphaera_stadtmanae0.0380.1010.179
familyStreptococcaceae0.0380.1020.18
speciesDesulfovibrio_desulfuricans0.0380.1030.181
speciesLactococcus_phage_jm20.0370.1050.184
familyClostridiales_noname-0.0370.1090.189
speciesParabacteroides_distasonis0.0370.1090.189
speciesMegasphaera_micronuciformis0.0370.110.19
speciesEnterobacteria_phage_HK544-0.0360.1180.203
familyBurkholderiales_noname0.0360.1210.208
speciesEscherichia_coli-0.0360.1220.209
speciesDialister_succinatiphilus0.0350.1250.213
genusLeuconostoc-0.0350.1360.231
speciesClostridium_spiroforme-0.0340.140.236
speciesEnterococcus_faecalis-0.0340.140.236
speciesRuminococcus_torques-0.0340.1420.239
genusBurkholderiales_noname0.0340.1470.245
speciesBurkholderiales_bacterium_1_1_470.0340.1470.245
speciesRuminococcus_champanellensis0.0330.1490.247
speciesCoprococcus_eutactus0.0330.1490.247
speciesLactobacillus_sanfranciscensis-0.0330.1550.255
speciesRoseburia_intestinalis0.0330.1550.255
speciesCollinsella_tanakaei0.0320.1650.269
speciesAcidaminococcus_unclassified0.0320.1650.269
speciesBacteroides_oleiciplenus0.0320.1670.272
familyPeptostreptococcaceae0.0320.1690.273
speciesOscillibacter_sp_KLE_1728-0.0320.1690.273
orderBacillales-0.0320.1710.275
speciesBifidobacterium_dentium0.0320.1730.278
speciesBacteroides_sp_4_3_47FAA0.0310.1750.279
speciesStreptococcus_australis-0.0310.1750.279
speciesRuminococcus_lactaris0.0310.1780.283
speciesEubacterium_ramulus0.0310.1810.286
speciesErysipelotrichaceae_bacterium_3_1_530.0310.1820.286
speciesKlebsiella_oxytoca-0.0310.1820.286
speciesEggerthella_sp_1_3_56FAA-0.0310.1850.29
speciesKlebsiella_phage_KP36-0.030.1880.294
genusCoriobacteriaceae_noname0.030.1890.294
speciesCoriobacteriaceae_bacterium_phI0.030.1950.303
familyRikenellaceae0.030.1990.307
genusAlistipes0.030.1990.307
speciesTuricibacter_unclassified0.0290.2050.315
genusHoldemania-0.0290.2070.317
genusFlavonifractor-0.0290.2090.317
speciesFlavonifractor_plautii-0.0290.2090.317
genusPyramidobacter-0.0290.210.317
speciesKlebsiella_sp_MS_92_3-0.0290.210.317
speciesPyramidobacter_piscolens-0.0290.210.317
speciesAlistipes_sp_HGB5-0.0290.2130.32
classClostridia-0.0280.2190.327
orderClostridiales-0.0280.2190.327
genusButyricicoccus-0.0280.2290.338
speciesButyricicoccus_pullicaecorum-0.0280.2290.338
orderViruses_noname0.0280.230.338
genusBilophila0.0280.230.338
speciesSlackia_piriformis0.0280.230.338
phylumSynergistetes-0.0280.2330.338
classSynergistia-0.0280.2330.338
orderSynergistales-0.0280.2330.338
familySynergistaceae-0.0280.2330.338
familyPodoviridae0.0280.2340.339
speciesEubacterium_limosum-0.0270.2390.344
speciesHaemophilus_sputorum0.0270.2390.344
speciesBilophila_unclassified0.0270.2430.349
genusTuricibacter0.0270.2450.349
genusSiphoviridae_noname-0.0270.2450.349
familyLeuconostocaceae-0.0270.2460.35
speciesHaemophilus_paraphrohaemolyticus0.0270.250.354
speciesKlebsiella_unclassified-0.0260.2530.356
speciesAnaerotruncus_unclassified0.0260.2530.356
speciesParabacteroides_sp_20_30.0260.2550.358
genusPeptostreptococcaceae_noname0.0260.2560.359
speciesClostridium_citroniae-0.0260.2630.367
genusEubacterium0.0260.2670.372
familyEubacteriaceae0.0250.2710.376
speciesLactobacillus_rhamnosus-0.0250.2720.376
speciesStreptococcus_lutetiensis0.0250.2730.377
speciesBacteroides_fluxus-0.0250.2770.381
speciesLactobacillus_plantarum-0.0250.280.384
genusMorganella-0.0250.2860.39
speciesMorganella_morganii-0.0250.2860.39
speciesPropionibacterium_freudenreichii-0.0250.2880.392
speciesStreptococcus_gordonii0.0240.3060.415
speciesPeptostreptococcus_anaerobius-0.0240.3090.418
familyBacillales_noname-0.0230.3110.418
genusGemella-0.0230.3110.418
speciesHoldemania_unclassified0.0230.3140.421
phylumFusobacteria0.0230.3170.421
classFusobacteriia0.0230.3170.421
orderFusobacteriales0.0230.3170.421
speciesEscherichia_unclassified0.0230.3220.427
speciesStreptococcus_pasteurianus-0.0230.3240.428
genusPeptoniphilus0.0230.3270.429
speciesAnaerostipes_hadrus-0.0230.3270.429
speciesStreptococcus_mutans0.0230.3280.429
genusPseudoflavonifractor0.0230.3290.429
speciesPseudoflavonifractor_capillosus0.0230.3290.429
genusFusobacterium0.0220.3340.434
genusEscherichia-0.0220.3370.437
speciesOscillibacter_sp_KLE_1745-0.0220.3380.437
speciesEubacterium_rectale0.0220.3390.437
speciesTuricibacter_sanguinis0.0220.3420.44
speciesCollinsella_unclassified0.0220.3430.44
speciesBacteroides_vulgatus0.0220.3480.445
speciesBacteroides_intestinalis0.0210.3540.452
speciesBilophila_wadsworthia0.0210.360.458
speciesBacteroides_xylanisolvens0.0210.3650.463
speciesBacteroides_dorei-0.020.3770.477
familyFusobacteriaceae0.020.3830.483
speciesEubacterium_hallii-0.020.3890.49
speciesSutterella_parvirubra0.020.3930.493
classGammaproteobacteria0.0190.4160.519
familyPorphyromonadaceae0.0190.4160.519
speciesBacteroides_cellulosilyticus0.0190.420.523
phylumProteobacteria0.0180.4280.532
speciesPrevotella_bivia-0.0180.440.545
genusActinomyces-0.0180.4470.552
speciesEubacterium_ventriosum-0.0170.4550.561
speciesParabacteroides_unclassified-0.0170.4580.563
speciesBacteroides_sp_3_1_190.0170.4630.568
genusKlebsiella0.0170.4740.579
speciesStreptococcus_infantarius0.0170.4750.579
familyMyoviridae-0.0160.4760.579
speciesFusobacterium_nucleatum0.0160.4790.581
speciesAlistipes_sp_AP110.0160.480.581
genusSlackia0.0160.4830.583
speciesLactobacillus_oris0.0160.4890.589
speciesRoseburia_unclassified-0.0160.4990.599
speciesCollinsella_intestinalis-0.0160.5030.602
speciesBacteroides_pectinophilus0.0150.5040.602
speciesClostridium_nexile-0.0150.5060.603
familyClostridiales_Family_XI_Incertae_Sedis-0.0150.5070.603
genusMyoviridae_noname-0.0150.5150.611
speciesParabacteroides_sp_D130.0150.5230.619
speciesLactobacillus_gasseri0.0140.5350.63
speciesLachnospiraceae_bacterium_3_1_46FAA0.0140.5350.63
speciesStreptococcus_sanguinis-0.0140.540.634
genusPorphyromonas0.0140.5430.636
speciesProteus_mirabilis-0.0140.5530.646
speciesLeuconostoc_lactis-0.0130.5610.654
speciesLactobacillus_acidophilus0.0130.5680.66
speciesLachnospiraceae_bacterium_3_1_57FAA_CT1-0.0130.5690.66
speciesLactobacillus_amylovorus-0.0130.5720.662
familyActinomycetaceae-0.0130.5760.665
genusLambdalikevirus0.0130.5790.667
speciesLactobacillus_delbrueckii0.0120.5920.678
orderEnterobacteriales-0.0120.5930.678
familyEnterobacteriaceae-0.0120.5930.678
speciesBacteroides_sp_1_1_60.0120.5990.683
genusStaphylococcus-0.0120.6030.685
speciesClostridium_bartlettii0.0120.6040.685
speciesLachnospiraceae_bacterium_2_1_46FAA-0.0110.6290.711
speciesRuminococcus_obeum0.0110.630.711
speciesStreptococcus_thermophilus-0.0110.6460.728
speciesLactococcus_phage_936_sensu_lato-0.010.6510.731
speciesBacteroides_sp_2_1_220.010.6520.731
familyBacteroidaceae-0.010.660.736
genusBacteroides-0.010.660.736
speciesGemella_morbillorum-0.010.6630.738
genusPeptostreptococcus-0.010.6650.739
familyStaphylococcaceae-0.010.6680.74
speciesLactobacillus_casei_paracasei-0.010.6740.743
speciesClostridium_sp_ATCC_BAA_442-0.010.6740.743
speciesStreptococcus_mitis_oralis_pneumoniae-0.0090.6840.752
phylumViruses_noname0.0090.6870.752
classViruses_noname0.0090.6870.752
speciesBacteroides_nordii0.0090.6890.753
speciesBifidobacterium_catenulatum-0.0090.6990.762
familyLachnospiraceae0.0090.7050.767
speciesLachnospiraceae_bacterium_1_1_57FAA0.0090.7080.768
genusAnaerotruncus0.0080.7260.786
speciesDorea_longicatena-0.0080.7320.791
speciesWeissella_cibaria-0.0080.7370.794
speciesPorphyromonas_uenonis-0.0080.7390.795
speciesBifidobacterium_angulatum-0.0080.7420.796
speciesLactococcus_phage_phi70.0070.760.813
orderCaudovirales0.0070.7630.815
genusSubdoligranulum-0.0070.7730.824
speciesBifidobacterium_pseudocatenulatum-0.0070.7770.826
speciesLachnospiraceae_bacterium_2_1_58FAA0.0060.7890.836
genusLactococcus-0.0060.790.836
genusWeissella0.0060.7920.836
speciesLactococcus_lactis-0.0060.8070.85
speciesBifidobacterium_adolescentis-0.0050.8160.857
orderActinomycetales0.0050.8190.857
phylumFirmicutes0.0050.820.857
speciesPorphyromonas_asaccharolytica0.0050.8210.857
speciesOdoribacter_laneus0.0050.8350.87
speciesPeptostreptococcus_stomatis0.0040.8570.891
familyRuminococcaceae-0.0040.8690.901
genusParabacteroides0.0040.8720.903
speciesCoprobacillus_sp_D60.0040.8740.903
speciesLactococcus_phage_P680-0.0030.9010.925
speciesHoldemania_filiformis0.0030.9010.925
genusClostridiaceae_noname0.0030.9030.925
speciesClostridiaceae_bacterium_JC1180.0030.9030.925
speciesStreptococcus_phage_Sfi210.0030.9110.93
genusDorea0.0030.9120.93
speciesLactococcus_garvieae-0.0020.9170.933
speciesClostridium_sp_KLE_1755-0.0020.9310.945
speciesSubdoligranulum_unclassified-0.0020.9370.949
speciesWeissella_confusa-0.0010.9640.974
familySiphoviridae-0.0010.9770.985
genusParvimonas-0.0010.9810.986
orderPseudomonadales0.0010.9820.986
speciesParvimonas_unclassified0.00.9860.988
speciesDorea_unclassified0.00.9980.998
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Association of query gene abundance with clinical phenotypes:

Boxplots:


Statistics:

pheno country case_n ctrl_n case_mean ctrl_mean pvalue rank percentile
Type II diabetesSweden53920.01850568452640.008621330124480.00845649776543301.11751
Crohns diseaseSpain17660.01965248873930.02386944963820.05579922177861193739.6908
Type II diabetesDenmark752770.03018945893510.02070703358420.2134921430551339243.8981
Type II diabetesChina1831850.01710345382490.0240765117010.3707790347171824260.2862
Rheumatoid arthritisChina127980.01996509824450.01201219879310.4355559291551582552.7729
Ulcerative colitisSpain78660.03002889542420.02386944963820.696197019612364778.0069
ObesityDenmark1691230.02282887894530.01751086385140.7850723491582579484.818
Liver cirrhosisChina1201140.02148529629730.02793015523310.9451291408972882596.8289
Colorectal cancerAustria64350.01476202311270.008317674837750.9562226099542857396.6741
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Citation:

Nayfach S, Fischbach MA, Pollard KS. MetaQuery: a web server for rapid annotation and quantitative analysis of specific genes in the human gut microbiome. Bioinformatics 2015;31(14). doi:10.1093/bioinformatics/btv382