MetaQuery: quantitative analysis of the human gut microbiome

Results

Estimated gene abundances and results from statistical analyses

Job details:

Submission date: 2021-01-24 09:59:40 PST
Job id & description: 2386, purine6
Query type: protein
Count queries & homologs: 100, 100
Min % identity & max e-value: 100%, 1e-5
Min % query & target coverage: 95%, 95%

Click here to download results

Table of contents:


Gut microbiome genes homologous to your query gene:

query_id target_id status kegg eggnog phylum genus query_cov target_cov percent_identity
MH0280_GL00472063155494Lack 5'-endK00772COG0005unknownunknown100.0100.0100.0
MH0454_GL00311503175327Lack 5'-endK05810COG1496FirmicutesDorea100.0100.0100.0
BGI-34A_GL00043473196368Lack 5'-endK05810COG1496BacteroidetesBacteroides100.0100.0100.0
MH0003_GL00666463167323CompleteK05810COG1496unknownunknown100.0100.0100.0
MH0126_GL01077103152923CompleteK05810COG1496BacteroidetesPrevotella100.0100.0100.0
MH0340_GL01504903172854CompleteK05810COG1496FirmicutesRuminococcus100.0100.0100.0
MH0148_GL00567613153314CompleteK05810COG1496unknownunknown100.0100.0100.0
NLM024_GL00310843180250CompleteK03784COG0813unknownunknown100.0100.0100.0
O2.UC11-1_GL00564503175616CompleteK05810COG1496FirmicutesDorea100.0100.0100.0
553973.CLOHYLEM_042293199512CompleteK05810COG1496FirmicutesClostridium100.0100.0100.0
MH0009_GL00399283167488CompleteK05810COG1496unknownunknown100.0100.0100.0
MH0106_GL00844223168886Lack 5'-endK05810COG1496BacteroidetesBacteroides100.0100.0100.0
O2.UC15-0_GL00002293175768CompleteK05810COG1496unknownunknown100.0100.0100.0
MH0006_GL00548723183823CompleteK05810COG1496unknownunknown100.0100.0100.0
MH0239_GL00659623154805Lack 5'-endK03783COG0005unknownunknown100.0100.0100.0
MH0433_GL00092683158355CompleteK05810COG1496unknownunknown100.0100.0100.0
V1.CD54-0_GL00771423193740CompleteK05810COG1496FirmicutesClostridium100.0100.0100.0
V1.CD54-0_GL01271463193747CompleteK05810COG1496FirmicutesClostridium100.0100.0100.0
NLM004_GL00467883163769CompleteK05810COG1496unknownunknown100.0100.0100.0
O2.UC11-1_GL01173243159177CompleteK03783COG0005unknownunknown100.0100.0100.0
V1.CD6-4_GL00373023177960CompleteK03783COG0005unknownunknown100.0100.0100.0
MH0002_GL00557383183707CompleteK05810COG1496unknownunknown100.0100.0100.0
T2D-135A_GL00426573181230CompleteK05810COG1496unknownunknown100.0100.0100.0
MH0006_GL01872523167450CompleteK03783COG0005unknownunknown100.0100.0100.0
MH0212_GL00841343154423CompleteK03783COG0005Firmicutesunknown100.0100.0100.0
MH0260_GL01114343187697CompleteK05810COG1496unknownunknown100.0100.0100.0
MH0287_GL00753413155601CompleteK03783COG0005unknownunknown100.0100.0100.0
MH0444_GL01044313158671CompleteK03783COG0005FirmicutesBlautia100.0100.0100.0
O2.UC20-1_GL00219253159443CompleteK03783COG0005unknownunknown100.0100.0100.0
T2D-47A_GL00804363165146CompleteK03783COG0005Firmicutesunknown100.0100.0100.0
MH0005_GL00061423199795CompleteK05810COG1496BacteroidetesBacteroides100.0100.0100.0
O2.CD3-0-PT_GL00379343191542CompleteK03783COG0005Firmicutesunknown100.0100.0100.0
O2.UC35-0_GL00544053159851CompleteK05810COG1496unknownunknown100.0100.0100.0
159551223-stool1_revised3198359Lack 5'-endK03783COG0005BacteroidetesAlistipes100.0100.0100.0
MH0009_GL00419613167490CompleteK03783COG0005unknownunknown100.0100.0100.0
T2D-51A_GL01087143181573CompleteK05810COG1496BacteroidetesParabacteroides100.0100.0100.0
T2D-63A_GL00692393181693CompleteK03783COG0005FirmicutesBlautia100.0100.0100.0
V1.FI11_GL00038033178217CompleteK00772COG0005FirmicutesAcidaminococcus100.0100.0100.0
1072459.CE10_27883199214CompleteK03815COG0005ProteobacteriaEscherichia100.0100.0100.0
457421.CBFG_046023199409CompleteK03783COG0005Firmicutesunknown100.0100.0100.0
763982056-stool2_revised3198863Lack 3'-endK03783COG0005unknownunknown100.0100.0100.0
MH0001_GL00019683167258CompleteK03783COG0005unknownunknown100.0100.0100.0
MH0003_GL00086733167303CompleteK03783COG0005unknownunknown100.0100.0100.0
MH0136_GL00939683185686CompleteK03783COG0005unknownunknown100.0100.0100.0
MH0284_GL00997873172004CompleteK00772COG0005FirmicutesAcidaminococcus100.0100.0100.0
O2.UC44-1_GL00844173176557Lack 5'-endK05810COG1496unknownunknown100.0100.0100.0
O2.UC44-2_GL01607773192522CompleteK03783COG0005unknownunknown100.0100.0100.0
T2D-31A_GL01025943197374CompleteK03783COG0005Firmicutesunknown100.0100.0100.0
V1.UC41-0_GL00208473195146Lack 5'-endK05810COG1496BacteroidetesBacteroides100.0100.0100.0
556261.HMPREF0240_041103167124CompleteK03783COG0005FirmicutesClostridium100.0100.0100.0
MH0193_GL00041323170350CompleteK03783COG0005unknownunknown100.0100.0100.0
N032A_GL00307553180685Lack 5'-endK03783COG0005FirmicutesClostridium100.0100.0100.0
469613.HMPREF0864_003753183457CompleteK03815COG0005Proteobacteriaunknown100.0100.0100.0
MH0014_GL00166993184122CompleteK03815COG0005ProteobacteriaEscherichia100.0100.0100.0
MH0025_GL00828093184248CompleteK03815COG0005ProteobacteriaEscherichia100.0100.0100.0
MH0061_GL00304743184633CompleteK03783COG0005unknownunknown100.0100.0100.0
MH0097_GL00493963185043CompleteK03815COG0005ProteobacteriaEscherichia100.0100.0100.0
MH0357_GL00788653189204CompleteK03783COG0005unknownunknown100.0100.0100.0
V1.CD12-3_GL00084483193070CompleteK03783COG0005FirmicutesClostridium100.0100.0100.0
V1.FI11_GL00906723161686Lack 5'-endK03783COG0005unknownunknown100.0100.0100.0
V1.FI24_GL01547313178532CompleteK03783COG0005FirmicutesRoseburia100.0100.0100.0
V1.UC38-0_GL01084833195060Lack 5'-endK03783COG0005Firmicutesunknown100.0100.0100.0
585054.EFER_07673199310CompleteK03815COG0005ProteobacteriaEscherichia100.0100.0100.0
MH0311_GL00185483188477CompleteK03783COG0005unknownunknown100.0100.0100.0
MH0318_GL00658933188556CompleteK03783COG0005unknownunknown100.0100.0100.0
V1.CD54-0_GL00585153193735CompleteK03783COG0005FirmicutesAnaerostipes100.0100.0100.0
V1.FI14_GL00548383194113CompleteK03783COG0005unknownunknown100.0100.0100.0
V1.FI19_GL02034813161986CompleteK03783COG0005unknownunknown100.0100.0100.0
290338.CKO_003893199241CompleteK03815COG0005ProteobacteriaCitrobacter100.0100.0100.0
MH0053_GL00592953168118CompleteK03783COG0005unknownunknown100.0100.0100.0
MH0221_GL00067843187096CompleteK03783COG0005FirmicutesClostridium100.0100.0100.0
MH0277_GL00069613171872CompleteK03783COG0005unknownunknown100.0100.0100.0
MH0326_GL01522993156116CompleteK05810COG1496unknownunknown100.0100.0100.0
MH0358_GL00820913189257CompleteK03783COG0005FirmicutesClostridium100.0100.0100.0
T2D-29A_GL00974873165041Lack 5'-endK03784COG0813unknownunknown100.0100.0100.0
1006551.KOX_268003199196CompleteK03815COG0005ProteobacteriaKlebsiella100.0100.0100.0
159166850-stool1_revised3198231CompleteK03783COG0005unknownunknown100.0100.0100.0
469595.CSAG_022103199434CompleteK03815COG0005ProteobacteriaCitrobacter100.0100.0100.0
MH0358_GL00568073189248CompleteK03783COG0005unknownunknown100.0100.0100.0
MH0377_GL00350533189701CompleteK03783COG0005FirmicutesRoseburia100.0100.0100.0
DLM024_GL00053193195808CompleteK03783COG0005unknownunknown100.0100.0100.0
MH0179_GL00534323186297CompleteK03815COG0005ProteobacteriaCitrobacter100.0100.0100.0
MH0247_GL00985843187479CompleteK03815COG0005ProteobacteriaKlebsiella100.0100.0100.0
MH0260_GL01484633187705CompleteK03815COG0005ProteobacteriaKlebsiella100.0100.0100.0
MH0323_GL01424163188654CompleteK03783COG0005unknownunknown100.0100.0100.0
O2.UC41-1_GL00114483160000CompleteK05810COG1496unknownunknown100.0100.0100.0
V1.FI05_GL01293373193987CompleteK03783COG0005ActinobacteriaEggerthella100.0100.0100.0
V1.FI11_GL01173583194072Lack 5'-endK05810COG1496unknownunknown100.0100.0100.0
V1.FI17_GL01409133194273CompleteK03783COG0005unknownunknown100.0100.0100.0
V1.UC31-0_GL01203333179179CompleteK03783COG0005unknownunknown100.0100.0100.0
479437.Elen_18893199293CompleteK03783COG0005ActinobacteriaEggerthella100.0100.0100.0
764588959-stool1_revised3199054Lack 5'-endK03783COG0005BacteroidetesBacteroides100.0100.0100.0
MH0015_GL00141073167740CompleteK03783COG0005unknownunknown100.0100.0100.0
MH0016_GL00561743200173CompleteK03783COG0005BacteroidetesParabacteroides100.0100.0100.0
MH0020_GL00161013200194CompleteK03783COG0005BacteroidetesParabacteroides100.0100.0100.0
MH0006_GL00754013199835CompleteK03783COG0005unknownunknown100.0100.0100.0
MH0188_GL01131893153867CompleteK03783COG0005unknownunknown100.0100.0100.0
MH0280_GL01402483188125CompleteK05810COG1496FirmicutesMitsuokella100.0100.0100.0
MH0003_GL00518493199762CompleteK03783COG0005unknownunknown100.0100.0100.0
MH0030_GL00327683151578CompleteK05810COG1496unknownunknown100.0100.0100.0
Click on arrows to sort table data. Shift+click to sort by multiple columns.

The abundance of your query across gut microbiome samples:




The prevalence of your query across gut microbiome samples:




Taxonomic groups correlated with your query gene:

tax_level tax_name spearman_rho pvalue qvalue
speciesSubdoligranulum_unclassified-0.2691.87e-324.67e-30
genusSubdoligranulum-0.2691.98e-324.67e-30
classGammaproteobacteria0.262.94e-304.63e-28
orderEnterobacteriales0.2422.57e-262.43e-24
familyEnterobacteriaceae0.2422.57e-262.43e-24
speciesAnaerotruncus_unclassified-0.2413.82e-263.01e-24
familyRuminococcaceae-0.2398.72e-265.88e-24
phylumProteobacteria0.2391.28e-257.55e-24
genusEscherichia0.2322.42e-241.27e-22
speciesEscherichia_coli0.2263.87e-231.83e-21
speciesEubacterium_siraeum-0.2256.55e-232.81e-21
speciesAlistipes_senegalensis-0.2222.09e-228.22e-21
familyEubacteriaceae-0.2198.35e-223.03e-20
genusEubacterium-0.2199.45e-223.19e-20
classClostridia-0.2131.1e-203.24e-19
orderClostridiales-0.2131.1e-203.24e-19
genusButyrivibrio-0.2112.5e-206.94e-19
genusAnaerotruncus-0.214.57e-201.2e-18
phylumFirmicutes-0.2036.31e-191.57e-17
genusPseudoflavonifractor-0.1951.53e-173.44e-16
speciesPseudoflavonifractor_capillosus-0.1951.53e-173.44e-16
speciesLachnospiraceae_bacterium_7_1_58FAA-0.1942.39e-175.13e-16
genusKlebsiella0.191.16e-162.38e-15
genusPantoea0.1873.54e-166.68e-15
speciesPantoea_unclassified0.1873.54e-166.68e-15
familyRikenellaceae-0.1831.47e-152.57e-14
genusAlistipes-0.1831.47e-152.57e-14
speciesRuminococcus_gnavus0.1831.62e-152.73e-14
speciesKlebsiella_pneumoniae0.184.56e-157.42e-14
speciesAlistipes_shahii-0.1752.59e-144.07e-13
genusPrevotella0.1752.95e-144.49e-13
speciesCoprococcus_comes-0.1743.14e-144.59e-13
speciesMethanobrevibacter_smithii-0.1743.21e-144.59e-13
familyBacteroidales_noname-0.1735.42e-147.11e-13
genusBacteroidales_noname-0.1735.42e-147.11e-13
speciesBacteroidales_bacterium_ph8-0.1735.42e-147.11e-13
phylumEuryarchaeota-0.1719.8e-141.25e-12
genusOdoribacter-0.1711.03e-131.28e-12
genusMethanobrevibacter-0.1691.89e-132.29e-12
phylumVerrucomicrobia-0.1682.35e-132.43e-12
classVerrucomicrobiae-0.1682.35e-132.43e-12
orderVerrucomicrobiales-0.1682.35e-132.43e-12
familyVerrucomicrobiaceae-0.1682.35e-132.43e-12
genusAkkermansia-0.1682.35e-132.43e-12
speciesAkkermansia_muciniphila-0.1682.35e-132.43e-12
classMethanobacteria-0.1682.47e-132.43e-12
orderMethanobacteriales-0.1682.47e-132.43e-12
familyMethanobacteriaceae-0.1682.47e-132.43e-12
speciesMitsuokella_unclassified-0.1682.76e-132.66e-12
speciesPrevotella_copri0.1658.11e-137.66e-12
genusMitsuokella-0.1649.37e-138.67e-12
speciesOdoribacter_splanchnicus-0.163.98e-123.61e-11
speciesButyrivibrio_crossotus-0.1586.19e-125.51e-11
speciesBacteroides_uniformis-0.1586.62e-125.79e-11
genusCoprobacter-0.1561.35e-111.14e-10
speciesCoprobacter_fastidiosus-0.1561.35e-111.14e-10
speciesEubacterium_ramulus-0.1551.73e-111.43e-10
speciesEubacterium_hallii-0.1532.85e-112.32e-10
genusDesulfovibrio-0.1533.06e-112.45e-10
speciesAnaerostipes_hadrus-0.1533.36e-112.64e-10
speciesRuminococcus_obeum-0.1524.07e-113.15e-10
speciesEubacterium_rectale-0.1462.38e-101.81e-09
speciesAlistipes_putredinis-0.1453.22e-102.39e-09
speciesFusobacterium_ulcerans0.1453.24e-102.39e-09
speciesRuminococcus_lactaris-0.1444.45e-103.23e-09
genusRuminococcaceae_noname-0.1427.15e-105.04e-09
speciesRuminococcaceae_bacterium_D16-0.1427.15e-105.04e-09
speciesClostridium_ramosum0.1427.38e-105.12e-09
speciesClostridium_nexile0.1419.19e-106.29e-09
genusCoprococcus-0.141.06e-097.15e-09
speciesClostridium_leptum-0.141.09e-097.25e-09
speciesFusobacterium_varium0.141.27e-098.33e-09
speciesRoseburia_hominis-0.1391.69e-091.09e-08
speciesAlistipes_onderdonkii-0.1381.9e-091.21e-08
speciesCoprococcus_catus-0.1372.46e-091.55e-08
speciesAlistipes_indistinctus-0.1363.53e-092.19e-08
speciesCoprobacillus_unclassified0.1346.74e-094.13e-08
classBacteroidia0.1337.01e-094.17e-08
orderBacteroidales0.1337.01e-094.17e-08
phylumBacteroidetes0.1337.07e-094.17e-08
speciesLachnospiraceae_bacterium_3_1_46FAA-0.1337.93e-094.62e-08
genusCoprobacillus0.1329.41e-095.42e-08
familyFusobacteriaceae0.1292.41e-081.37e-07
phylumFusobacteria0.1282.54e-081.39e-07
classFusobacteriia0.1282.54e-081.39e-07
orderFusobacteriales0.1282.54e-081.39e-07
speciesDorea_longicatena-0.1273.17e-081.72e-07
speciesDesulfovibrio_desulfuricans-0.1273.62e-081.94e-07
speciesEnterobacter_cloacae0.1264.4e-082.33e-07
speciesBacteroides_fragilis0.1264.7e-082.46e-07
genusFusobacterium0.1256.46e-083.35e-07
familyOxalobacteraceae-0.1247.33e-083.76e-07
genusCitrobacter0.1238.72e-084.43e-07
speciesButyrivibrio_unclassified-0.1231.06e-075.32e-07
speciesMegasphaera_micronuciformis0.1221.21e-076.01e-07
speciesMethanobrevibacter_unclassified-0.1221.33e-076.54e-07
genusOxalobacter-0.1211.71e-078.24e-07
speciesOxalobacter_formigenes-0.1211.71e-078.24e-07
speciesVeillonella_parvula0.121.8e-078.58e-07
genusRuminococcus-0.1192.27e-071.07e-06
speciesOscillibacter_unclassified-0.1192.35e-071.1e-06
genusEnterobacter0.1183.05e-071.41e-06
speciesHoldemania_filiformis-0.1183.18e-071.46e-06
speciesClostridium_perfringens0.1164.59e-072.08e-06
genusVeillonella0.1164.93e-072.22e-06
genusHoldemania-0.1165.02e-072.24e-06
genusDorea-0.1165.41e-072.39e-06
speciesCitrobacter_unclassified0.1165.46e-072.39e-06
familyOscillospiraceae-0.1155.9e-072.53e-06
genusOscillibacter-0.1155.9e-072.53e-06
speciesCitrobacter_freundii0.1156.12e-072.6e-06
speciesAnaerostipes_unclassified0.1147.5e-073.16e-06
speciesVeillonella_atypica0.1131.01e-064.22e-06
speciesEscherichia_unclassified0.1121.12e-064.64e-06
genusBarnesiella-0.1121.32e-065.37e-06
speciesBarnesiella_intestinihominis-0.1121.32e-065.37e-06
genusCollinsella-0.111.97e-067.95e-06
speciesLachnospiraceae_bacterium_3_1_57FAA_CT1-0.1092.49e-069.96e-06
genusAdlercreutzia-0.1082.57e-061e-05
speciesAdlercreutzia_equolifaciens-0.1082.57e-061e-05
speciesOlsenella_unclassified-0.1082.6e-061e-05
orderCoriobacteriales-0.1082.63e-061e-05
familyCoriobacteriaceae-0.1082.63e-061e-05
speciesBacteroides_caccae-0.1082.65e-061e-05
speciesStreptococcus_anginosus0.1082.66e-061e-05
speciesCollinsella_aerofaciens-0.1064.17e-061.56e-05
speciesParaprevotella_xylaniphila-0.1064.44e-061.64e-05
genusMegasphaera0.1064.46e-061.64e-05
speciesClostridium_symbiosum0.1064.72e-061.73e-05
speciesLactobacillus_salivarius0.1055.24e-061.9e-05
speciesBifidobacterium_adolescentis-0.1029.36e-063.37e-05
speciesBacteroides_vulgatus-0.1011.22e-054.36e-05
speciesBacteroides_massiliensis-0.0991.66e-055.89e-05
speciesProteus_mirabilis0.0991.8e-056.34e-05
genusFaecalibacterium-0.0991.93e-056.7e-05
speciesFaecalibacterium_prausnitzii-0.0991.93e-056.7e-05
genusAnaerostipes-0.0991.95e-056.72e-05
genusOlsenella-0.0982.02e-056.86e-05
speciesAlistipes_finegoldii-0.0982.02e-056.86e-05
genusGordonibacter-0.0982.15e-057.2e-05
speciesGordonibacter_pamelaeae-0.0982.15e-057.2e-05
speciesDesulfovibrio_piger-0.0972.42e-058.04e-05
genusProteus0.0972.91e-059.61e-05
speciesLachnospiraceae_bacterium_9_1_43BFAA0.0963.33e-050.000109
familyPrevotellaceae0.0953.53e-050.000115
speciesVeillonella_unclassified0.0953.98e-050.000129
genusParaprevotella-0.0954.14e-050.000133
speciesBacteroides_eggerthii-0.0944.37e-050.000139
speciesParaprevotella_unclassified-0.0944.43e-050.00014
speciesLachnospiraceae_bacterium_5_1_63FAA-0.0944.54e-050.000143
speciesSubdoligranulum_sp_4_3_54A2FAA-0.0944.86e-050.000152
speciesEubacterium_ventriosum-0.0935.24e-050.000163
speciesRuminococcus_champanellensis-0.0935.73e-050.000177
speciesBacteroides_coprophilus0.0935.94e-050.000182
speciesEubacterium_eligens-0.0936.02e-050.000183
speciesBacteroides_pectinophilus-0.0926.78e-050.000205
speciesBacteroides_thetaiotaomicron0.0917.67e-050.000231
phylumActinobacteria-0.0918.78e-050.000261
classActinobacteria-0.0918.78e-050.000261
speciesErysipelotrichaceae_bacterium_21_3-0.098.9e-050.000263
speciesParaprevotella_clara-0.0890.0001190.000349
speciesClostridium_bolteae0.0890.0001230.000358
speciesRuminococcus_sp_5_1_39BFAA-0.0880.0001330.000385
orderLactobacillales0.0880.0001470.000423
genusMethanosphaera-0.0870.0001580.000449
speciesMethanosphaera_stadtmanae-0.0870.0001580.000449
speciesFusobacterium_nucleatum0.0860.000190.000537
speciesBacteroides_cellulosilyticus-0.0860.0002030.00057
speciesLachnospiraceae_bacterium_5_1_57FAA0.0860.0002090.000584
classBacilli0.0850.0002280.000633
genusWeissella0.0840.0002710.000748
speciesRuminococcus_bromii-0.0840.0002990.000818
familyEnterococcaceae0.0840.00030.000818
speciesKlebsiella_oxytoca0.0830.0003130.000849
genusEnterococcus0.0830.0003180.000858
speciesBlautia_producta0.0820.0004170.00112
speciesEnterococcus_faecalis0.0810.0004280.00114
speciesLachnospiraceae_bacterium_6_1_63FAA0.0810.0004290.00114
speciesRuminococcus_torques-0.0810.0004770.00126
speciesLachnospiraceae_bacterium_8_1_57FAA-0.080.0005340.0014
speciesParabacteroides_johnsonii-0.080.0005380.0014
speciesBifidobacterium_catenulatum-0.080.0005460.00142
speciesStreptococcus_infantarius0.080.0005740.00148
speciesClostridiales_bacterium_1_7_47FAA0.0790.000590.00151
genusMorganella0.0790.000620.00157
speciesMorganella_morganii0.0790.000620.00157
speciesDorea_unclassified-0.0790.0006690.00169
speciesVeillonella_dispar0.0780.0006810.00171
speciesKlebsiella_unclassified0.0780.000720.0018
speciesStreptococcus_mitis_oralis_pneumoniae0.0770.0008250.00205
classDeltaproteobacteria-0.0770.0008950.00219
orderDesulfovibrionales-0.0770.0008950.00219
familyDesulfovibrionaceae-0.0770.0008950.00219
speciesLactobacillus_mucosae0.0770.0009030.0022
genusLachnospiraceae_noname-0.0760.0009920.0024
speciesParabacteroides_distasonis-0.0760.001060.00255
genusButyricimonas-0.0750.001110.00265
speciesButyricimonas_synergistica-0.0750.001110.00265
speciesStreptococcus_thermophilus-0.0730.001480.00351
genusClostridium0.0730.001540.00363
familyClostridiaceae0.0730.001590.00373
speciesLachnospiraceae_bacterium_2_1_46FAA0.0720.001880.00439
familyPorphyromonadaceae-0.0720.001920.00446
speciesStreptococcus_australis0.0710.002040.00472
speciesHoldemania_unclassified-0.0710.002070.00477
speciesBifidobacterium_dentium0.070.002480.00568
speciesAlistipes_sp_HGB5-0.0690.002860.00652
speciesBacteroides_ovatus0.0690.002980.00676
familyLachnospiraceae-0.0680.003060.00691
genusPyramidobacter0.0680.003140.00702
speciesPyramidobacter_piscolens0.0680.003140.00702
speciesBacteroides_clarus-0.0680.003210.00715
speciesLactobacillus_plantarum0.0680.003460.00767
speciesEubacterium_biforme-0.0670.003930.00867
speciesEubacterium_cylindroides-0.0660.004310.00946
genusC2likevirus-0.0660.00440.00961
speciesRoseburia_unclassified-0.0650.004770.0104
speciesC2likevirus_unclassified-0.0650.004940.0107
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speciesWeissella_confusa0.0620.007130.015
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speciesBifidobacterium_longum-0.0620.007560.0156
speciesPropionibacterium_freudenreichii-0.0620.007580.0156
speciesStreptococcus_salivarius0.0620.007590.0156
speciesWeissella_cibaria0.0610.007910.0162
speciesMegasphaera_unclassified0.0610.007910.0162
speciesBacteroides_dorei-0.0610.008070.0164
speciesMegamonas_unclassified0.0610.008580.0174
speciesBlautia_hydrogenotrophica-0.0610.008690.0175
genusMegamonas0.0610.008750.0176
speciesHaemophilus_parainfluenzae0.060.009180.0184
genusStreptococcus0.060.009430.0188
speciesAlistipes_sp_AP11-0.060.010.0198
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speciesLactococcus_phage_P680-0.0590.01040.0205
genusLactobacillus0.0590.01060.0208
genusHaemophilus0.0590.01110.0216
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familyPasteurellaceae0.0590.01140.0221
speciesPrevotella_buccae0.0580.01180.0227
familyLeuconostocaceae0.0580.01190.0228
phylumSynergistetes0.0580.01210.0228
classSynergistia0.0580.01210.0228
orderSynergistales0.0580.01210.0228
familySynergistaceae0.0580.01210.0228
speciesEggerthella_unclassified0.0570.01350.0254
speciesLactococcus_garvieae0.0570.01390.026
genusCatenibacterium-0.0560.01530.0284
speciesCatenibacterium_mitsuokai-0.0560.01530.0284
familyVeillonellaceae0.0560.01550.0287
genusCoriobacteriaceae_noname-0.0560.01560.0288
familyAcidaminococcaceae-0.0560.01640.0301
speciesSutterella_wadsworthensis-0.0550.01660.0304
speciesStreptococcus_mutans0.0550.0180.0328
speciesDorea_formicigenerans-0.0550.01820.033
genusSutterella-0.0530.02070.0374
genusAcidaminococcaceae_unclassified-0.0530.02190.0395
speciesStreptococcus_lutetiensis0.0530.02260.0401
familyBacillales_noname0.0530.02270.0401
genusGemella0.0530.02270.0401
genusFlavonifractor0.0530.02270.0401
speciesFlavonifractor_plautii0.0530.02270.0401
speciesLactobacillus_vaginalis0.0520.02320.0409
genusMyoviridae_noname0.0520.02350.0412
familyMyoviridae0.0520.0240.0418
speciesCoriobacteriaceae_bacterium_phI-0.0520.0240.0418
speciesGemella_morbillorum0.0520.02420.042
speciesLactococcus_phage_936_sensu_lato-0.0510.02840.0491
speciesBacteroides_sp_2_1_22-0.050.0310.0534
speciesEnterobacteria_phage_HK5440.050.03160.0542
speciesClostridium_hathewayi0.050.03190.0546
orderViruses_noname-0.0490.03240.0552
genusParasutterella-0.0490.03260.0552
speciesParasutterella_excrementihominis-0.0490.03260.0552
familySiphoviridae-0.0490.03330.0561
genusPhascolarctobacterium-0.0490.03360.0562
speciesPhascolarctobacterium_succinatutens-0.0490.03360.0562
speciesAcidaminococcus_intestini0.0490.03410.0568
speciesPrevotella_stercorea0.0490.03420.0568
speciesKlebsiella_sp_MS_92_30.0490.03430.0568
speciesLeuconostoc_lactis0.0490.03530.0583
speciesLactobacillus_casei_paracasei-0.0480.03620.0595
speciesPeptostreptococcus_stomatis0.0480.03630.0595
genusEggerthella0.0480.03720.0608
speciesClostridium_clostridioforme0.0480.03770.0614
speciesPeptostreptococcaceae_noname_unclassified-0.0480.040.0649
speciesClostridium_citroniae0.0460.04470.0723
speciesMegamonas_funiformis0.0460.04590.0739
speciesCollinsella_intestinalis-0.0460.04820.0774
speciesParabacteroides_sp_D13-0.0450.05230.0837
speciesCollinsella_unclassified-0.0440.05570.0888
orderBacillales0.0440.0560.089
speciesBilophila_wadsworthia-0.0440.05770.0914
speciesBifidobacterium_animalis-0.0420.06770.107
speciesOdoribacter_laneus-0.0420.07110.112
speciesClostridium_asparagiforme-0.0410.07410.116
speciesClostridium_sp_ATCC_BAA_4420.0410.07460.117
speciesClostridium_sp_L2_50-0.0410.07720.12
speciesAlistipes_unclassified-0.0410.07860.122
speciesOdoribacter_unclassified-0.0410.07870.122
speciesLactobacillus_oris0.0410.07940.122
speciesBacteroides_coprocola-0.040.08140.124
genusClostridiaceae_noname-0.040.08150.124
speciesClostridiaceae_bacterium_JC118-0.040.08150.124
familyBurkholderiales_noname-0.040.08280.126
speciesTuricibacter_unclassified-0.040.08480.129
speciesLactobacillus_crispatus0.0390.08940.135
genusSolobacterium0.0390.08950.135
speciesSolobacterium_moorei0.0390.08950.135
phylumViruses_noname-0.0390.09230.138
classViruses_noname-0.0390.09230.138
speciesCampylobacter_concisus0.0390.09480.141
genusBurkholderiales_noname-0.0380.09720.144
speciesBurkholderiales_bacterium_1_1_47-0.0380.09720.144
speciesStreptococcus_pasteurianus0.0380.09950.147
speciesParabacteroides_unclassified-0.0380.1030.151
speciesClostridium_sp_KLE_17550.0370.1070.157
speciesLactobacillus_reuteri-0.0370.1090.159
speciesLactobacillus_gasseri0.0370.1110.162
genusBilophila-0.0370.1130.164
speciesBilophila_unclassified-0.0360.120.174
genusPorphyromonas-0.0350.130.187
speciesMegamonas_hypermegale0.0350.130.187
speciesStreptococcus_parasanguinis0.0350.1310.188
genusActinomyces0.0340.1380.197
genusTuricibacter-0.0340.1420.202
speciesBacteroides_nordii-0.0340.1420.202
genusParabacteroides-0.0340.1430.203
genusPeptoniphilus0.0340.1440.203
speciesLactobacillus_amylovorus0.0340.1450.204
speciesEnterococcus_faecium0.0330.150.211
genusActinobacillus0.0330.1520.212
speciesActinobacillus_unclassified0.0330.1520.212
familyActinomycetaceae0.0330.1550.215
speciesErysipelotrichaceae_bacterium_6_1_450.0330.1550.215
speciesPorphyromonas_asaccharolytica-0.0320.1630.226
genusCampylobacter0.0320.1640.226
speciesStreptococcus_gordonii0.0320.1640.226
speciesLactobacillus_delbrueckii-0.0320.1660.228
speciesAnaerotruncus_colihominis-0.0320.1690.231
speciesLachnospiraceae_bacterium_2_1_58FAA0.0310.1760.24
speciesBifidobacterium_bifidum0.030.1880.256
speciesFusobacterium_mortiferum0.030.1920.26
speciesClostridium_bartlettii0.030.20.27
speciesBacteroides_salyersiae-0.030.2020.272
familyPeptostreptococcaceae0.0290.2070.278
speciesHoldemania_sp_AP20.0290.2080.279
speciesClostridium_spiroforme-0.0290.2150.287
speciesStreptococcus_vestibularis0.0290.2160.288
genusRoseburia-0.0280.2230.296
familyCampylobacteraceae0.0280.2270.3
classErysipelotrichia-0.0280.2290.3
orderErysipelotrichales-0.0280.2290.3
familyPropionibacteriaceae-0.0280.2290.3
familyErysipelotrichaceae-0.0280.2290.3
speciesLachnospiraceae_bacterium_1_4_56FAA0.0280.2330.305
familyClostridiales_Family_XI_Incertae_Sedis0.0280.2340.305
genusPeptostreptococcaceae_noname0.0270.2350.305
speciesLactococcus_phage_jm2-0.0270.2350.305
speciesRothia_mucilaginosa0.0270.2440.316
familyViruses_noname0.0260.260.333
genusViruses_noname0.0260.260.333
genusClostridiales_noname0.0260.260.333
speciesBacteroides_salanitronis-0.0260.2640.338
genusSuccinatimonas-0.0260.2670.34
speciesSuccinatimonas_hippei-0.0260.2670.34
orderPseudomonadales-0.0260.2680.34
speciesPeptostreptococcus_anaerobius0.0250.2710.341
classEpsilonproteobacteria0.0250.2720.341
orderCampylobacterales0.0250.2720.341
speciesRuminococcus_callidus-0.0250.2720.341
orderCaudovirales-0.0250.2750.343
speciesBifidobacterium_angulatum-0.0250.2750.343
familyBacteroidaceae-0.0240.2930.363
genusBacteroides-0.0240.2930.363
speciesOscillibacter_sp_KLE_1745-0.0240.2930.363
classNegativicutes0.0230.310.382
orderSelenomonadales0.0230.310.382
speciesBacteroides_barnesiae-0.0230.3140.386
speciesStreptococcus_phage_Sfi210.0230.3150.386
speciesRuminococcus_sp_JC3040.0230.3190.39
speciesMegasphaera_elsdenii0.0230.320.39
speciesBifidobacterium_pseudocatenulatum0.0230.3250.395
familySuccinivibrionaceae-0.0230.3270.396
genusSutterellaceae_unclassified-0.0230.3270.396
speciesEnterobacter_aerogenes0.0230.3290.397
speciesAcidaminococcus_fermentans0.0220.3370.406
speciesLactococcus_lactis-0.0220.3430.412
speciesParabacteroides_merdae-0.0220.3470.416
speciesMegamonas_rupellensis0.0210.3540.423
familySutterellaceae-0.0210.3550.423
speciesLactobacillus_fermentum0.0210.3590.427
speciesPrevotella_bivia0.0210.360.427
speciesBacteroides_fluxus-0.0210.3680.435
familyMicrococcaceae0.020.3890.459
speciesCollinsella_tanakaei0.020.3920.461
speciesBacteroides_oleiciplenus0.020.3950.464
orderBurkholderiales-0.0190.3990.467
speciesStreptococcus_sanguinis0.0190.4020.47
genusRothia0.0190.4030.47
familyClostridiales_noname-0.0190.4070.473
speciesEubacterium_dolichum0.0190.4090.474
genusLeuconostoc0.0190.4110.475
speciesSlackia_piriformis-0.0190.4210.486
speciesTuricibacter_sanguinis-0.0190.4220.486
speciesDialister_invisus0.0180.4260.489
speciesEubacterium_limosum-0.0180.4420.506
speciesAggregatibacter_segnis0.0180.4470.511
speciesBacteroides_faecis0.0180.4480.511
orderActinomycetales0.0170.4570.52
speciesKlebsiella_phage_KP36-0.0170.4580.52
classBetaproteobacteria-0.0170.4660.527
speciesLactobacillus_sanfranciscensis0.0170.4670.527
speciesHaemophilus_sputorum0.0160.4770.537
genusSiphoviridae_noname-0.0160.4830.543
orderAeromonadales0.0150.5210.584
genusAggregatibacter0.0150.5230.585
speciesRoseburia_inulinivorans0.0140.5380.6
genusErysipelotrichaceae_noname-0.0140.5440.605
speciesLactococcus_phage_phi7-0.0140.5450.605
speciesLactobacillus_acidophilus-0.0140.5570.617
speciesRoseburia_intestinalis0.0130.5730.633
genusAcidaminococcus0.0130.580.64
speciesEggerthella_sp_1_3_56FAA0.0130.5860.645
speciesErysipelotrichaceae_bacterium_5_2_54FAA-0.0130.5880.645
speciesPorphyromonas_uenonis-0.0120.6130.671
speciesLachnospiraceae_bacterium_1_1_57FAA-0.0110.6230.681
speciesDialister_succinatiphilus-0.0110.6340.691
genusLactococcus-0.0110.6470.704
speciesCoprococcus_sp_ART55_1-0.010.6670.724
speciesBacteroides_xylanisolvens-0.0090.6860.743
speciesBacteroides_sp_4_3_47FAA-0.0090.6890.744
speciesErysipelotrichaceae_bacterium_3_1_530.0090.6910.745
genusTunalikevirus-0.0090.70.753
genusPropionibacterium-0.0090.7060.755
speciesBacteroides_sp_3_1_19-0.0090.7060.755
genusParvimonas0.0090.7080.755
speciesParvimonas_unclassified0.0090.7090.755
familyPodoviridae-0.0080.720.765
speciesEubacterium_sp_3_1_31-0.0080.7220.765
genusDialister0.0080.7230.765
genusStaphylococcus-0.0080.7280.769
speciesParabacteroides_sp_20_3-0.0080.7310.77
speciesBacteroides_intestinalis0.0080.7360.774
speciesHaemophilus_paraphrohaemolyticus-0.0080.740.776
genusBlautia-0.0070.7470.782
speciesAcidaminococcus_unclassified-0.0070.7670.801
speciesBacteroides_finegoldii0.0070.7730.805
speciesBacteroides_sp_1_1_60.0070.7780.809
speciesSutterella_parvirubra-0.0060.7880.817
speciesCoprobacillus_sp_D60.0060.7920.82
speciesLactobacillus_rhamnosus-0.0050.820.847
speciesOscillibacter_sp_KLE_17280.0050.8260.851
genusLambdalikevirus-0.0050.8390.863
speciesErysipelotrichaceae_bacterium_2_2_44A-0.0040.8480.87
genusButyricicoccus0.0040.8780.897
speciesButyricicoccus_pullicaecorum0.0040.8780.897
genusSlackia-0.0030.8890.906
speciesLactobacillus_ruminis0.0030.9040.918
speciesBacteroides_stercoris0.0030.9040.918
speciesEggerthella_lenta0.0020.930.942
speciesBacteroides_plebeius0.0010.9620.972
speciesLactococcus_phage_bIL670.0010.970.977
speciesMitsuokella_multacida0.0010.9710.977
speciesBifidobacterium_breve0.0010.9780.982
familyStaphylococcaceae0.0010.9820.984
speciesCoprobacillus_sp_29_10.00.9870.987
Click on arrows to sort table data. Shift+click to sort by multiple columns.

Association of query gene abundance with clinical phenotypes:

Boxplots:


Statistics:

pheno country case_n ctrl_n case_mean ctrl_mean pvalue rank percentile
Liver cirrhosisChina1201140.1322568210110.09597195077790.00137023691031778726.1581
ObesityDenmark1691230.09034338759090.07536248220190.0067314201467320346.68837
Colorectal cancerAustria64350.1178674309790.07714130526960.050241804091428759.7273
Type II diabetesDenmark752770.0744609528780.08174500939180.1684838028931205739.5221
Crohns diseaseSpain17660.08548675332030.07901435743420.2966012972661912563.591
Type II diabetesSweden53920.09292516455580.09007190449550.4583567326311517551.3884
Type II diabetesChina1831850.1354764470530.1348764861670.47534022512045267.5898
Rheumatoid arthritisChina127980.103630052490.1053076406390.8242832421472551185.0735
Ulcerative colitisSpain78660.07915197619380.07901435743420.9489355322012927696.5758
Click on arrows to sort table data. Shift+click to sort by multiple columns.

Citation:

Nayfach S, Fischbach MA, Pollard KS. MetaQuery: a web server for rapid annotation and quantitative analysis of specific genes in the human gut microbiome. Bioinformatics 2015;31(14). doi:10.1093/bioinformatics/btv382