MetaQuery: quantitative analysis of the human gut microbiome

Results

Estimated gene abundances and results from statistical analyses

Job details:

Submission date: 2021-01-24 10:08:29 PST
Job id & description: 2395, purine15
Query type: protein
Count queries & homologs: 100, 100
Min % identity & max e-value: 100%, 1e-5
Min % query & target coverage: 95%, 95%

Click here to download results

Table of contents:


Gut microbiome genes homologous to your query gene:

query_id target_id status kegg eggnog phylum genus query_cov target_cov percent_identity
MH0196_GL01845033485090Lack 5'-endK03784COG0813Firmicutesunknown100.0100.0100.0
553171.HMPREF0648_00913499280CompleteK05810COG1496BacteroidetesPrevotella100.0100.0100.0
MH0107_GL00720903483456CompleteK05810COG1496unknownunknown100.0100.0100.0
MH0270_GL01272953523241CompleteK05810COG1496FirmicutesCoprobacillus100.0100.0100.0
V1.UC11-5_GL00484863476107CompleteK00777COG2820unknownunknown100.0100.0100.0
457421.CBFG_019743499204CompleteK00772COG0005Firmicutesunknown100.0100.0100.0
T2D-148A_GL00113943496712CompleteK00772COG0005Firmicutesunknown100.0100.0100.0
V1.CD46-0_GL01186923475039Lack 5'-endK03783COG0005unknownunknown100.0100.0100.0
888057.HMPREF9064_16233555815CompleteK05810COG1496ProteobacteriaAggregatibacter100.0100.0100.0
NLF002_GL00020473477596CompleteK00777COG2820unknownunknown100.0100.0100.0
MH0047_GL00376793482548CompleteK05810COG1496unknownunknown100.0100.0100.0
MH0319_GL00033233524063CompleteK05810COG1496unknownunknown100.0100.0100.0
MH0358_GL00276693487960CompleteK03784COG0813FirmicutesClostridium100.0100.0100.0
O2.UC3-1_GL00940833491196Lack 5'-endK00777NOG09378unknownunknown100.0100.0100.0
O2.UC55-2_GL00615223474148CompleteK05810COG1496unknownunknown100.0100.0100.0
MH0030_GL00440883482335CompleteK05810COG1496unknownunknown100.0100.0100.0
V1.CD44-0_GL00392203529980Lack 5'-endK05810COG1496unknownunknown100.0100.0100.0
MH0100_GL00148003501159CompleteK05810COG1496unknownunknown100.0100.0100.0
MH0361_GL01199953488032CompleteK05810COG1496unknownunknown100.0100.0100.0
MH0057_GL00115713500519CompleteK05810COG1496unknownunknown100.0100.0100.0
MH0274_GL01413323542157CompleteK03784COG0813FirmicutesClostridium100.0100.0100.0
MH0425_GL01088843526568Lack 5'-endK03783COG0005FirmicutesFaecalibacterium100.0100.0100.0
NLM027_GL00040813551697CompleteK00777COG2820FirmicutesLactobacillus100.0100.0100.0
MH0293_GL01121293523696Lack 5'-endK03784COG0813unknownunknown100.0100.0100.0
V1.UC11-0_GL00082013568584CompleteK05810COG1496Firmicutesunknown100.0100.0100.0
1046629.Ssal_016193555318CompleteK00777NOG09378FirmicutesStreptococcus100.0100.0100.0
712961.HN6_002673555458CompleteK00777COG2820FirmicutesLactobacillus100.0100.0100.0
MH0160_GL00154383484418CompleteK05810COG1496unknownunknown100.0100.0100.0
MH0193_GL00268173521775CompleteK05810COG1496Proteobacteriaunknown100.0100.0100.0
MH0272_GL01425703542125Lack both endsK03784COG0813unknownunknown100.0100.0100.0
MH0400_GL00376283544743CompleteK00777NOG09378FirmicutesStreptococcus100.0100.0100.0
MH0433_GL02142483526837Lack 5'-endK05810COG1496unknownunknown100.0100.0100.0
MH0444_GL00579243564576CompleteK00777NOG09378unknownunknown100.0100.0100.0
V1.UC60-0_GL00776013551024Lack 5'-endK03784COG0813FirmicutesFaecalibacterium100.0100.0100.0
V1.CD37-4_GL01240793529879CompleteK00777COG2820unknownunknown100.0100.0100.0
V1.UC39-4_GL01455813531798CompleteK03784COG0813ProteobacteriaProvidencia100.0100.0100.0
1069533.Sinf_04323574092CompleteK00777COG2820FirmicutesStreptococcus100.0100.0100.0
MH0002_GL00548463481720CompleteK05810COG1496unknownunknown100.0100.0100.0
MH0019_GL00244773556436CompleteK00777COG2820unknownunknown100.0100.0100.0
MH0025_GL00375733482284CompleteK05810COG1496unknownunknown100.0100.0100.0
MH0393_GL00060653563295CompleteK00772COG0005ProteobacteriaBilophila100.0100.0100.0
MH0395_GL01950953488871CompleteK05810COG1496unknownunknown100.0100.0100.0
O2.CD1-0_GL00267203546267CompleteK00777NOG09378FirmicutesStreptococcus100.0100.0100.0
O2.UC15-1_GL00734633565337CompleteK00777NOG09378unknownunknown100.0100.0100.0
DLF005_GL00607263477176CompleteK03784COG0813unknownunknown100.0100.0100.0
MH0031_GL00411693556573CompleteK00777COG2820unknownunknown100.0100.0100.0
MH0096_GL00011553557417CompleteK00777NOG09378unknownunknown100.0100.0100.0
MH0108_GL00072913539020CompleteK00772COG0005unknownunknown100.0100.0100.0
MH0143_GL00644163539646CompleteK05810COG1496unknownunknown100.0100.0100.0
MH0239_GL01036453560186CompleteK00777COG2820unknownunknown100.0100.0100.0
O2.UC31-1_GL01791593473524Lack 5'-endK00757COG2820FirmicutesRoseburia100.0100.0100.0
V1.CD12-0_GL00242103566810CompleteK00777COG2820Firmicutesunknown100.0100.0100.0
V1.CD21-0_GL00196653548297CompleteK00777COG2820unknownunknown100.0100.0100.0
V1.FI26_GL01371693568367CompleteK00777NOG09378unknownunknown100.0100.0100.0
888833.HMPREF9961_17073574537CompleteK03784COG0813FirmicutesStreptococcus100.0100.0100.0
MH0083_GL00753083482957CompleteK05810COG1496unknownunknown100.0100.0100.0
MH0151_GL00393293558571CompleteK00777NOG09378unknownunknown100.0100.0100.0
MH0189_GL00095913559160CompleteK00777COG2820Firmicutesunknown100.0100.0100.0
MH0341_GL00161273543280CompleteK00777NOG09378FirmicutesStreptococcus100.0100.0100.0
V1.CD18-0_GL00026953566907CompleteK00777COG2820Firmicutesunknown100.0100.0100.0
V1.CD28-0_GL00334663548384Lack 5'-endK00777NOG09378BacteroidetesBacteroides100.0100.0100.0
V1.UC38-4_GL00891003569175CompleteK03784COG0813FirmicutesStreptococcus100.0100.0100.0
DOF010_GL00354553570112CompleteK00777COG2820FirmicutesStreptococcus100.0100.0100.0
MH0094_GL00102803538695CompleteK03784COG0813Firmicutesunknown100.0100.0100.0
MH0200_GL01969943559552CompleteK03784COG0813unknownunknown100.0100.0100.0
MH0457_GL02435083527420CompleteK00777NOG09378unknownunknown100.0100.0100.0
O2.CD3-0-PT_GL00826473565087CompleteK00777COG2820Firmicutesunknown100.0100.0100.0
V1.CD32-4_GL00564873548526CompleteK00777NOG09378FirmicutesStreptococcus100.0100.0100.0
MH0230_GL00737583560008CompleteK00777COG2820unknownunknown100.0100.0100.0
MH0374_GL00022403525348CompleteK05810COG1496unknownunknown100.0100.0100.0
706846339-stool1_revised3573447CompleteK00777NOG09378unknownunknown100.0100.0100.0
MH0024_GL00301903556484CompleteK00777NOG09378unknownunknown100.0100.0100.0
MH0163_GL00491313540022CompleteK03784COG0813Firmicutesunknown100.0100.0100.0
MH0396_GL00768023544654CompleteK03784COG0813Firmicutesunknown100.0100.0100.0
MH0447_GL01595093564676CompleteK00777NOG09378unknownunknown100.0100.0100.0
O2.UC7-0_GL01518593547928CompleteK00777NOG09378FirmicutesStreptococcus100.0100.0100.0
MH0398_GL00974713563400CompleteK03783COG0005Bacteroidetesunknown100.0100.0100.0
O2.CD1-0-PT_GL00624513564990CompleteK00777NOG09378unknownunknown100.0100.0100.0
T2D-123A_GL01366923534048Lack 5'-endK03783COG0005unknownunknown100.0100.0100.0
V1.CD3-0-PT_GL00139633548474CompleteK03784COG0813ProteobacteriaProteus100.0100.0100.0
V1.UC47-4_GL00375723569347CompleteK00777NOG09378unknownunknown100.0100.0100.0
MH0016_GL00525123556416CompleteK00772COG2820unknownunknown100.0100.0100.0
MH0052_GL00377803538111CompleteK03783COG0005unknownunknown100.0100.0100.0
MH0047_GL00295893556771CompleteK03783COG0005Bacteroidetesunknown100.0100.0100.0
MH0079_GL00246463538455Lack 5'-endK03784COG0813unknownunknown100.0100.0100.0
MH0181_GL00294773558930CompleteK03783COG0005Bacteroidetesunknown100.0100.0100.0
V1.FI26_GL01831893493578CompleteK05810COG1496unknownunknown100.0100.0100.0
MH0006_GL01050193574737CompleteK03783COG0005Bacteroidetesunknown100.0100.0100.0
MH0047_GL00034233556748CompleteK03783COG0005Bacteroidetesunknown100.0100.0100.0
MH0055_GL00134743556882CompleteK03783COG0005Bacteroidetesunknown100.0100.0100.0
MH0253_GL00916663560485CompleteK05810COG1496unknownunknown100.0100.0100.0
MH0411_GL01282663545067Lack 5'-endK03783COG0005unknownunknown100.0100.0100.0
O2.UC4-0_GL00008513491386CompleteK05810COG1496unknownunknown100.0100.0100.0
SZEY-39A_GL00064893571181CompleteK03783COG0005Bacteroidetesunknown100.0100.0100.0
T2D-62A_GL00604953553338Lack 5'-endK03783COG0005unknownunknown100.0100.0100.0
V1.FI36_GL00679273493707Lack 5'-endK05810COG1496unknownunknown100.0100.0100.0
MH0238_GL01101053560125CompleteK05810COG1496unknownunknown100.0100.0100.0
V1.UC26-4_GL01596473550296Lack 3'-endK03783COG0005FirmicutesPeptoniphilus100.0100.0100.0
O2.UC24-2_GL00117053565622CompleteK03783COG0005unknownunknown100.0100.0100.0
V1.FI14_GL00415063568025Lack 5'-endK03783COG0005unknownunknown100.0100.0100.0
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The abundance of your query across gut microbiome samples:




The prevalence of your query across gut microbiome samples:




Taxonomic groups correlated with your query gene:

tax_level tax_name spearman_rho pvalue qvalue
speciesRoseburia_inulinivorans0.2513.56e-281.68e-25
familyLachnospiraceae0.2422.52e-265.95e-24
genusRoseburia0.2222.84e-224.47e-20
genusStreptococcus0.2164.32e-215.1e-19
familyStreptococcaceae0.2147.15e-216.75e-19
classErysipelotrichia0.1933.15e-171.86e-15
orderErysipelotrichales0.1933.15e-171.86e-15
familyErysipelotrichaceae0.1933.15e-171.86e-15
genusDorea0.1926.07e-173.18e-15
phylumFirmicutes0.1891.7e-168.02e-15
speciesStreptococcus_salivarius0.1812.96e-151.27e-13
classBacilli0.1813.39e-151.33e-13
orderLactobacillales0.1795.32e-151.93e-13
speciesDorea_formicigenerans0.1735.07e-141.71e-12
genusErysipelotrichaceae_noname0.1711.13e-133.56e-12
speciesStreptococcus_thermophilus0.1673.21e-139.47e-12
speciesRuminococcus_obeum0.1674.02e-131.12e-11
phylumBacteroidetes-0.1631.46e-123.45e-11
classBacteroidia-0.1631.46e-123.45e-11
orderBacteroidales-0.1631.46e-123.45e-11
classClostridia0.1594.2e-129.01e-11
orderClostridiales0.1594.2e-129.01e-11
speciesDorea_longicatena0.1594.72e-129.1e-11
speciesEubacterium_hallii0.1594.76e-129.1e-11
speciesEubacterium_ramulus0.1594.82e-129.1e-11
genusAnaerostipes0.1551.4e-112.54e-10
speciesRuminococcus_torques0.1514.89e-118.55e-10
speciesStreptococcus_parasanguinis0.1391.78e-093e-08
speciesCoprococcus_comes0.1382.08e-093.39e-08
genusBlautia0.1346.28e-099.88e-08
genusLachnospiraceae_noname0.1311.2e-081.83e-07
speciesBacteroides_eggerthii0.131.6e-082.36e-07
speciesRuminococcus_sp_5_1_39BFAA0.1292.14e-083.06e-07
orderCoriobacteriales0.1255.19e-087e-07
familyCoriobacteriaceae0.1255.19e-087e-07
speciesAnaerostipes_hadrus0.1247.35e-089.64e-07
familyPeptostreptococcaceae0.1238.45e-081.08e-06
genusCoprococcus0.1221.33e-071.65e-06
familyBacteroidaceae-0.121.86e-072.19e-06
genusBacteroides-0.121.86e-072.19e-06
genusCollinsella0.1182.88e-073.32e-06
phylumEuryarchaeota0.1173.79e-074.26e-06
classDeltaproteobacteria0.1174.08e-074.28e-06
orderDesulfovibrionales0.1174.08e-074.28e-06
familyDesulfovibrionaceae0.1174.08e-074.28e-06
speciesEubacterium_biforme0.1155.64e-075.79e-06
speciesLachnospiraceae_bacterium_2_1_58FAA0.1156.06e-076.09e-06
speciesLachnospiraceae_bacterium_1_1_57FAA0.1147.57e-077.44e-06
genusPeptostreptococcaceae_noname0.1131.06e-061.02e-05
speciesCollinsella_aerofaciens0.1111.57e-061.48e-05
speciesStreptococcus_vestibularis0.1092.21e-062.05e-05
speciesLachnospiraceae_bacterium_5_1_63FAA0.1092.28e-062.07e-05
speciesErysipelotrichaceae_bacterium_21_30.1083.04e-062.71e-05
genusMethanobrevibacter0.1073.21e-062.81e-05
classMethanobacteria0.1073.78e-063.13e-05
orderMethanobacteriales0.1073.78e-063.13e-05
familyMethanobacteriaceae0.1073.78e-063.13e-05
genusCatenibacterium0.1055.06e-064.05e-05
speciesCatenibacterium_mitsuokai0.1055.06e-064.05e-05
speciesClostridium_bolteae0.1055.35e-064.21e-05
speciesBacteroides_coprocola0.1046.36e-064.92e-05
speciesMethanobrevibacter_smithii0.1046.64e-065.05e-05
speciesEubacterium_eligens0.1046.79e-065.09e-05
genusDesulfovibrio0.1037.48e-065.52e-05
speciesBilophila_unclassified0.1021.04e-057.55e-05
genusBilophila0.1011.24e-058.87e-05
familyEubacteriaceae0.1011.3e-059.16e-05
genusEubacterium0.1011.33e-059.23e-05
speciesPrevotella_copri0.11.54e-050.000105
speciesRoseburia_unclassified-0.0991.76e-050.000119
speciesRoseburia_intestinalis0.0991.91e-050.000127
speciesHoldemania_unclassified0.0982.07e-050.000136
speciesStreptococcus_mutans0.0982.15e-050.000139
speciesLactobacillus_delbrueckii0.0982.35e-050.00015
speciesOscillibacter_sp_KLE_1728-0.0962.92e-050.000184
speciesMethanobrevibacter_unclassified0.0963e-050.000186
speciesDesulfovibrio_desulfuricans0.0963.3e-050.000202
orderBacillales0.0953.89e-050.000235
speciesParabacteroides_goldsteinii0.0944.63e-050.000277
speciesBlautia_hydrogenotrophica0.0935.16e-050.000304
familyPrevotellaceae0.0926.26e-050.000365
genusPeptostreptococcus0.0927.36e-050.000422
speciesErysipelotrichaceae_bacterium_3_1_530.0917.42e-050.000422
familyClostridiales_noname0.099.66e-050.000543
speciesStreptococcus_australis0.099.77e-050.000543
phylumProteobacteria0.090.00010.000549
speciesBilophila_wadsworthia0.0890.0001080.000586
familyClostridiaceae0.0890.0001230.000654
speciesParabacteroides_johnsonii0.0890.0001250.000654
speciesLactobacillus_vaginalis0.0890.0001260.000654
speciesErysipelotrichaceae_bacterium_2_2_44A0.0890.0001260.000654
genusClostridium0.0880.0001360.000698
speciesClostridium_symbiosum0.0880.0001450.000736
genusRothia0.0880.0001470.000738
speciesCoprococcus_catus0.0880.0001510.00075
familyMicrococcaceae0.0870.000160.000787
genusPseudoflavonifractor0.0860.0001860.000896
speciesPseudoflavonifractor_capillosus0.0860.0001860.000896
speciesRothia_mucilaginosa0.0860.0001890.000901
genusPrevotella0.0860.0001930.000911
familyBacillales_noname0.0860.0002060.000953
genusGemella0.0860.0002060.000953
speciesBifidobacterium_animalis0.0860.0002130.000976
speciesBacteroides_massiliensis0.0850.0002250.00102
familyRuminococcaceae0.0840.0002630.00118
orderActinomycetales0.0840.000280.00125
speciesLachnospiraceae_bacterium_6_1_63FAA0.0830.0003130.00138
genusSolobacterium0.0820.0003610.00156
speciesSolobacterium_moorei0.0820.0003610.00156
genusFusobacterium0.0820.0003680.00158
speciesEubacterium_ventriosum0.0820.0003750.00159
speciesRoseburia_hominis0.0820.0004040.0017
speciesClostridium_bartlettii0.080.0005030.0021
speciesParaprevotella_xylaniphila0.080.0005080.0021
speciesStreptococcus_sanguinis0.080.0005350.0022
phylumViruses_noname0.080.0005530.00223
classViruses_noname0.080.0005530.00223
speciesStreptococcus_gordonii0.0790.0005880.00235
speciesStreptococcus_lutetiensis0.0790.000610.00242
genusMethanosphaera0.0780.0006820.00266
speciesMethanosphaera_stadtmanae0.0780.0006820.00266
classGammaproteobacteria0.0780.0007190.00278
genusButyrivibrio0.0780.0007640.00289
phylumFusobacteria0.0780.0007910.00289
classFusobacteriia0.0780.0007910.00289
orderFusobacteriales0.0780.0007910.00289
genusAdlercreutzia0.0780.0007910.00289
speciesAdlercreutzia_equolifaciens0.0780.0007910.00289
familyAcidaminococcaceae0.0770.00080.00289
genusFaecalibacterium0.0770.0008020.00289
speciesFaecalibacterium_prausnitzii0.0770.0008020.00289
speciesBacteroides_vulgatus-0.0770.0008090.00289
speciesPeptostreptococcaceae_noname_unclassified0.0770.0008430.00299
orderEnterobacteriales0.0770.0008620.00301
familyEnterobacteriaceae0.0770.0008620.00301
familyFusobacteriaceae0.0770.0008730.00303
orderViruses_noname0.0770.0009120.00314
genusAcidaminococcus0.0760.0009620.00329
genusAcidaminococcaceae_unclassified0.0760.001010.00343
genusRuminococcus0.0760.001060.00357
speciesBacteroides_salanitronis0.0750.00120.00401
speciesLactobacillus_gasseri0.0750.001210.00401
genusParaprevotella0.0750.001220.00401
phylumActinobacteria0.0750.001240.00401
classActinobacteria0.0750.001240.00401
speciesStreptococcus_anginosus0.0750.001240.00401
genusSubdoligranulum0.0740.001440.00462
speciesBacteroides_plebeius0.0730.001640.00523
speciesClostridium_citroniae0.0720.001780.00564
genusEscherichia0.0720.00180.00566
speciesVeillonella_parvula0.0720.001910.00597
speciesSubdoligranulum_unclassified0.0720.001960.00609
speciesParaprevotella_unclassified0.0710.001990.00614
speciesCampylobacter_concisus0.0710.002240.00687
genusHoldemania0.070.002360.00717
speciesAlistipes_indistinctus0.070.002370.00717
speciesStreptococcus_mitis_oralis_pneumoniae0.070.002620.00788
genusActinobacillus0.0690.00270.00802
speciesActinobacillus_unclassified0.0690.00270.00802
speciesLactobacillus_casei_paracasei0.0690.002740.00808
genusCoprobacillus0.0690.002870.00841
genusAnaerotruncus0.0690.002950.0086
genusLactococcus0.0690.003010.00866
genusVeillonella0.0690.003010.00866
speciesEubacterium_siraeum0.0680.003060.00875
speciesAggregatibacter_segnis0.0680.003190.00907
speciesEscherichia_coli0.0680.003230.00913
speciesDialister_succinatiphilus0.0680.00330.00927
genusEnterobacter0.0680.003420.00955
speciesAnaerotruncus_unclassified0.0670.003510.00975
speciesPrevotella_stercorea0.0670.003590.00991
genusCampylobacter0.0660.004030.0111
familyActinomycetaceae0.0660.004490.0123
speciesEubacterium_dolichum0.0660.004520.0123
genusMegasphaera0.0660.004590.0124
speciesAcidaminococcus_unclassified0.0650.005090.0137
familyCampylobacteraceae0.0650.005190.0138
genusRuminococcaceae_noname0.0640.005320.014
speciesRuminococcaceae_bacterium_D160.0640.005320.014
speciesEubacterium_cylindroides0.0640.005390.0141
speciesCoprobacillus_unclassified0.0640.005750.015
speciesBacteroides_salyersiae0.0640.005850.0152
genusActinomyces0.0630.006040.0156
speciesBlautia_producta0.0630.006150.0158
genusBarnesiella0.0630.006290.016
speciesBarnesiella_intestinihominis0.0630.006290.016
speciesClostridium_asparagiforme0.0630.006430.0162
familyOxalobacteraceae0.0630.006620.0166
speciesPrevotella_buccae0.0620.007160.0179
speciesBifidobacterium_dentium0.0620.007250.018
genusAggregatibacter0.0620.007360.0182
speciesClostridium_hathewayi0.0620.007580.0186
speciesOlsenella_unclassified0.0620.007680.0188
classEpsilonproteobacteria0.0610.008230.0199
orderCampylobacterales0.0610.008230.0199
genusCoriobacteriaceae_noname0.0610.008280.0199
speciesBacteroides_clarus0.0610.00840.0201
speciesVeillonella_unclassified0.0610.008780.0209
genusClostridiales_noname0.060.009240.0219
familyStaphylococcaceae0.060.00950.0224
speciesMegasphaera_micronuciformis0.060.009650.0227
speciesEnterobacter_cloacae0.060.009760.0228
genusLactobacillus0.060.01010.0235
speciesHaemophilus_sputorum0.0590.01090.0252
speciesRuminococcus_lactaris0.0590.0110.0253
speciesParabacteroides_sp_D13-0.0590.01130.0259
speciesCoriobacteriaceae_bacterium_phI0.0590.01140.0259
speciesBacteroides_ovatus-0.0580.01140.0259
genusOxalobacter0.0580.01160.0261
speciesOxalobacter_formigenes0.0580.01160.0261
familyLactobacillaceae0.0580.01210.0271
genusCoprobacter0.0580.01290.0286
speciesCoprobacter_fastidiosus0.0580.01290.0286
speciesButyrivibrio_crossotus0.0570.01360.03
speciesBacteroides_dorei0.0570.01380.0303
speciesGemella_morbillorum0.0570.0140.0306
speciesBacteroides_thetaiotaomicron-0.0570.01410.0307
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speciesLachnospiraceae_bacterium_7_1_58FAA0.0560.01530.033
speciesMegamonas_rupellensis0.0560.01550.0333
speciesParaprevotella_clara0.0560.01570.0335
genusFlavonifractor0.0560.01590.0337
speciesFlavonifractor_plautii0.0560.01590.0337
speciesLactococcus_lactis0.0560.0160.0337
genusOlsenella0.0550.01690.0355
speciesOdoribacter_unclassified0.0550.01730.0361
genusParasutterella0.0550.01750.0361
speciesButyrivibrio_unclassified0.0550.01750.0361
speciesParasutterella_excrementihominis0.0550.01750.0361
speciesBacteroides_faecis0.0540.01850.038
speciesLactobacillus_ruminis-0.0540.01940.0396
genusKlebsiella0.0540.01950.0397
familySutterellaceae0.0540.02010.0406
speciesPeptostreptococcus_anaerobius0.0540.02030.0406
speciesBacteroides_barnesiae0.0540.02030.0406
speciesVeillonella_atypica0.0540.02030.0406
genusCitrobacter0.0530.02130.0422
speciesAnaerostipes_unclassified0.0530.02130.0422
speciesLactobacillus_amylovorus0.0530.02170.0429
speciesKlebsiella_pneumoniae0.0530.0220.0433
speciesPeptostreptococcus_stomatis0.0530.02210.0433
speciesMegamonas_hypermegale0.0530.02240.0437
speciesMegamonas_unclassified0.0520.02380.0462
genusMegamonas0.0520.02410.0466
speciesLactococcus_phage_bIL670.0520.02480.0476
speciesDesulfovibrio_piger0.0520.02480.0476
speciesLactobacillus_salivarius0.0520.02510.048
speciesEscherichia_unclassified0.0510.0260.0495
genusLeuconostoc0.0510.02660.0502
speciesClostridium_ramosum0.0510.02660.0502
speciesStreptococcus_phage_Sfi210.0510.02680.0504
familyClostridiales_Family_XI_Incertae_Sedis0.0510.02710.0508
speciesBacteroides_finegoldii0.0510.02750.0513
genusPeptoniphilus0.0510.02850.0527
speciesCitrobacter_unclassified0.0510.02860.0527
speciesClostridiales_bacterium_1_7_47FAA0.0510.02860.0527
genusSiphoviridae_noname0.0510.02870.0527
speciesLachnospiraceae_bacterium_9_1_43BFAA0.0510.02880.0527
classNegativicutes0.050.030.0545
orderSelenomonadales0.050.030.0545
genusStaphylococcus0.050.03050.0552
speciesLactobacillus_oris0.050.03140.0566
speciesAcidaminococcus_intestini0.050.03160.0567
speciesLachnospiraceae_bacterium_3_1_46FAA0.0490.03380.0604
speciesCitrobacter_freundii0.0490.0340.0606
speciesLactococcus_garvieae0.0490.03570.0631
speciesBacteroides_coprophilus0.0490.03570.0631
speciesVeillonella_dispar0.0490.03580.0631
speciesParabacteroides_sp_20_30.0480.03740.0656
speciesBacteroides_uniformis-0.0480.03820.0668
speciesMegasphaera_unclassified0.0480.03980.0693
familyLeuconostocaceae0.0470.04250.0738
familyEnterococcaceae0.0470.04270.0738
genusGordonibacter0.0470.0430.0738
speciesGordonibacter_pamelaeae0.0470.0430.0738
speciesMitsuokella_unclassified0.0470.04380.0749
speciesFusobacterium_nucleatum0.0460.04610.0784
familyMyoviridae0.0460.04620.0784
speciesFusobacterium_mortiferum0.0460.04680.0792
genusMitsuokella0.0450.05230.0882
familySiphoviridae0.0450.05380.0904
genusC2likevirus0.0440.05510.0922
genusEnterococcus0.0440.05540.0924
speciesHoldemania_filiformis0.0430.06470.108
speciesC2likevirus_unclassified0.0430.06540.108
speciesLachnospiraceae_bacterium_1_4_56FAA0.0420.06690.11
speciesMegasphaera_elsdenii0.0420.06730.111
genusButyricicoccus0.0420.07080.116
speciesButyricicoccus_pullicaecorum0.0420.07080.116
classBetaproteobacteria0.0420.07180.117
speciesClostridium_clostridioforme0.0420.07210.117
speciesClostridium_perfringens0.0410.07280.118
speciesAlistipes_sp_AP110.0410.07650.123
speciesParvimonas_unclassified0.0410.07940.127
speciesClostridium_sp_KLE_17550.0410.07950.127
genusParvimonas0.0410.07980.127
speciesEnterococcus_faecalis0.040.0830.131
speciesBacteroides_intestinalis0.040.08310.131
familyRikenellaceae-0.040.08330.131
genusAlistipes-0.040.08330.131
speciesAlistipes_senegalensis0.0390.08780.138
speciesCoprobacillus_sp_D60.0390.09330.146
speciesWeissella_cibaria0.0390.09520.148
orderPasteurellales0.0380.09860.153
familyPasteurellaceae0.0380.09860.153
speciesBifidobacterium_bifidum0.0380.1010.156
orderBurkholderiales0.0380.1030.158
speciesBacteroides_caccae0.0380.1030.158
speciesStreptococcus_infantarius0.0370.1060.162
speciesCollinsella_intestinalis0.0370.1110.169
speciesOdoribacter_laneus0.0360.1190.18
speciesBifidobacterium_pseudocatenulatum0.0360.1190.18
genusSuccinatimonas-0.0360.1210.181
speciesSuccinatimonas_hippei-0.0360.1210.181
speciesAlistipes_sp_HGB5-0.0360.1210.181
speciesBacteroides_sp_2_1_220.0360.1240.185
genusHaemophilus0.0350.1270.189
orderBifidobacteriales0.0350.1280.189
familyBifidobacteriaceae0.0350.1280.189
speciesHaemophilus_parainfluenzae0.0350.130.192
speciesErysipelotrichaceae_bacterium_5_2_54FAA0.0350.1320.194
speciesRuminococcus_callidus0.0340.1370.2
genusButyricimonas0.0340.1380.2
speciesEubacterium_limosum0.0340.1380.2
speciesButyricimonas_synergistica0.0340.1380.2
speciesLactobacillus_crispatus0.0340.1390.201
speciesParabacteroides_distasonis0.0340.1390.201
speciesCoprococcus_sp_ART55_10.0340.1410.203
speciesDialister_invisus-0.0340.1420.204
familyVeillonellaceae0.0340.1440.206
familySuccinivibrionaceae-0.0340.1450.207
speciesLactococcus_phage_P6800.0340.1460.208
genusBifidobacterium0.0330.1480.21
familyBacteroidales_noname0.0330.1540.216
genusBacteroidales_noname0.0330.1540.216
speciesAnaerotruncus_colihominis0.0330.1540.216
speciesBacteroidales_bacterium_ph80.0330.1540.216
speciesBifidobacterium_angulatum-0.0320.160.223
speciesLactobacillus_rhamnosus0.0320.1690.235
speciesRuminococcus_champanellensis0.0310.1750.243
genusEggerthella0.0310.1770.245
speciesLactobacillus_reuteri0.0310.1780.246
speciesClostridium_sp_ATCC_BAA_4420.0310.1850.255
speciesEggerthella_unclassified0.0310.1860.255
genusClostridiaceae_noname0.030.1890.258
speciesClostridiaceae_bacterium_JC1180.030.1890.258
genusLambdalikevirus-0.030.190.258
genusOdoribacter0.030.190.258
genusParabacteroides-0.030.1920.26
genusMyoviridae_noname0.030.1960.264
speciesSutterella_wadsworthensis0.030.1990.268
orderPseudomonadales0.030.20.268
speciesLactobacillus_fermentum0.0290.2020.27
familyPorphyromonadaceae-0.0290.2050.273
speciesEnterobacter_aerogenes0.0290.2140.285
speciesLachnospiraceae_bacterium_3_1_57FAA_CT10.0280.2190.29
speciesSutterella_parvirubra-0.0280.220.291
genusMorganella0.0280.2250.296
speciesMorganella_morganii0.0280.2250.296
genusTuricibacter0.0280.2290.297
phylumVerrucomicrobia0.0280.230.297
classVerrucomicrobiae0.0280.230.297
orderVerrucomicrobiales0.0280.230.297
familyVerrucomicrobiaceae0.0280.230.297
genusAkkermansia0.0280.230.297
speciesAkkermansia_muciniphila0.0280.230.297
orderAeromonadales-0.0280.2330.3
speciesKlebsiella_unclassified0.0270.2360.303
speciesCollinsella_tanakaei0.0270.240.307
speciesKlebsiella_oxytoca0.0270.2440.311
speciesRuminococcus_bromii0.0270.2490.317
genusPropionibacterium0.0260.2560.325
speciesEnterococcus_faecium0.0260.2580.326
genusSutterellaceae_unclassified0.0260.260.328
genusBurkholderiales_noname0.0260.2690.338
speciesBurkholderiales_bacterium_1_1_470.0260.2690.338
familyBurkholderiales_noname0.0260.270.338
speciesLachnospiraceae_bacterium_5_1_57FAA0.0250.2780.347
genusPhascolarctobacterium0.0250.2870.355
speciesPhascolarctobacterium_succinatutens0.0250.2870.355
genusPantoea0.0250.2880.355
speciesPantoea_unclassified0.0250.2880.355
speciesCoprococcus_eutactus0.0250.2880.355
speciesOscillibacter_sp_KLE_17450.0240.2920.359
speciesEggerthella_sp_1_3_56FAA-0.0240.30.368
speciesTuricibacter_unclassified0.0230.310.379
speciesEubacterium_rectale0.0230.3220.393
speciesAcidaminococcus_fermentans0.0230.3260.397
speciesOdoribacter_splanchnicus0.0230.330.4
speciesDorea_unclassified-0.0230.3310.401
genusSlackia0.0220.3340.403
speciesCoprobacillus_sp_29_10.0220.3350.403
speciesPropionibacterium_freudenreichii0.0220.3380.406
genusSutterella0.0220.340.407
speciesLachnospiraceae_bacterium_8_1_57FAA0.0210.3530.422
speciesEubacterium_sp_3_1_31-0.0210.3620.431
speciesFusobacterium_varium0.0210.3650.434
speciesEnterobacteria_phage_HK5440.0210.3740.442
speciesBacteroides_sp_4_3_47FAA-0.0210.3740.442
speciesLactobacillus_mucosae0.020.3860.455
speciesLactococcus_phage_jm2-0.020.3960.465
speciesSubdoligranulum_sp_4_3_54A2FAA-0.020.3960.465
speciesBacteroides_sp_1_1_6-0.020.3980.466
speciesBifidobacterium_breve0.0190.4040.471
speciesRuminococcus_gnavus0.0190.4040.471
phylumSynergistetes-0.0190.4120.475
classSynergistia-0.0190.4120.475
orderSynergistales-0.0190.4120.475
familySynergistaceae-0.0190.4120.475
speciesAlistipes_finegoldii-0.0190.4170.48
speciesProteus_mirabilis0.0190.4190.481
speciesParabacteroides_unclassified0.0180.4460.511
speciesClostridium_nexile0.0180.4470.511
familyPodoviridae-0.0170.4510.514
speciesClostridium_leptum0.0170.4550.517
speciesLactococcus_phage_phi7-0.0170.4570.519
speciesHaemophilus_paraphrohaemolyticus0.0170.4610.522
speciesClostridium_spiroforme0.0170.4690.53
speciesAlistipes_shahii-0.0160.4780.538
speciesBifidobacterium_adolescentis0.0160.4910.552
speciesBacteroides_pectinophilus0.0160.5010.562
familyOscillospiraceae0.0150.5040.562
genusOscillibacter0.0150.5040.562
speciesMegamonas_funiformis0.0150.5110.569
speciesBacteroides_sp_3_1_19-0.0140.540.6
speciesSlackia_piriformis0.0140.550.609
genusTunalikevirus0.0140.5570.616
speciesErysipelotrichaceae_bacterium_6_1_450.0130.5610.619
speciesBacteroides_fluxus-0.0130.5630.619
genusPyramidobacter-0.0130.5850.641
speciesPyramidobacter_piscolens-0.0130.5850.641
speciesKlebsiella_phage_KP360.0120.5960.651
speciesBacteroides_stercoris-0.0120.6050.659
speciesBifidobacterium_catenulatum-0.0110.6220.676
speciesLactococcus_phage_936_sensu_lato-0.0110.6250.678
speciesAlistipes_onderdonkii-0.0110.6440.697
speciesPorphyromonas_uenonis-0.010.6660.719
familyViruses_noname0.010.6770.728
genusViruses_noname0.010.6770.728
speciesKlebsiella_sp_MS_92_30.0090.690.74
speciesOscillibacter_unclassified0.0090.6990.748
genusDialister-0.0090.7090.757
speciesBifidobacterium_longum0.0080.7190.766
speciesFusobacterium_ulcerans-0.0080.7220.766
speciesBacteroides_fragilis-0.0080.7220.766
speciesLactobacillus_acidophilus0.0080.7360.777
speciesHoldemania_sp_AP20.0080.7360.777
speciesCollinsella_unclassified-0.0070.7470.787
speciesLactobacillus_plantarum0.0070.7490.787
speciesLactobacillus_sanfranciscensis0.0070.7640.8
speciesRuminococcus_sp_JC304-0.0070.7640.8
genusWeissella0.0070.770.804
speciesLeuconostoc_lactis-0.0060.7870.82
genusProteus-0.0060.7930.824
speciesBacteroides_cellulosilyticus0.0060.8020.832
speciesBacteroides_nordii-0.0060.8110.839
speciesAlistipes_putredinis0.0050.8190.846
speciesAlistipes_unclassified0.0050.8280.852
speciesStreptococcus_pasteurianus-0.0050.8290.852
speciesBacteroides_xylanisolvens-0.0040.8530.875
speciesEggerthella_lenta0.0040.860.881
speciesPrevotella_bivia0.0040.8680.887
speciesClostridium_sp_L2_50-0.0040.8730.89
speciesLachnospiraceae_bacterium_2_1_46FAA-0.0030.8930.907
genusPorphyromonas0.0030.8940.907
familyPropionibacteriaceae0.0030.8980.908
speciesPorphyromonas_asaccharolytica-0.0030.8980.908
speciesWeissella_confusa0.0030.9070.915
speciesTuricibacter_sanguinis0.0020.9260.932
speciesParabacteroides_merdae0.0020.9410.945
speciesMitsuokella_multacida0.0010.9810.983
speciesBacteroides_oleiciplenus0.00.9930.993
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Association of query gene abundance with clinical phenotypes:

Boxplots:


Statistics:

pheno country case_n ctrl_n case_mean ctrl_mean pvalue rank percentile
Type II diabetesDenmark752770.06734939075160.04548838032320.1104463564641005132.9465
Ulcerative colitisSpain78660.07711607469690.08762825997740.2252460570431149337.9132
Liver cirrhosisChina1201140.0677939922890.08464519786240.6172670957362570486.3449
ObesityDenmark1691230.04718521228680.04266899122240.6677352893562321176.3244
Type II diabetesChina1831850.07392664844560.08362205081760.8170624723342690088.8992
Crohns diseaseSpain17660.08701011811990.08762825997740.843462789122822993.862
Colorectal cancerAustria64350.04771987710440.03823458069960.9620548541152868797.0598
Type II diabetesSweden53920.058221643920.05376751432470.9678087039372863796.976
Rheumatoid arthritisChina127980.04995975001650.05627850893980.9958799769542988299.6498
Click on arrows to sort table data. Shift+click to sort by multiple columns.

Citation:

Nayfach S, Fischbach MA, Pollard KS. MetaQuery: a web server for rapid annotation and quantitative analysis of specific genes in the human gut microbiome. Bioinformatics 2015;31(14). doi:10.1093/bioinformatics/btv382