MetaQuery: quantitative analysis of the human gut microbiome

Results

Estimated gene abundances and results from statistical analyses

Job details:

Submission date: 2021-01-26 17:03:43 PST
Job id & description: 2407, >sp|Q88VL0|AROC_LACPL Chorismate synthase OS=Lactobacillus plantarum (strain ATCC BAA-793 / NCIMB 8826 / WCFS1) OX=220668 GN=aroC PE=3 SV=1
Query type: protein
Count queries & homologs: 1, 31
Min % identity & max e-value: 50%, 1e-5
Min % query & target coverage: 70%, 70%

Click here to download results

Table of contents:


Gut microbiome genes homologous to your query gene:

query_id target_id status kegg eggnog phylum genus query_cov target_cov percent_identity
sp|Q88VL0|AROC_LACPL1757183CompleteK01736COG0082unknownunknown99.74100.072.16
sp|Q88VL0|AROC_LACPL1759304CompleteK01736COG0082FirmicutesLactobacillus100.0100.068.54
sp|Q88VL0|AROC_LACPL1626809Lack 5'-endK01736COG0082FirmicutesLactobacillus99.2396.0165.03
sp|Q88VL0|AROC_LACPL1753744CompleteK01736COG0082FirmicutesEnterococcus99.74100.053.87
sp|Q88VL0|AROC_LACPL1721255CompleteK01736COG0082FirmicutesWeissella99.74100.054.08
sp|Q88VL0|AROC_LACPL1721176CompleteK01736COG0082FirmicutesLeuconostoc99.74100.052.81
sp|Q88VL0|AROC_LACPL1808132CompleteK01736COG0082FirmicutesTuricibacter99.74100.051.16
sp|Q88VL0|AROC_LACPL1753755CompleteK01736COG0082FirmicutesEnterococcus98.298.4554.45
sp|Q88VL0|AROC_LACPL1757889CompleteK01736COG0082FirmicutesStreptococcus98.298.4550.79
sp|Q88VL0|AROC_LACPL1760618CompleteK01736COG0082FirmicutesStreptococcus99.74100.050.77
sp|Q88VL0|AROC_LACPL1721253CompleteK01736COG0082FirmicutesWeissella99.74100.052.28
sp|Q88VL0|AROC_LACPL1711467CompleteK01736COG0082Firmicutesunknown99.74100.054.82
sp|Q88VL0|AROC_LACPL3172975Lack 3'-endK01736COG0082FirmicutesLactobacillus70.4498.2165.69
sp|Q88VL0|AROC_LACPL1760351CompleteK01736COG0082FirmicutesStreptococcus99.74100.051.29
sp|Q88VL0|AROC_LACPL1756680CompleteK01736COG0082FirmicutesLactococcus99.74100.050.77
sp|Q88VL0|AROC_LACPL1760363CompleteK01736COG0082FirmicutesStreptococcus99.74100.051.03
sp|Q88VL0|AROC_LACPL1760472CompleteK01736COG0082FirmicutesStreptococcus99.74100.051.03
sp|Q88VL0|AROC_LACPL1760619CompleteK01736COG0082FirmicutesStreptococcus98.298.4551.05
sp|Q88VL0|AROC_LACPL1741154CompleteK01736COG0082Firmicutesunknown98.97100.051.41
sp|Q88VL0|AROC_LACPL1760319CompleteK01736COG0082FirmicutesStreptococcus99.74100.050.0
sp|Q88VL0|AROC_LACPL1759427CompleteK01736COG0082Firmicutesunknown99.74100.051.03
sp|Q88VL0|AROC_LACPL2212099Lack 3'-endK01736COG0082FirmicutesStreptococcus89.2100.053.89
sp|Q88VL0|AROC_LACPL1758358CompleteK01736COG0082FirmicutesStreptococcus99.74100.051.8
sp|Q88VL0|AROC_LACPL1756365CompleteK01736COG0082FirmicutesStreptococcus99.74100.051.8
sp|Q88VL0|AROC_LACPL1760424CompleteK01736COG0082FirmicutesStreptococcus99.74100.051.8
sp|Q88VL0|AROC_LACPL1755973CompleteK01736COG0082FirmicutesStreptococcus99.74100.051.8
sp|Q88VL0|AROC_LACPL1755773CompleteK01736COG0082FirmicutesStreptococcus99.74100.051.29
sp|Q88VL0|AROC_LACPL1760607CompleteK01736COG0082FirmicutesStreptococcus99.74100.050.77
sp|Q88VL0|AROC_LACPL2516576Lack 3'-endK01736COG0082unknownunknown84.32100.051.37
sp|Q88VL0|AROC_LACPL2748907Lack 3'-endK01736COG0082FirmicutesStreptococcus78.66100.050.33
sp|Q88VL0|AROC_LACPL3030691Lack 5'-endK01736COG0082FirmicutesStreptococcus73.78100.051.92
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The abundance of your query across gut microbiome samples:




The prevalence of your query across gut microbiome samples:




Taxonomic groups correlated with your query gene:

tax_level tax_name spearman_rho pvalue qvalue
classBacilli0.9120.00.0
orderLactobacillales0.9160.00.0
familyStreptococcaceae0.8610.00.0
genusStreptococcus0.8570.00.0
speciesStreptococcus_salivarius0.7590.00.0
speciesStreptococcus_parasanguinis0.6291.43e-2061.12e-204
familyLactobacillaceae0.5565.74e-1523.87e-150
genusLactobacillus0.5532.67e-1501.58e-148
speciesStreptococcus_vestibularis0.5078.16e-1234.28e-121
speciesStreptococcus_anginosus0.4912.76e-1141.3e-112
speciesStreptococcus_gordonii0.4815.86e-1092.51e-107
speciesStreptococcus_sanguinis0.4797.75e-1083.05e-106
orderActinomycetales0.4681.41e-1025.12e-101
familyMicrococcaceae0.455.93e-942e-92
genusRothia0.456.63e-942.09e-92
speciesRothia_mucilaginosa0.4442.88e-918.5e-90
speciesStreptococcus_mitis_oralis_pneumoniae0.4282.92e-848.11e-83
genusVeillonella0.4171.17e-793.07e-78
familyBacillales_noname0.4113.9e-779.2e-76
genusGemella0.4113.9e-779.2e-76
speciesStreptococcus_australis0.4071.38e-753.1e-74
familyActinomycetaceae0.4036.76e-741.45e-72
genusActinomyces0.4022.11e-734.33e-72
orderBacillales0.4013.85e-737.57e-72
phylumBacteroidetes-0.3978.83e-721.58e-70
classBacteroidia-0.3979.02e-721.58e-70
orderBacteroidales-0.3979.02e-721.58e-70
speciesBifidobacterium_dentium0.3956.26e-711.06e-69
speciesVeillonella_parvula0.3926.65e-701.08e-68
speciesStreptococcus_mutans0.3794.78e-657.52e-64
speciesVeillonella_unclassified0.3745.52e-638.4e-62
speciesVeillonella_dispar0.3641.06e-591.56e-58
phylumActinobacteria0.3632.68e-593.72e-58
classActinobacteria0.3632.68e-593.72e-58
speciesVeillonella_atypica0.3611.34e-581.81e-57
speciesStreptococcus_thermophilus0.363.25e-584.26e-57
familyPorphyromonadaceae-0.3445.9e-537.53e-52
orderBifidobacteriales0.3422.14e-522.59e-51
familyBifidobacteriaceae0.3422.14e-522.59e-51
genusBifidobacterium0.3375.16e-516.09e-50
familyEnterococcaceae0.3378.91e-511.03e-49
genusEnterococcus0.3352.61e-502.93e-49
genusBlautia0.3322.1e-492.31e-48
speciesLactobacillus_salivarius0.3291.78e-481.91e-47
speciesLactobacillus_fermentum0.3231.47e-461.54e-45
familyRikenellaceae-0.3182.44e-452.45e-44
genusAlistipes-0.3182.44e-452.45e-44
speciesMegasphaera_micronuciformis0.3131.16e-431.14e-42
speciesLactobacillus_mucosae0.3113.95e-433.8e-42
familyPeptostreptococcaceae0.3051.5e-411.42e-40
genusParabacteroides-0.33.59e-403.32e-39
speciesLactobacillus_gasseri0.2994.92e-404.47e-39
familyOscillospiraceae-0.2925.53e-384.83e-37
genusOscillibacter-0.2925.53e-384.83e-37
genusOdoribacter-0.2916.2e-385.32e-37
speciesAlistipes_shahii-0.291.93e-371.63e-36
genusPeptostreptococcaceae_noname0.2877.86e-376.51e-36
phylumFirmicutes0.2871.07e-368.71e-36
speciesLactobacillus_delbrueckii0.2862.02e-361.62e-35
speciesOdoribacter_splanchnicus-0.2852.16e-361.7e-35
speciesOscillibacter_unclassified-0.2837.6e-365.88e-35
genusSolobacterium0.2812.61e-351.96e-34
speciesSolobacterium_moorei0.2812.61e-351.96e-34
speciesBifidobacterium_longum0.284.53e-353.34e-34
familyBacteroidaceae-0.2781.44e-341.03e-33
genusBacteroides-0.2781.44e-341.03e-33
speciesFusobacterium_nucleatum0.2724e-332.82e-32
classGammaproteobacteria0.2683.68e-322.55e-31
speciesEnterococcus_faecium0.2669.1e-326.22e-31
speciesClostridium_bartlettii0.2652.37e-311.6e-30
orderPasteurellales0.2594.16e-302.73e-29
familyPasteurellaceae0.2594.16e-302.73e-29
speciesHaemophilus_parainfluenzae0.2594.93e-303.19e-29
genusHaemophilus0.2588.81e-305.62e-29
speciesCampylobacter_concisus0.2571.71e-291.08e-28
speciesBacteroides_uniformis-0.2545.47e-293.4e-28
speciesLachnospiraceae_bacterium_5_1_63FAA0.2531.01e-286.19e-28
familyLeuconostocaceae0.2522.14e-281.29e-27
speciesRuminococcus_obeum0.254.44e-282.65e-27
genusPeptostreptococcus0.2464.04e-272.38e-26
genusAnaerostipes0.2455.89e-273.43e-26
orderCoriobacteriales0.2441e-265.69e-26
familyCoriobacteriaceae0.2441e-265.69e-26
speciesCoprobacillus_unclassified0.246.93e-263.89e-25
genusCoprobacillus0.2391.07e-255.94e-25
genusAggregatibacter0.2381.55e-258.51e-25
speciesRuminococcus_sp_5_1_39BFAA0.2363.59e-251.95e-24
speciesRuminococcus_gnavus0.2341.12e-246.01e-24
speciesClostridium_ramosum0.2341.34e-247.11e-24
speciesLactobacillus_vaginalis0.2323.01e-241.58e-23
speciesEnterococcus_faecalis0.2323.29e-241.71e-23
familyVeillonellaceae0.2291.2e-236.16e-23
speciesClostridium_perfringens0.2291.22e-236.19e-23
speciesLactobacillus_rhamnosus0.2281.48e-237.43e-23
familyLachnospiraceae0.2281.51e-237.5e-23
genusActinobacillus0.2265.38e-232.62e-22
speciesActinobacillus_unclassified0.2265.38e-232.62e-22
speciesLactobacillus_oris0.2258.11e-233.91e-22
speciesLachnospiraceae_bacterium_7_1_58FAA-0.226.22e-222.97e-21
speciesAggregatibacter_segnis0.226.82e-223.22e-21
genusEggerthella0.2172.08e-219.72e-21
speciesAlistipes_putredinis-0.2154.37e-212.02e-20
genusDorea0.2155.17e-212.37e-20
orderEnterobacteriales0.2146.74e-213.03e-20
familyEnterobacteriaceae0.2146.74e-213.03e-20
genusLactococcus0.2131.43e-206.37e-20
speciesDorea_formicigenerans0.2122.25e-209.93e-20
speciesLactobacillus_casei_paracasei0.2112.55e-201.11e-19
speciesEubacterium_hallii0.214.09e-201.77e-19
speciesEggerthella_unclassified0.214.2e-201.8e-19
speciesAnaerostipes_hadrus0.2045.57e-192.37e-18
speciesPrevotella_buccae0.2045.85e-192.47e-18
genusLeuconostoc0.2036.84e-192.84e-18
orderBurkholderiales-0.2036.86e-192.84e-18
speciesAlistipes_finegoldii-0.2029.36e-193.84e-18
genusWeissella0.1993.47e-181.41e-17
speciesLactococcus_lactis0.1994.15e-181.67e-17
classDeltaproteobacteria-0.1985.67e-182.23e-17
orderDesulfovibrionales-0.1985.67e-182.23e-17
familyDesulfovibrionaceae-0.1985.67e-182.23e-17
classBetaproteobacteria-0.1951.82e-177.1e-17
speciesWeissella_cibaria0.1942.93e-171.13e-16
speciesLactobacillus_crispatus0.1943.02e-171.16e-16
familyBacteroidales_noname-0.1918.21e-173.08e-16
genusBacteroidales_noname-0.1918.21e-173.08e-16
speciesBacteroidales_bacterium_ph8-0.1918.21e-173.08e-16
speciesAlistipes_onderdonkii-0.1891.44e-165.35e-16
genusKlebsiella0.1891.76e-166.49e-16
genusEscherichia0.1891.85e-166.77e-16
genusCampylobacter0.1891.95e-167.08e-16
speciesStreptococcus_infantarius0.1882.58e-169.3e-16
speciesAlistipes_senegalensis-0.1873.04e-161.09e-15
speciesAnaerotruncus_unclassified-0.1873.44e-161.22e-15
familyCampylobacteraceae0.1873.57e-161.26e-15
classErysipelotrichia0.1865.56e-161.92e-15
orderErysipelotrichales0.1865.56e-161.92e-15
familyErysipelotrichaceae0.1865.56e-161.92e-15
speciesAlistipes_indistinctus-0.1857.9e-162.7e-15
genusLachnospiraceae_noname0.1858.26e-162.8e-15
speciesEggerthella_lenta0.1831.37e-154.62e-15
phylumFusobacteria0.1831.45e-154.79e-15
classFusobacteriia0.1831.45e-154.79e-15
orderFusobacteriales0.1831.45e-154.79e-15
speciesBifidobacterium_animalis0.1831.63e-155.34e-15
familySutterellaceae-0.1822.26e-157.36e-15
speciesHaemophilus_sputorum0.1822.44e-157.89e-15
familyFusobacteriaceae0.1822.46e-157.9e-15
genusFusobacterium0.1813.22e-151.02e-14
classEpsilonproteobacteria0.1813.23e-151.02e-14
orderCampylobacterales0.1813.23e-151.02e-14
speciesWeissella_confusa0.183.87e-151.21e-14
speciesEscherichia_coli0.1789.95e-153.09e-14
speciesRuminococcus_torques0.1771.06e-143.27e-14
speciesPeptostreptococcus_stomatis0.1771.41e-144.32e-14
genusMegasphaera0.1771.45e-144.42e-14
genusAnaerotruncus-0.1761.51e-144.57e-14
speciesParabacteroides_merdae-0.1762.05e-146.16e-14
classNegativicutes0.1743.34e-149.91e-14
orderSelenomonadales0.1743.34e-149.91e-14
speciesStreptococcus_lutetiensis0.1743.38e-149.97e-14
speciesBacteroides_vulgatus-0.171.18e-133.46e-13
genusRuminococcus0.171.26e-133.67e-13
speciesErysipelotrichaceae_bacterium_2_2_44A0.1682.52e-137.3e-13
speciesBifidobacterium_breve0.1673.68e-131.06e-12
speciesBilophila_unclassified-0.1665.5e-131.57e-12
genusBilophila-0.1665.51e-131.57e-12
genusOxalobacter-0.1648.78e-132.47e-12
speciesOxalobacter_formigenes-0.1648.78e-132.47e-12
genusEnterobacter0.1631.43e-123.99e-12
genusErysipelotrichaceae_noname0.1622.05e-125.69e-12
familyOxalobacteraceae-0.1612.14e-125.91e-12
speciesLactobacillus_plantarum0.1612.47e-126.78e-12
speciesGemella_morbillorum0.163.84e-121.05e-11
speciesKlebsiella_oxytoca0.1595.23e-121.42e-11
speciesEnterobacter_cloacae0.1542.05e-115.53e-11
speciesTuricibacter_sanguinis0.1532.85e-117.64e-11
classClostridia0.1523.61e-119.57e-11
orderClostridiales0.1523.61e-119.57e-11
speciesLactobacillus_ruminis0.156.17e-111.63e-10
familyClostridiales_Family_XI_Incertae_Sedis0.157.12e-111.87e-10
speciesClostridium_nexile0.158.02e-112.09e-10
speciesDorea_longicatena0.1499.3e-112.41e-10
speciesKlebsiella_pneumoniae0.1481.43e-103.69e-10
genusBarnesiella-0.1471.57e-104.01e-10
speciesBarnesiella_intestinihominis-0.1471.57e-104.01e-10
speciesCitrobacter_unclassified0.1471.77e-104.49e-10
genusDesulfovibrio-0.1471.79e-104.52e-10
speciesHaemophilus_paraphrohaemolyticus0.1452.85e-107.16e-10
speciesSubdoligranulum_unclassified-0.1453.08e-107.69e-10
genusSubdoligranulum-0.1443.75e-109.32e-10
speciesBacteroides_cellulosilyticus-0.1444.21e-101.04e-09
speciesLactococcus_garvieae0.1434.77e-101.17e-09
genusParasutterella-0.1435.46e-101.33e-09
speciesParasutterella_excrementihominis-0.1435.46e-101.33e-09
genusCitrobacter0.1426.98e-101.69e-09
speciesBifidobacterium_pseudocatenulatum0.1427.16e-101.72e-09
speciesLachnospiraceae_bacterium_2_1_58FAA0.1411.03e-092.47e-09
speciesBilophila_wadsworthia-0.141.31e-093.12e-09
speciesBlautia_producta0.1381.84e-094.36e-09
speciesCitrobacter_freundii0.1363.2e-097.55e-09
speciesDesulfovibrio_desulfuricans-0.1363.42e-098.03e-09
speciesKlebsiella_unclassified0.1354.45e-091.04e-08
speciesOscillibacter_sp_KLE_1745-0.1354.84e-091.13e-08
genusCollinsella0.1337.19e-091.66e-08
genusPropionibacterium0.1329.22e-092.12e-08
speciesEscherichia_unclassified0.131.69e-083.87e-08
speciesBacteroides_ovatus-0.1292.24e-085.11e-08
genusClostridium0.1292.3e-085.22e-08
speciesPropionibacterium_freudenreichii0.1282.47e-085.58e-08
genusPseudoflavonifractor-0.1282.86e-086.4e-08
speciesPseudoflavonifractor_capillosus-0.1282.86e-086.4e-08
genusButyricimonas-0.1273.39e-087.51e-08
speciesButyricimonas_synergistica-0.1273.39e-087.51e-08
speciesBifidobacterium_bifidum0.1264.99e-081.1e-07
familyClostridiaceae0.1255.76e-081.26e-07
speciesCollinsella_aerofaciens0.1255.9e-081.29e-07
familyBurkholderiales_noname-0.1247.76e-081.69e-07
speciesEubacterium_siraeum-0.1247.84e-081.7e-07
genusBurkholderiales_noname-0.1221.16e-072.49e-07
speciesBurkholderiales_bacterium_1_1_47-0.1221.16e-072.49e-07
genusOlsenella0.1211.69e-073.61e-07
speciesOscillibacter_sp_KLE_1728-0.1192.39e-075.08e-07
speciesBacteroides_thetaiotaomicron-0.1192.64e-075.59e-07
speciesBacteroides_xylanisolvens-0.1183.15e-076.64e-07
speciesBifidobacterium_catenulatum0.1174.07e-078.54e-07
speciesParvimonas_unclassified0.1174.12e-078.6e-07
genusParvimonas0.1174.23e-078.8e-07
speciesParaprevotella_xylaniphila-0.1139.24e-071.91e-06
speciesFusobacterium_mortiferum0.1111.66e-063.42e-06
genusPantoea0.111.85e-063.78e-06
speciesPantoea_unclassified0.111.85e-063.78e-06
genusTuricibacter0.1092.5e-065.06e-06
speciesParabacteroides_distasonis-0.1092.5e-065.06e-06
speciesBacteroides_caccae-0.1082.59e-065.22e-06
genusCoprobacter-0.1082.78e-065.56e-06
speciesCoprobacter_fastidiosus-0.1082.78e-065.56e-06
speciesCoprococcus_comes0.1083.07e-066.11e-06
speciesLeuconostoc_lactis0.1083.13e-066.21e-06
phylumProteobacteria0.1064.21e-068.31e-06
speciesLachnospiraceae_bacterium_5_1_57FAA0.1064.71e-069.26e-06
speciesClostridium_symbiosum0.1054.98e-069.75e-06
phylumVerrucomicrobia-0.1046.86e-061.31e-05
classVerrucomicrobiae-0.1046.86e-061.31e-05
orderVerrucomicrobiales-0.1046.86e-061.31e-05
familyVerrucomicrobiaceae-0.1046.86e-061.31e-05
genusAkkermansia-0.1046.86e-061.31e-05
speciesAkkermansia_muciniphila-0.1046.86e-061.31e-05
genusGordonibacter0.1038.94e-061.69e-05
speciesGordonibacter_pamelaeae0.1038.94e-061.69e-05
speciesBacteroides_dorei-0.1029.04e-061.71e-05
speciesAlistipes_sp_AP11-0.11.59e-052.99e-05
genusProteus0.0991.73e-053.24e-05
speciesPeptostreptococcaceae_noname_unclassified0.0991.82e-053.4e-05
genusMorganella0.0982.07e-053.83e-05
speciesMorganella_morganii0.0982.07e-053.83e-05
genusAdlercreutzia0.0982.12e-053.89e-05
speciesAdlercreutzia_equolifaciens0.0982.12e-053.89e-05
speciesCoprococcus_catus0.0972.67e-054.88e-05
speciesStreptococcus_pasteurianus0.0972.84e-055.18e-05
speciesOlsenella_unclassified0.0963.26e-055.92e-05
speciesAlistipes_sp_HGB5-0.0963.46e-056.26e-05
speciesErysipelotrichaceae_bacterium_6_1_450.0953.64e-056.56e-05
genusDialister0.0953.99e-057.16e-05
familyStaphylococcaceae0.0954.04e-057.22e-05
speciesDesulfovibrio_piger-0.0954.22e-057.52e-05
speciesLachnospiraceae_bacterium_1_1_57FAA0.0944.28e-057.59e-05
speciesBifidobacterium_adolescentis0.0935.46e-059.65e-05
genusButyrivibrio-0.0936.01e-050.000106
speciesTuricibacter_unclassified0.0926.48e-050.000114
speciesLachnospiraceae_bacterium_9_1_43BFAA0.0926.74e-050.000118
genusMegamonas0.0918.06e-050.00014
speciesRuminococcus_sp_JC3040.0918.15e-050.000141
speciesMegamonas_unclassified0.0918.2e-050.000142
speciesRoseburia_hominis-0.0918.51e-050.000147
genusStaphylococcus0.099.96e-050.000171
speciesEnterobacter_aerogenes0.0890.0001070.000182
speciesDialister_invisus0.0890.0001070.000182
speciesBlautia_hydrogenotrophica0.0890.0001110.000188
speciesLactobacillus_amylovorus0.0880.0001330.000225
familyPropionibacteriaceae0.0880.0001460.000246
genusRuminococcaceae_noname-0.0870.0001710.000286
speciesRuminococcaceae_bacterium_D16-0.0870.0001710.000286
speciesLactobacillus_reuteri0.0870.0001780.000297
speciesSutterella_wadsworthensis-0.0860.0002030.000337
speciesLachnospiraceae_bacterium_3_1_46FAA-0.0860.0002040.000338
speciesEggerthella_sp_1_3_56FAA0.0840.0002630.000434
speciesLachnospiraceae_bacterium_1_4_56FAA0.0830.0003520.000579
speciesLachnospiraceae_bacterium_6_1_63FAA0.0830.0003540.00058
genusPeptoniphilus0.0820.0003670.000599
genusCoprococcus0.0820.0004180.00068
speciesProteus_mirabilis0.080.0004940.000801
phylumViruses_noname0.080.0005020.000809
classViruses_noname0.080.0005020.000809
speciesParaprevotella_unclassified-0.080.0005170.00083
familyMyoviridae0.080.000530.000848
speciesBacteroides_clarus-0.080.0005530.000882
genusParaprevotella-0.080.0005640.000896
speciesStreptococcus_phage_Sfi210.0790.0006070.000961
genusSutterella-0.0780.0007640.00121
orderPseudomonadales0.0770.0008050.00127
speciesAnaerostipes_unclassified0.0750.001230.00193
speciesErysipelotrichaceae_bacterium_3_1_530.0740.001330.00208
speciesBacteroides_coprocola0.0730.00150.00234
speciesEubacterium_limosum0.0730.001530.00238
genusSiphoviridae_noname0.0730.001580.00245
speciesHoldemania_filiformis-0.0730.001590.00245
speciesPeptostreptococcus_anaerobius0.0710.0020.00307
speciesClostridium_hathewayi0.0710.002230.00342
speciesClostridium_bolteae0.0710.002260.00345
speciesErysipelotrichaceae_bacterium_21_30.070.002610.00397
speciesParaprevotella_clara-0.0690.002790.00423
speciesFusobacterium_ulcerans0.0670.003630.00549
speciesMethanobrevibacter_unclassified-0.0670.003740.00564
speciesDorea_unclassified-0.0670.0040.00601
familyRuminococcaceae0.0660.004080.00611
speciesParabacteroides_unclassified-0.0650.00490.00732
speciesRuminococcus_champanellensis-0.0650.004930.00734
genusHoldemania-0.0650.005250.00779
speciesBacteroides_sp_2_1_22-0.0640.00570.00843
speciesEubacterium_ramulus0.0640.005780.00853
speciesBacteroides_nordii-0.0640.0060.00882
orderCaudovirales0.0630.006280.00921
speciesParabacteroides_goldsteinii-0.0630.006540.00956
familyClostridiales_noname-0.0620.007110.0104
speciesLactobacillus_acidophilus0.0620.00740.0107
speciesBacteroides_intestinalis-0.0610.007810.0113
speciesButyrivibrio_crossotus-0.0610.008590.0124
speciesKlebsiella_sp_MS_92_30.060.009870.0142
phylumEuryarchaeota-0.0580.01240.0178
speciesButyrivibrio_unclassified-0.0570.01390.0199
speciesRuminococcus_bromii0.0570.01410.0201
genusFaecalibacterium0.0570.01450.0206
speciesFaecalibacterium_prausnitzii0.0570.01450.0206
classMethanobacteria-0.0560.01550.0218
orderMethanobacteriales-0.0560.01550.0218
familyMethanobacteriaceae-0.0560.01550.0218
speciesBacteroides_fragilis0.0560.01620.0227
speciesCoprobacillus_sp_D60.0550.01730.0242
speciesSutterella_parvirubra0.0540.01970.0274
genusFlavonifractor-0.0540.02020.028
speciesFlavonifractor_plautii-0.0540.02020.028
speciesEubacterium_sp_3_1_31-0.0520.02380.0328
orderViruses_noname0.0520.02450.0337
genusAcidaminococcaceae_unclassified-0.0520.02590.0355
familyEubacteriaceae0.0510.02680.0367
genusEubacterium0.0510.02760.0377
speciesBacteroides_massiliensis-0.0510.02840.0386
speciesFusobacterium_varium0.0510.02850.0387
genusMethanobrevibacter-0.0510.0290.0392
speciesBacteroides_plebeius0.050.02910.0392
speciesParabacteroides_sp_D13-0.050.02980.0401
speciesMethanobrevibacter_smithii-0.050.03050.0409
familyAcidaminococcaceae-0.050.03170.0424
speciesPorphyromonas_uenonis0.0490.03450.046
speciesMegamonas_hypermegale0.0480.03750.0499
speciesAnaerotruncus_colihominis-0.0470.04040.0536
genusPhascolarctobacterium-0.0460.04640.0611
speciesPhascolarctobacterium_succinatutens-0.0460.04640.0611
speciesClostridium_asparagiforme-0.0460.04650.0611
genusSlackia0.0460.04840.0635
speciesMegamonas_rupellensis0.0450.05010.0655
speciesClostridium_leptum-0.0450.05350.0698
speciesParabacteroides_johnsonii-0.0450.0540.0702
speciesLactobacillus_sanfranciscensis0.0450.05410.0702
speciesEubacterium_ventriosum-0.0440.0550.0711
genusButyricicoccus0.0440.05970.0768
speciesButyricicoccus_pullicaecorum0.0440.05970.0768
speciesBacteroides_salyersiae-0.0430.06250.0802
speciesPrevotella_stercorea0.0410.07850.1
orderAeromonadales0.0410.07980.101
familyPrevotellaceae-0.0410.07990.101
speciesMegasphaera_elsdenii0.0410.07990.101
speciesMitsuokella_unclassified-0.040.08040.102
speciesClostridiales_bacterium_1_7_47FAA0.0390.0910.115
familySiphoviridae0.0380.1030.129
speciesDialister_succinatiphilus0.0380.1030.129
speciesBacteroides_sp_1_1_6-0.0370.1050.131
genusTunalikevirus0.0370.1060.132
speciesCollinsella_unclassified-0.0370.1140.142
genusLambdalikevirus0.0360.1190.148
genusMitsuokella-0.0360.120.149
genusClostridiaceae_noname-0.0350.1250.154
speciesClostridiaceae_bacterium_JC118-0.0350.1250.154
speciesClostridium_spiroforme0.0350.1260.155
speciesBacteroides_pectinophilus-0.0350.1290.158
speciesKlebsiella_phage_KP360.0350.1340.164
speciesMegasphaera_unclassified0.0340.1380.168
speciesRoseburia_unclassified-0.0340.1450.176
speciesBacteroides_stercoris-0.0340.1470.178
speciesEnterobacteria_phage_HK5440.0330.1540.186
speciesLactococcus_phage_bIL670.0320.1690.204
genusMyoviridae_noname0.0310.1790.216
speciesLachnospiraceae_bacterium_2_1_46FAA0.0310.180.216
speciesAcidaminococcus_intestini0.0310.1830.219
speciesCoprococcus_sp_ART55_1-0.0270.240.287
genusPyramidobacter0.0270.2410.287
speciesPyramidobacter_piscolens0.0270.2410.287
speciesLactococcus_phage_936_sensu_lato-0.0270.2420.287
speciesBacteroides_faecis-0.0260.2540.3
speciesPrevotella_copri0.0250.2770.327
speciesClostridium_citroniae-0.0250.2860.337
speciesEubacterium_dolichum0.0240.2910.342
speciesClostridium_clostridioforme0.0230.3110.364
speciesCollinsella_intestinalis0.0230.3140.367
speciesLactococcus_phage_jm20.0220.3470.404
genusClostridiales_noname0.0210.3550.413
genusAcidaminococcus0.0210.360.416
phylumSynergistetes0.0210.3620.416
classSynergistia0.0210.3620.416
orderSynergistales0.0210.3620.416
familySynergistaceae0.0210.3620.416
speciesBifidobacterium_angulatum-0.0210.3720.426
speciesEubacterium_biforme0.0210.3730.426
speciesHoldemania_sp_AP2-0.0190.4130.471
speciesC2likevirus_unclassified-0.0190.4140.471
genusSutterellaceae_unclassified-0.0190.4160.472
speciesEubacterium_cylindroides0.0190.4230.479
speciesAcidaminococcus_fermentans0.0180.4450.502
speciesMitsuokella_multacida-0.0170.4550.513
speciesHoldemania_unclassified-0.0170.4650.521
speciesRoseburia_inulinivorans-0.0170.4650.521
genusPorphyromonas0.0170.4660.521
speciesClostridium_sp_L2_50-0.0170.4730.528
speciesLactococcus_phage_P6800.0160.4810.535
speciesBacteroides_finegoldii-0.0160.4870.541
speciesMegamonas_funiformis0.0160.4920.545
genusPrevotella0.0150.5160.57
genusC2likevirus-0.0150.5240.578
speciesEubacterium_eligens-0.0140.5380.592
speciesOdoribacter_unclassified-0.0140.5470.6
speciesPrevotella_bivia0.0140.5490.601
speciesBacteroides_barnesiae-0.0140.5540.605
speciesBacteroides_coprophilus0.0130.5820.634
speciesOdoribacter_laneus-0.0120.6020.655
speciesCoriobacteriaceae_bacterium_phI0.0120.6040.655
speciesAlistipes_unclassified0.0110.6320.684
genusRoseburia-0.0110.6340.685
genusCoriobacteriaceae_noname0.010.650.7
speciesClostridium_sp_KLE_17550.010.6550.704
speciesBacteroides_sp_3_1_19-0.010.6710.72
speciesRuminococcus_lactaris-0.010.6780.726
genusMethanosphaera-0.0090.690.735
speciesMethanosphaera_stadtmanae-0.0090.690.735
speciesEubacterium_rectale-0.0090.6960.74
speciesLachnospiraceae_bacterium_8_1_57FAA-0.0090.7030.746
speciesErysipelotrichaceae_bacterium_5_2_54FAA0.0080.7290.77
speciesRoseburia_intestinalis0.0080.7290.77
speciesBacteroides_salanitronis-0.0080.7330.772
speciesBacteroides_oleiciplenus-0.0080.7460.784
speciesSubdoligranulum_sp_4_3_54A2FAA0.0070.7620.799
speciesCoprobacillus_sp_29_10.0070.770.806
speciesLachnospiraceae_bacterium_3_1_57FAA_CT10.0060.7850.82
speciesCollinsella_tanakaei0.0050.830.865
speciesLactococcus_phage_phi70.0040.8630.897
familyPodoviridae-0.0040.870.903
speciesBacteroides_sp_4_3_47FAA0.0040.8760.906
speciesCoprococcus_eutactus-0.0040.8770.906
genusCatenibacterium-0.0030.8930.916
speciesSlackia_piriformis-0.0030.8930.916
speciesCatenibacterium_mitsuokai-0.0030.8930.916
speciesBacteroides_fluxus-0.0030.9010.92
genusSuccinatimonas-0.0030.9020.92
speciesSuccinatimonas_hippei-0.0030.9020.92
speciesBacteroides_eggerthii0.0020.9310.947
speciesPorphyromonas_asaccharolytica0.0020.9390.953
speciesRuminococcus_callidus0.0020.9430.955
familySuccinivibrionaceae-0.0020.9470.957
speciesAcidaminococcus_unclassified-0.0010.970.978
speciesClostridium_sp_ATCC_BAA_442-0.0010.9790.985
familyViruses_noname0.00.9940.995
genusViruses_noname0.00.9940.995
speciesParabacteroides_sp_20_30.00.9950.995
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Association of query gene abundance with clinical phenotypes:

Boxplots:


Statistics:

pheno country case_n ctrl_n case_mean ctrl_mean pvalue rank percentile
Liver cirrhosisChina1201140.01954964741590.001483625947014.91041126217e-182390.802849
Ulcerative colitisSpain78660.005292497099680.002948681994190.089843585555664421.9173
Type II diabetesChina1831850.00524772517460.004347501826070.2620254279921509149.8728
Crohns diseaseSpain17660.007741765231960.002948681994190.2786754711461876062.3774
Type II diabetesSweden53920.01448117217490.008998698641240.280320358944969132.8175
Rheumatoid arthritisChina127980.0049832623090.00458382903750.5139506923771795059.8593
Type II diabetesDenmark752770.001640674119960.001229769234210.7086909191472495581.8009
ObesityDenmark1691230.001416350459990.00113289212210.7588750937412523482.9766
Colorectal cancerAustria64350.01156272666670.01010961961980.8006436830232509384.8998
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Citation:

Nayfach S, Fischbach MA, Pollard KS. MetaQuery: a web server for rapid annotation and quantitative analysis of specific genes in the human gut microbiome. Bioinformatics 2015;31(14). doi:10.1093/bioinformatics/btv382