MetaQuery: quantitative analysis of the human gut microbiome

Results

Estimated gene abundances and results from statistical analyses

Job details:

Submission date: 2021-02-03 06:53:53 PST
Job id & description: 2410, egtA
Query type: protein
Count queries & homologs: 1, 58
Min % identity & max e-value: 30%, 1e-5
Min % query & target coverage: 70%, 70%

Click here to download results

Table of contents:


Gut microbiome genes homologous to your query gene:

query_id target_id status kegg eggnog phylum genus query_cov target_cov percent_identity
tr|A0A3N0B4D5|A0A3N0B4D5_9ACTN1407299CompleteK01919COG3572unknownunknown98.3395.7869.9
tr|A0A3N0B4D5|A0A3N0B4D5_9ACTN1524376CompleteK01919COG3572unknownunknown98.8199.7656.63
tr|A0A3N0B4D5|A0A3N0B4D5_9ACTN1395714CompleteK01919COG3572unknownunknown96.4293.9355.31
tr|A0A3N0B4D5|A0A3N0B4D5_9ACTN1337704CompleteK01919COG3572unknownunknown99.0595.1850.96
tr|A0A3N0B4D5|A0A3N0B4D5_9ACTN1012215Lack 5'-endK01919COG3572unknownunknown98.0984.7452.66
tr|A0A3N0B4D5|A0A3N0B4D5_9ACTN1410419CompleteK01919COG3572ActinobacteriaEggerthella99.5297.6653.33
tr|A0A3N0B4D5|A0A3N0B4D5_9ACTN1805269Lack 3'-endK01919COG3572Actinobacteriaunknown87.3596.0956.1
tr|A0A3N0B4D5|A0A3N0B4D5_9ACTN1996564Lack 3'-endK01919COG3572unknownunknown82.8295.6249.14
tr|A0A3N0B4D5|A0A3N0B4D5_9ACTN1548723CompleteK01919COG3572unknownunknown94.7598.5442.58
tr|A0A3N0B4D5|A0A3N0B4D5_9ACTN1513229CompleteK01919COG3572unknownunknown93.5691.0640.56
tr|A0A3N0B4D5|A0A3N0B4D5_9ACTN1375871CompleteK01919COG3572unknownunknown95.4797.6838.68
tr|A0A3N0B4D5|A0A3N0B4D5_9ACTN1549225CompleteK01919COG3572unknownunknown96.4297.836.95
tr|A0A3N0B4D5|A0A3N0B4D5_9ACTN1374520CompleteK01919COG3572unknownunknown95.4797.6839.02
tr|A0A3N0B4D5|A0A3N0B4D5_9ACTN1501953CompleteK01919COG3572FirmicutesAnaerofustis92.693.0337.69
tr|A0A3N0B4D5|A0A3N0B4D5_9ACTN1540351CompleteK01919COG3572unknownunknown94.0397.8141.36
tr|A0A3N0B4D5|A0A3N0B4D5_9ACTN1454390CompleteK01919COG3572unknownunknown90.4593.3542.14
tr|A0A3N0B4D5|A0A3N0B4D5_9ACTN1423673CompleteK01919COG3572unknownunknown89.9893.1840.81
tr|A0A3N0B4D5|A0A3N0B4D5_9ACTN1417179CompleteK01919COG3572unknownunknown92.8495.3139.61
tr|A0A3N0B4D5|A0A3N0B4D5_9ACTN1675041Lack 3'-endK01919COG3572unknownunknown76.8583.3845.07
tr|A0A3N0B4D5|A0A3N0B4D5_9ACTN1307473CompleteK01919COG3572unknownunknown95.9498.6437.13
tr|A0A3N0B4D5|A0A3N0B4D5_9ACTN1375218CompleteK01919COG3572unknownunknown78.5280.0541.16
tr|A0A3N0B4D5|A0A3N0B4D5_9ACTN1135825CompleteK01919COG3572unknownunknown85.9279.7441.18
tr|A0A3N0B4D5|A0A3N0B4D5_9ACTN1190086CompleteK01919COG3572unknownunknown85.9281.1440.91
tr|A0A3N0B4D5|A0A3N0B4D5_9ACTN1487294CompleteK01919COG3572unknownunknown91.4191.1334.2
tr|A0A3N0B4D5|A0A3N0B4D5_9ACTN1538561CompleteK01919COG3572Firmicutesunknown93.5692.2131.55
tr|A0A3N0B4D5|A0A3N0B4D5_9ACTN2423280Lack 5'-endK01919COG3572unknownunknown77.0997.5641.49
tr|A0A3N0B4D5|A0A3N0B4D5_9ACTN1487148Lack 5'-endK01919COG3572unknownunknown95.794.9634.24
tr|A0A3N0B4D5|A0A3N0B4D5_9ACTN1653950CompleteK01919COG3572unknownunknown92.1296.7334.36
tr|A0A3N0B4D5|A0A3N0B4D5_9ACTN1614299CompleteK01919COG3572Firmicutesunknown90.4593.5533.42
tr|A0A3N0B4D5|A0A3N0B4D5_9ACTN1657128CompleteK01919COG3572unknownunknown92.1296.7334.1
tr|A0A3N0B4D5|A0A3N0B4D5_9ACTN1369760CompleteK01919COG3572ActinobacteriaBifidobacterium91.1791.934.0
tr|A0A3N0B4D5|A0A3N0B4D5_9ACTN1369820CompleteK01919COG3572ActinobacteriaBifidobacterium89.0289.5833.08
tr|A0A3N0B4D5|A0A3N0B4D5_9ACTN1369707CompleteK01919COG3572ActinobacteriaBifidobacterium89.0289.5833.08
tr|A0A3N0B4D5|A0A3N0B4D5_9ACTN1400576CompleteK01919COG3572unknownunknown95.792.5233.66
tr|A0A3N0B4D5|A0A3N0B4D5_9ACTN1697089CompleteK01919COG3572unknownunknown95.2399.7532.42
tr|A0A3N0B4D5|A0A3N0B4D5_9ACTN1376109CompleteK01919COG3572ActinobacteriaBifidobacterium89.0289.7932.82
tr|A0A3N0B4D5|A0A3N0B4D5_9ACTN1424153CompleteK01919COG3572ActinobacteriaBifidobacterium91.1793.8833.08
tr|A0A3N0B4D5|A0A3N0B4D5_9ACTN1373858CompleteK01919COG3572ActinobacteriaBifidobacterium89.0289.7932.82
tr|A0A3N0B4D5|A0A3N0B4D5_9ACTN1441452CompleteK01919COG3572unknownunknown90.4592.4333.25
tr|A0A3N0B4D5|A0A3N0B4D5_9ACTN1427189CompleteK01919COG3572ActinobacteriaBifidobacterium91.1793.8832.84
tr|A0A3N0B4D5|A0A3N0B4D5_9ACTN1391145CompleteK01919COG3572ActinobacteriaBifidobacterium91.1793.0132.84
tr|A0A3N0B4D5|A0A3N0B4D5_9ACTN1374428CompleteK01919COG3572ActinobacteriaBifidobacterium89.0289.7932.31
tr|A0A3N0B4D5|A0A3N0B4D5_9ACTN1545350CompleteK01919COG3572unknownunknown91.1791.7134.2
tr|A0A3N0B4D5|A0A3N0B4D5_9ACTN1393940CompleteK01919COG3572ActinobacteriaBifidobacterium91.1793.0132.59
tr|A0A3N0B4D5|A0A3N0B4D5_9ACTN1427171CompleteK01919COG3572ActinobacteriaBifidobacterium85.288.032.35
tr|A0A3N0B4D5|A0A3N0B4D5_9ACTN1440624CompleteK01919COG3572ActinobacteriaBifidobacterium87.3589.8333.86
tr|A0A3N0B4D5|A0A3N0B4D5_9ACTN1804670Lack 5'-endK01919COG3572ActinobacteriaBifidobacterium85.6897.1333.6
tr|A0A3N0B4D5|A0A3N0B4D5_9ACTN987081CompleteK01919COG3572ActinobacteriaBifidobacterium84.0175.9232.8
tr|A0A3N0B4D5|A0A3N0B4D5_9ACTN1293118CompleteK01919COG3572FirmicutesAnaerococcus95.9490.9530.88
tr|A0A3N0B4D5|A0A3N0B4D5_9ACTN1546230CompleteK01919COG3572unknownunknown81.6282.6836.44
tr|A0A3N0B4D5|A0A3N0B4D5_9ACTN2392340Lack 3'-endK01919COG3572unknownunknown76.8597.8932.72
tr|A0A3N0B4D5|A0A3N0B4D5_9ACTN2142651Lack both endsK01919COG3572unknownunknown80.9196.0234.4
tr|A0A3N0B4D5|A0A3N0B4D5_9ACTN1886328Lack 5'-endK01919COG3572ActinobacteriaBifidobacterium80.4393.0733.24
tr|A0A3N0B4D5|A0A3N0B4D5_9ACTN1654892CompleteK01919COG3572unknownunknown85.288.9432.04
tr|A0A3N0B4D5|A0A3N0B4D5_9ACTN1032950CompleteK01919COG3572unknownunknown85.4478.7936.1
tr|A0A3N0B4D5|A0A3N0B4D5_9ACTN1576261CompleteK01919COG3572unknownunknown91.8993.1230.69
tr|A0A3N0B4D5|A0A3N0B4D5_9ACTN1541241Lack 5'-endK01919COG3572unknownunknown90.9391.2431.36
tr|A0A3N0B4D5|A0A3N0B4D5_9ACTN1223622CompleteK01919COG3572unknownunknown75.6671.6231.6
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The abundance of your query across gut microbiome samples:




The prevalence of your query across gut microbiome samples:




Taxonomic groups correlated with your query gene:

tax_level tax_name spearman_rho pvalue qvalue
phylumActinobacteria0.7960.00.0
classActinobacteria0.7960.00.0
genusBifidobacterium0.7355.2100012859e-3188.20000001423e-316
orderBifidobacteriales0.7351.77999994621e-3171.68000000219e-315
familyBifidobacteriaceae0.7351.77999994621e-3171.68000000219e-315
orderCoriobacteriales0.6451.04e-2207.01e-219
familyCoriobacteriaceae0.6451.04e-2207.01e-219
speciesBifidobacterium_longum0.6255.12e-2033.02e-201
phylumBacteroidetes-0.5974.33e-1811.92e-179
classBacteroidia-0.5974.47e-1811.92e-179
orderBacteroidales-0.5974.47e-1811.92e-179
speciesRuminococcus_obeum0.5441.06e-1444.17e-143
speciesEubacterium_hallii0.5293.7e-1351.34e-133
genusDorea0.527.73e-1302.61e-128
familyRuminococcaceae0.5192.33e-1297.33e-128
genusRuminococcus0.5122.64e-1257.79e-124
classClostridia0.4898.35e-1132.19e-111
orderClostridiales0.4898.37e-1132.19e-111
phylumFirmicutes0.4881.53e-1123.8e-111
genusCollinsella0.4731.11e-1042.62e-103
speciesRuminococcus_sp_5_1_39BFAA0.4683.06e-1026.88e-101
speciesBifidobacterium_adolescentis0.4676.99e-1021.5e-100
speciesDorea_longicatena0.4621.87e-993.84e-98
speciesCollinsella_aerofaciens0.462.17e-984.27e-97
genusAdlercreutzia0.4594.4e-987.99e-97
speciesAdlercreutzia_equolifaciens0.4594.4e-987.99e-97
speciesDorea_formicigenerans0.4443.76e-916.57e-90
genusCoprococcus0.4395.07e-898.55e-88
familyBacteroidaceae-0.4382.76e-884.34e-87
genusBacteroides-0.4382.76e-884.34e-87
speciesCoprococcus_comes0.4333.16e-864.81e-85
speciesCoprococcus_catus0.434.35e-856.42e-84
speciesAnaerostipes_hadrus0.4233.64e-825.21e-81
genusSubdoligranulum0.4171.92e-792.67e-78
speciesSubdoligranulum_unclassified0.4172.17e-792.93e-78
genusGordonibacter0.3898.99e-691.15e-67
speciesGordonibacter_pamelaeae0.3898.99e-691.15e-67
speciesLachnospiraceae_bacterium_5_1_63FAA0.3891.73e-682.15e-67
genusAnaerostipes0.3751.34e-631.62e-62
speciesEubacterium_ramulus0.3655.66e-606.68e-59
speciesClostridium_leptum0.3631.8e-592.07e-58
speciesStreptococcus_thermophilus0.3481.81e-542.03e-53
speciesRuminococcus_bromii0.3348.19e-508.99e-49
orderLactobacillales0.3282.74e-482.94e-47
classBacilli0.3279.47e-489.93e-47
familyLachnospiraceae0.3161.44e-441.48e-43
familyActinomycetaceae0.3139.38e-449.42e-43
genusActinomyces0.3113.47e-433.41e-42
familyEubacteriaceae0.3073.56e-423.43e-41
genusEubacterium0.3074.99e-424.71e-41
phylumFusobacteria-0.34.07e-403.62e-39
classFusobacteriia-0.34.07e-403.62e-39
orderFusobacteriales-0.34.07e-403.62e-39
familyFusobacteriaceae-0.2997.55e-406.6e-39
speciesBifidobacterium_catenulatum0.2963.2e-392.75e-38
speciesEggerthella_lenta0.2963.56e-393e-38
genusFusobacterium-0.2963.99e-393.3e-38
familyStreptococcaceae0.2876.53e-375.31e-36
speciesRuminococcus_torques0.2878.69e-376.95e-36
speciesBifidobacterium_bifidum0.2862e-361.57e-35
genusParabacteroides-0.2852.34e-361.81e-35
genusBlautia0.2843.74e-362.85e-35
genusStreptococcus0.2843.96e-362.97e-35
familyLactobacillaceae0.285.84e-354.31e-34
speciesBacteroides_thetaiotaomicron-0.2796.84e-354.97e-34
genusOlsenella0.2732.14e-331.53e-32
orderActinomycetales0.2724.37e-333.08e-32
genusLactobacillus0.2716.63e-334.6e-32
genusPrevotella-0.2683.56e-322.44e-31
speciesOlsenella_unclassified0.2651.75e-311.18e-30
speciesEubacterium_rectale0.2611.43e-309.51e-30
speciesFusobacterium_mortiferum-0.263.28e-302.15e-29
genusLachnospiraceae_noname0.2581e-296.47e-29
speciesPrevotella_stercorea-0.2553.09e-291.97e-28
speciesBacteroides_xylanisolvens-0.2554.37e-292.75e-28
speciesPrevotella_copri-0.2521.43e-288.88e-28
speciesStreptococcus_sanguinis0.2481.2e-277.36e-27
classBetaproteobacteria-0.248.26e-265e-25
speciesErysipelotrichaceae_bacterium_21_30.2391.35e-258.07e-25
speciesStreptococcus_salivarius0.2372.54e-251.5e-24
familySutterellaceae-0.2363.82e-252.23e-24
genusSolobacterium0.2363.92e-252.23e-24
speciesSolobacterium_moorei0.2363.92e-252.23e-24
orderBurkholderiales-0.2331.53e-248.6e-24
genusEggerthella0.236.47e-243.59e-23
familyPrevotellaceae-0.2281.68e-239.22e-23
speciesBlautia_hydrogenotrophica0.2281.87e-231.01e-22
speciesBacteroides_stercoris-0.2248.71e-234.67e-22
speciesFusobacterium_ulcerans-0.2241.08e-225.73e-22
familyPeptostreptococcaceae0.2241.15e-226.03e-22
speciesEubacterium_ventriosum0.2231.54e-227.99e-22
genusPeptostreptococcaceae_noname0.2214.4e-222.26e-21
phylumVerrucomicrobia0.226.31e-223.04e-21
classVerrucomicrobiae0.226.31e-223.04e-21
orderVerrucomicrobiales0.226.31e-223.04e-21
familyVerrucomicrobiaceae0.226.31e-223.04e-21
genusAkkermansia0.226.31e-223.04e-21
speciesAkkermansia_muciniphila0.226.31e-223.04e-21
speciesClostridium_bartlettii0.227.18e-223.42e-21
speciesBacteroides_vulgatus-0.2198.31e-223.92e-21
speciesClostridium_nexile-0.2181.75e-218.18e-21
genusDialister0.2172.06e-219.53e-21
speciesErysipelotrichaceae_bacterium_6_1_450.2162.96e-211.36e-20
speciesStreptococcus_parasanguinis0.2163.24e-211.47e-20
phylumProteobacteria-0.2163.64e-211.64e-20
familyPorphyromonadaceae-0.2155.56e-212.48e-20
genusPropionibacterium0.214.03e-201.78e-19
speciesEggerthella_unclassified0.214.66e-202.04e-19
familyBacillales_noname0.2096.78e-202.91e-19
genusGemella0.2096.78e-202.91e-19
speciesPropionibacterium_freudenreichii0.2089.82e-204.18e-19
genusLactococcus0.2081.11e-194.68e-19
speciesLactococcus_lactis0.2061.98e-198.27e-19
speciesFusobacterium_varium-0.2062.36e-199.77e-19
orderBacillales0.2062.51e-191.03e-18
speciesLachnospiraceae_bacterium_3_1_57FAA_CT10.2021.25e-185.09e-18
speciesDialister_invisus0.2011.56e-186.29e-18
classErysipelotrichia0.1994.02e-181.58e-17
orderErysipelotrichales0.1994.02e-181.58e-17
familyErysipelotrichaceae0.1994.02e-181.58e-17
speciesBifidobacterium_animalis0.1985.23e-182.04e-17
speciesEubacterium_siraeum0.1952.1e-178.12e-17
speciesKlebsiella_pneumoniae-0.1933.14e-171.2e-16
speciesLactobacillus_rhamnosus0.1924.66e-171.76e-16
speciesMethanobrevibacter_smithii0.1924.67e-171.76e-16
speciesBacteroides_plebeius-0.1918.22e-173.08e-16
speciesLactobacillus_casei_paracasei0.1918.34e-173.1e-16
speciesBacteroides_ovatus-0.1882.34e-168.63e-16
speciesHaemophilus_parainfluenzae-0.1882.66e-169.73e-16
genusMethanobrevibacter0.1882.86e-161.04e-15
genusHaemophilus-0.1874.24e-161.53e-15
orderPasteurellales-0.1865.64e-162e-15
familyPasteurellaceae-0.1865.64e-162e-15
classMethanobacteria0.1858.43e-162.93e-15
orderMethanobacteriales0.1858.43e-162.93e-15
familyMethanobacteriaceae0.1858.43e-162.93e-15
genusHoldemania0.1841.03e-153.55e-15
speciesLachnospiraceae_bacterium_3_1_46FAA0.1831.46e-154.99e-15
genusPseudoflavonifractor0.1822.57e-158.66e-15
speciesPseudoflavonifractor_capillosus0.1822.57e-158.66e-15
familyLeuconostocaceae0.1812.66e-158.9e-15
speciesLactobacillus_delbrueckii0.1795.43e-151.8e-14
speciesBifidobacterium_pseudocatenulatum0.1771.1e-143.63e-14
genusAnaerotruncus0.1761.51e-144.95e-14
phylumEuryarchaeota0.1761.58e-145.14e-14
speciesAnaerotruncus_unclassified0.1761.71e-145.53e-14
genusLeuconostoc0.1752.96e-149.5e-14
speciesBifidobacterium_dentium0.1742.99e-149.54e-14
genusEnterococcus0.1743.18e-141.01e-13
familyEnterococcaceae0.1735.61e-141.77e-13
familyPropionibacteriaceae0.1711.02e-133.19e-13
genusFaecalibacterium0.1711.04e-133.21e-13
speciesFaecalibacterium_prausnitzii0.1711.04e-133.21e-13
speciesStreptococcus_vestibularis0.171.38e-134.23e-13
speciesRuminococcus_gnavus-0.171.45e-134.42e-13
genusSutterellaceae_unclassified-0.1692.01e-136.08e-13
speciesMegamonas_unclassified-0.1673.48e-131.05e-12
genusMegamonas-0.1664.43e-131.32e-12
genusErysipelotrichaceae_noname0.1641.04e-123.09e-12
familyClostridiales_Family_XI_Incertae_Sedis0.1631.28e-123.78e-12
speciesErysipelotrichaceae_bacterium_2_2_44A0.1621.61e-124.72e-12
speciesBacteroides_massiliensis-0.162.96e-128.62e-12
speciesPrevotella_buccae-0.163.48e-121.01e-11
speciesStreptococcus_mutans0.163.63e-121.04e-11
speciesTuricibacter_sanguinis0.1594.35e-121.24e-11
familyBacteroidales_noname0.1586.06e-121.7e-11
genusBacteroidales_noname0.1586.06e-121.7e-11
speciesBacteroidales_bacterium_ph80.1586.06e-121.7e-11
genusRothia0.1586.6e-121.84e-11
familyMicrococcaceae0.1587.15e-121.99e-11
genusTuricibacter0.1577.73e-122.13e-11
speciesAlistipes_sp_AP110.1578.16e-122.24e-11
genusKlebsiella-0.1561.15e-113.14e-11
speciesEnterococcus_faecium0.1561.19e-113.23e-11
speciesHoldemania_filiformis0.1551.54e-114.15e-11
speciesStreptococcus_gordonii0.1532.68e-117.19e-11
speciesStreptococcus_australis0.1532.76e-117.36e-11
speciesRoseburia_hominis0.1523.91e-111.04e-10
speciesRuminococcus_lactaris0.1498.55e-112.25e-10
speciesEubacterium_cylindroides0.1481.12e-102.94e-10
speciesParabacteroides_unclassified-0.1481.27e-103.31e-10
speciesBacteroides_nordii-0.1471.48e-103.84e-10
speciesLactobacillus_gasseri0.1462.52e-106.5e-10
speciesRothia_mucilaginosa0.1452.63e-106.75e-10
speciesTuricibacter_unclassified0.1452.67e-106.81e-10
genusButyricimonas-0.1444.01e-101.01e-09
speciesButyricimonas_synergistica-0.1444.01e-101.01e-09
speciesRuminococcus_sp_JC3040.1444.09e-101.03e-09
speciesClostridiales_bacterium_1_7_47FAA-0.1435.91e-101.48e-09
speciesMitsuokella_unclassified0.1426.76e-101.68e-09
speciesOdoribacter_splanchnicus-0.1427.65e-101.89e-09
speciesParabacteroides_distasonis-0.1411.04e-092.56e-09
speciesLactobacillus_plantarum0.141.1e-092.69e-09
genusMitsuokella0.141.18e-092.87e-09
speciesParabacteroides_goldsteinii-0.141.34e-093.24e-09
speciesCoprococcus_sp_ART55_10.1391.49e-093.59e-09
speciesSubdoligranulum_sp_4_3_54A2FAA0.1391.53e-093.67e-09
speciesMegamonas_rupellensis-0.1391.59e-093.79e-09
genusRuminococcaceae_noname0.1391.75e-094.13e-09
speciesRuminococcaceae_bacterium_D160.1391.75e-094.13e-09
classGammaproteobacteria-0.1373.07e-097.21e-09
speciesBacteroides_faecis-0.1363.23e-097.55e-09
genusSiphoviridae_noname0.1363.27e-097.6e-09
genusBarnesiella0.1363.53e-098.13e-09
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genusOdoribacter-0.1345.59e-091.26e-08
speciesBacteroides_salyersiae-0.1329.79e-092.2e-08
speciesBacteroides_finegoldii-0.1329.88e-092.21e-08
speciesLachnospiraceae_bacterium_9_1_43BFAA-0.1311.26e-082.81e-08
speciesLachnospiraceae_bacterium_1_1_57FAA0.1292.1e-084.65e-08
familySiphoviridae0.1273.24e-087.15e-08
speciesDorea_unclassified-0.1273.26e-087.16e-08
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phylumViruses_noname0.1255.42e-081.17e-07
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speciesBacteroides_fragilis-0.1238.83e-081.89e-07
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speciesBacteroides_intestinalis-0.1221.34e-072.84e-07
genusPorphyromonas0.1192.26e-074.76e-07
speciesLactococcus_phage_P6800.1192.47e-075.18e-07
speciesGemella_morbillorum0.1192.62e-075.47e-07
speciesBacteroides_caccae-0.1192.66e-075.53e-07
speciesBacteroides_coprocola-0.1173.87e-078.01e-07
speciesMegamonas_funiformis-0.1174.05e-078.35e-07
speciesMegamonas_hypermegale-0.1165.05e-071.04e-06
speciesRuminococcus_callidus0.1156.46e-071.32e-06
speciesPeptostreptococcaceae_noname_unclassified0.1146.97e-071.42e-06
genusAggregatibacter-0.1139.63e-071.95e-06
speciesLachnospiraceae_bacterium_7_1_58FAA0.1121.18e-062.38e-06
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speciesLachnospiraceae_bacterium_2_1_46FAA-0.1082.69e-065.38e-06
speciesVeillonella_dispar-0.1082.98e-065.93e-06
genusParasutterella-0.1083.03e-065.98e-06
speciesParasutterella_excrementihominis-0.1083.03e-065.98e-06
speciesVeillonella_unclassified-0.1073.25e-066.39e-06
speciesLactobacillus_sanfranciscensis0.1073.86e-067.56e-06
speciesPorphyromonas_asaccharolytica0.1064.78e-069.32e-06
speciesAnaerostipes_unclassified-0.1046.13e-061.19e-05
genusMegasphaera-0.1046.41e-061.24e-05
speciesCoriobacteriaceae_bacterium_phI0.1047.21e-061.39e-05
genusCoriobacteriaceae_noname0.1038.02e-061.54e-05
speciesCampylobacter_concisus-0.1038.59e-061.64e-05
speciesBacteroides_oleiciplenus-0.1038.63e-061.64e-05
speciesEubacterium_limosum0.1038.65e-061.64e-05
speciesClostridium_symbiosum-0.1029.39e-061.77e-05
speciesButyrivibrio_unclassified0.1029.65e-061.81e-05
genusClostridiales_noname-0.1021.02e-051.91e-05
speciesVeillonella_atypica-0.1021.06e-051.98e-05
speciesMethanobrevibacter_unclassified0.1011.13e-052.1e-05
genusFlavonifractor-0.11.35e-052.48e-05
speciesLachnospiraceae_bacterium_6_1_63FAA-0.11.35e-052.48e-05
speciesFlavonifractor_plautii-0.11.35e-052.48e-05
genusActinobacillus-0.11.54e-052.81e-05
speciesActinobacillus_unclassified-0.11.54e-052.81e-05
genusVeillonella-0.0982e-053.63e-05
orderCaudovirales0.0982.29e-054.14e-05
speciesEggerthella_sp_1_3_56FAA0.0972.57e-054.63e-05
speciesParabacteroides_merdae-0.0972.89e-055.19e-05
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classDeltaproteobacteria-0.0944.36e-057.71e-05
orderDesulfovibrionales-0.0944.36e-057.71e-05
familyDesulfovibrionaceae-0.0944.36e-057.71e-05
speciesAggregatibacter_segnis-0.0944.47e-057.87e-05
speciesParabacteroides_johnsonii-0.0944.57e-058.02e-05
speciesPeptostreptococcus_anaerobius0.0935.47e-059.56e-05
speciesClostridium_spiroforme0.0935.99e-050.000104
genusPantoea-0.0927.36e-050.000127
speciesPantoea_unclassified-0.0927.36e-050.000127
speciesBilophila_unclassified-0.0918.34e-050.000144
speciesBacteroides_dorei-0.0918.78e-050.000151
genusButyrivibrio0.099.2e-050.000157
genusPeptostreptococcus0.090.0001030.000176
genusBilophila-0.0870.0001580.000268
speciesAnaerotruncus_colihominis0.0870.0001630.000276
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familyEnterobacteriaceae-0.0860.0001870.000314
speciesEscherichia_coli-0.0860.0001910.00032
speciesLactobacillus_amylovorus0.0840.0002610.000435
speciesBacteroides_clarus-0.0830.000330.000548
speciesClostridium_citroniae-0.0820.0003940.000653
speciesClostridium_sp_L2_500.0810.0004330.000715
genusEnterobacter-0.080.000540.000888
speciesCoprococcus_eutactus0.080.0005540.000908
genusEscherichia-0.080.0005690.000929
speciesStreptococcus_mitis_oralis_pneumoniae0.080.0005730.000933
genusWeissella0.0790.0005920.00096
genusPeptoniphilus0.0780.0006910.00112
speciesEnterobacter_cloacae-0.0780.0007790.00125
speciesCoprobacillus_sp_D60.0770.0008050.00129
speciesOdoribacter_laneus0.0770.0008450.00135
genusMethanosphaera0.0760.0009850.00157
speciesMethanosphaera_stadtmanae0.0760.0009850.00157
speciesVeillonella_parvula-0.0760.001050.00166
speciesRoseburia_unclassified0.0750.001090.00172
genusBurkholderiales_noname-0.0740.001280.00201
speciesBurkholderiales_bacterium_1_1_47-0.0740.001280.00201
familyBurkholderiales_noname-0.0740.00140.00219
genusC2likevirus0.0740.001450.00226
speciesC2likevirus_unclassified0.0730.001580.00245
speciesBacteroides_uniformis-0.0730.001620.00251
speciesEnterococcus_faecalis0.0730.001650.00255
speciesEubacterium_biforme0.0710.001980.00304
speciesWeissella_confusa0.0710.002250.00345
speciesParaprevotella_xylaniphila-0.0690.002830.00432
speciesDialister_succinatiphilus0.0670.003560.00542
classEpsilonproteobacteria-0.0670.00380.00575
orderCampylobacterales-0.0670.00380.00575
genusStaphylococcus0.0660.004560.00688
speciesBacteroides_pectinophilus0.0650.004910.00738
genusCampylobacter-0.0650.004990.00748
speciesHaemophilus_paraphrohaemolyticus-0.0640.005420.0081
genusMorganella-0.0640.005540.00822
speciesMorganella_morganii-0.0640.005540.00822
familyCampylobacteraceae-0.0630.006020.00891
orderViruses_noname0.0620.006930.0102
speciesStreptococcus_pasteurianus-0.0610.007840.0115
speciesClostridium_hathewayi-0.0610.008450.0124
speciesClostridium_perfringens-0.0610.008660.0127
speciesBacteroides_eggerthii-0.0610.008770.0128
speciesOscillibacter_sp_KLE_1728-0.060.009320.0135
speciesClostridium_clostridioforme-0.060.009450.0137
speciesPorphyromonas_uenonis0.060.009760.0141
speciesBacteroides_cellulosilyticus-0.0590.01040.015
speciesWeissella_cibaria0.0580.01190.0171
speciesAlistipes_onderdonkii0.0580.01250.0179
familyStaphylococcaceae0.0570.01350.0193
speciesLactobacillus_mucosae0.0560.01470.0209
familyClostridiaceae-0.0560.01530.0217
familyMyoviridae-0.0560.01560.022
speciesLactobacillus_fermentum0.0560.01580.0223
speciesAlistipes_senegalensis0.0560.01620.0228
speciesErysipelotrichaceae_bacterium_3_1_530.0550.01640.023
speciesBacteroides_coprophilus-0.0550.01680.0235
speciesLachnospiraceae_bacterium_5_1_57FAA0.0550.01690.0235
speciesPeptostreptococcus_stomatis0.0540.01860.0258
speciesLactococcus_phage_jm20.0540.01920.0266
genusCoprobacter0.0540.01940.0267
speciesCoprobacter_fastidiosus0.0540.01940.0267
speciesCoprobacillus_unclassified-0.0540.01960.0269
genusClostridium-0.0540.02050.028
speciesLactobacillus_ruminis0.0540.02070.0282
speciesLactococcus_phage_phi70.0530.0220.0299
speciesLactobacillus_vaginalis0.0530.02230.0302
speciesCollinsella_tanakaei-0.0520.02390.0323
familyClostridiales_noname-0.0510.02690.0363
speciesClostridium_sp_ATCC_BAA_442-0.0510.02750.037
speciesFusobacterium_nucleatum-0.0510.02850.0382
speciesEnterobacter_aerogenes-0.0510.02870.0384
speciesRoseburia_intestinalis0.050.03070.0409
speciesClostridium_ramosum-0.0470.04170.0554
genusParaprevotella-0.0470.04210.0558
speciesStreptococcus_infantarius-0.0470.04240.0561
speciesBifidobacterium_angulatum0.0460.04480.0591
speciesDesulfovibrio_piger-0.0460.04560.06
speciesLactobacillus_crispatus0.0460.04870.0639
genusLambdalikevirus0.0450.05410.0707
speciesLachnospiraceae_bacterium_1_4_56FAA0.0440.05520.072
speciesParaprevotella_unclassified-0.0440.05680.0739
speciesCitrobacter_freundii-0.0440.05720.0742
speciesCoprobacillus_sp_29_10.0430.06490.0839
speciesAcidaminococcus_unclassified0.0420.06660.0859
speciesAlistipes_shahii-0.0420.06680.0859
speciesMegasphaera_elsdenii0.0420.06960.0893
speciesBilophila_wadsworthia-0.0420.07020.0898
speciesBlautia_producta0.0410.07860.1
orderAeromonadales-0.040.08410.107
speciesMegasphaera_unclassified-0.040.08410.107
speciesCollinsella_intestinalis-0.040.08630.109
speciesLactobacillus_reuteri0.040.08650.109
speciesAlistipes_unclassified0.040.08660.109
speciesEnterobacteria_phage_HK544-0.0390.09180.115
speciesParaprevotella_clara-0.0390.09250.116
speciesErysipelotrichaceae_bacterium_5_2_54FAA0.0380.1020.127
speciesLachnospiraceae_bacterium_8_1_57FAA0.0380.1040.13
genusAcidaminococcus0.0370.1060.132
speciesClostridium_asparagiforme-0.0370.1080.134
speciesRoseburia_inulinivorans-0.0370.1110.137
genusCitrobacter-0.0360.1170.144
speciesSutterella_parvirubra-0.0360.1180.145
speciesBacteroides_fluxus-0.0360.1230.151
genusDesulfovibrio-0.0350.1270.155
speciesKlebsiella_oxytoca0.0350.1350.165
speciesBacteroides_sp_3_1_19-0.0340.1360.165
speciesHaemophilus_sputorum-0.0330.1510.183
genusMyoviridae_noname-0.0320.1640.198
speciesRuminococcus_champanellensis0.0320.1690.204
speciesCitrobacter_unclassified-0.030.1950.235
speciesOscillibacter_unclassified0.0290.2130.256
speciesClostridium_sp_KLE_17550.0280.2190.262
speciesEubacterium_dolichum-0.0280.2220.265
speciesLactococcus_garvieae0.0270.2420.288
speciesStreptococcus_lutetiensis-0.0270.2440.29
speciesBacteroides_sp_1_1_6-0.0270.2450.291
speciesPrevotella_bivia0.0270.250.296
genusCoprobacillus-0.0270.2520.297
speciesKlebsiella_unclassified-0.0270.2520.297
genusClostridiaceae_noname-0.0260.2620.306
speciesLeuconostoc_lactis0.0260.2620.306
speciesClostridiaceae_bacterium_JC118-0.0260.2620.306
speciesButyrivibrio_crossotus0.0250.2880.336
familyViruses_noname-0.0230.3150.365
genusViruses_noname-0.0230.3150.365
speciesBacteroides_salanitronis0.0230.3230.374
genusSlackia0.0220.3370.389
speciesAlistipes_indistinctus0.0220.3420.394
speciesEubacterium_sp_3_1_310.0220.3470.399
genusAcidaminococcaceae_unclassified0.0220.3520.403
speciesLactobacillus_salivarius-0.0210.360.411
speciesCollinsella_unclassified-0.0210.3630.414
familyOscillospiraceae0.0210.3670.416
genusOscillibacter0.0210.3670.416
familyAcidaminococcaceae0.020.3890.44
genusSutterella-0.0190.4040.456
speciesKlebsiella_sp_MS_92_3-0.0190.410.462
speciesBacteroides_sp_2_1_22-0.0190.4220.473
speciesEubacterium_eligens-0.0190.4220.473
genusRoseburia-0.0190.4240.474
speciesAcidaminococcus_fermentans0.0160.4950.552
speciesLactobacillus_oris0.0150.5110.569
genusCatenibacterium0.0150.5190.575
speciesCatenibacterium_mitsuokai0.0150.5190.575
speciesParabacteroides_sp_D13-0.0150.5240.579
familyOxalobacteraceae0.0140.5380.593
speciesDesulfovibrio_desulfuricans-0.0140.5440.598
speciesStreptococcus_phage_Sfi210.0140.5450.598
genusTunalikevirus-0.0140.5510.603
speciesLactococcus_phage_936_sensu_lato0.0140.5570.609
speciesBacteroides_barnesiae-0.0140.5590.609
speciesKlebsiella_phage_KP36-0.0130.580.631
familyVeillonellaceae0.0120.5930.642
speciesParabacteroides_sp_20_30.0120.5930.642
genusPhascolarctobacterium-0.0120.6030.65
speciesPhascolarctobacterium_succinatutens-0.0120.6030.65
speciesAlistipes_putredinis-0.0120.6050.65
genusProteus-0.0120.6110.655
speciesAcidaminococcus_intestini-0.0110.6260.67
phylumSynergistetes-0.0110.6370.674
classSynergistia-0.0110.6370.674
orderSynergistales-0.0110.6370.674
familySynergistaceae-0.0110.6370.674
genusButyricicoccus-0.0110.6380.674
speciesButyricicoccus_pullicaecorum-0.0110.6380.674
speciesOscillibacter_sp_KLE_1745-0.0110.6490.683
speciesLachnospiraceae_bacterium_2_1_58FAA-0.010.650.683
familyRikenellaceae-0.010.6650.696
genusAlistipes-0.010.6650.696
genusOxalobacter0.010.6710.699
speciesOxalobacter_formigenes0.010.6710.699
speciesSutterella_wadsworthensis-0.0090.6820.709
classNegativicutes-0.0090.70.725
orderSelenomonadales-0.0090.70.725
speciesSlackia_piriformis0.0090.7120.734
speciesMitsuokella_multacida-0.0090.7120.734
speciesProteus_mirabilis-0.0080.7330.754
genusPyramidobacter-0.0070.7730.791
speciesPyramidobacter_piscolens-0.0070.7730.791
speciesAlistipes_finegoldii-0.0060.7860.803
speciesEscherichia_unclassified0.0050.8270.843
familyPodoviridae0.0050.8330.847
speciesBacteroides_sp_4_3_47FAA0.0050.840.852
speciesOdoribacter_unclassified0.0050.8410.852
speciesAlistipes_sp_HGB50.0040.8770.886
familySuccinivibrionaceae0.0030.890.896
speciesLactococcus_phage_bIL670.0030.890.896
genusSuccinatimonas-0.0020.9420.944
speciesSuccinatimonas_hippei-0.0020.9420.944
speciesHoldemania_sp_AP20.0010.9580.958
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Association of query gene abundance with clinical phenotypes:

Boxplots:


Statistics:

pheno country case_n ctrl_n case_mean ctrl_mean pvalue rank percentile
Liver cirrhosisChina1201140.009804009164290.01055585905150.01817736839541204040.4448
Ulcerative colitisSpain78660.03576655770720.03008361423910.0457441744514455315.0195
Colorectal cancerAustria64350.108241415330.1424889947040.0537777413315302710.2416
Type II diabetesSweden53920.05801445556680.06935570316790.0980001639498354512.0047
ObesityDenmark1691230.02116608795620.02405496336460.0988823794345729123.9749
Type II diabetesDenmark752770.02393586784820.02243604567070.1884223196241268341.5741
Crohns diseaseSpain17660.02360101916860.03008361423910.5385772225742400779.8238
Type II diabetesChina1831850.03324934523550.0183729923610.6560174462082419279.9498
Rheumatoid arthritisChina127980.04529172955870.04009465000220.7139001515482266275.5727
Click on arrows to sort table data. Shift+click to sort by multiple columns.

Citation:

Nayfach S, Fischbach MA, Pollard KS. MetaQuery: a web server for rapid annotation and quantitative analysis of specific genes in the human gut microbiome. Bioinformatics 2015;31(14). doi:10.1093/bioinformatics/btv382