MetaQuery: quantitative analysis of the human gut microbiome

Results

Estimated gene abundances and results from statistical analyses

Job details:

Submission date: 2021-02-05 01:18:46 PST
Job id & description: 2411, pduc
Query type: protein
Count queries & homologs: 1, 56
Min % identity & max e-value: 30%, 1e-5
Min % query & target coverage: 70%, 70%

Click here to download results

Table of contents:


Gut microbiome genes homologous to your query gene:

query_id target_id status kegg eggnog phylum genus query_cov target_cov percent_identity
pduc5163284Lack 5'-endK13920COG4910ProteobacteriaEscherichia100.093.4897.09
pduc5527455CompleteK13920COG4910ProteobacteriaCitrobacter100.0100.085.47
pduc5466148CompleteK13920COG4910ProteobacteriaEscherichia100.0100.083.91
pduc5527270CompleteK13920COG4910ProteobacteriaCitrobacter100.0100.088.95
pduc5473351CompleteK13920COG4910ProteobacteriaSalmonella100.0100.083.82
pduc5436659CompleteK13920COG4910ProteobacteriaKlebsiella100.0100.082.18
pduc5460849CompleteK13920COG4910ProteobacteriaKlebsiella100.0100.082.76
pduc5466263CompleteK13920COG4910Proteobacteriaunknown100.0100.073.56
pduc5613535CompleteK13920COG4910FirmicutesStreptococcus98.2698.8252.66
pduc5544031CompleteK13920COG4910unknownunknown97.0997.6655.62
pduc5554497CompleteK13920COG4910FirmicutesStreptococcus98.8499.4252.94
pduc5584416CompleteK13920COG4910unknownunknown97.0997.6553.29
pduc5519623CompleteK13920COG4910unknownunknown100.0100.053.98
pduc5546415CompleteK13920COG4910unknownunknown100.0100.054.02
pduc5728102CompleteK13920COG4910Spirochaetesunknown98.2698.7950.88
pduc5583176CompleteK13920COG4910FusobacteriaFusobacterium99.42100.050.29
pduc5575395CompleteK13920COG4910FusobacteriaFusobacterium99.42100.050.29
pduc5863684CompleteK13920COG4910FusobacteriaFusobacterium94.77100.051.53
pduc5326570CompleteK13920COG4910FirmicutesVeillonella97.0997.7546.29
pduc5337211CompleteK13920COG4910FirmicutesVeillonella97.0997.7545.14
pduc5840787CompleteK13920COG4910unknownunknown94.77100.049.69
pduc5520549CompleteK13920COG4910Fusobacteriaunknown96.5195.3550.6
pduc5399304CompleteK13920COG4910FirmicutesVeillonella97.0997.7343.35
pduc5347483CompleteK13920COG4910FirmicutesVeillonella97.0997.7545.71
pduc5400824CompleteK13920COG4910FirmicutesVeillonella97.0997.7343.35
pduc5384684CompleteK13920COG4910FirmicutesVeillonella97.0997.7343.93
pduc5334998CompleteK13920COG4910FusobacteriaFusobacterium99.4294.9447.95
pduc5539491CompleteK13920COG4910FirmicutesLactobacillus76.7477.1955.3
pduc5760972CompleteK13920COG4910Firmicutesunknown94.7797.5647.56
pduc6335798CompleteK06122COG4910FirmicutesClostridium75.091.4960.47
pduc5762091CompleteK13920COG4910FirmicutesEubacterium94.7797.5647.59
pduc5659036CompleteK13920COG4910FirmicutesEubacterium94.7795.8147.56
pduc5505964CompleteK13920COG4910unknownunknown96.5195.9346.99
pduc6291145Lack 5'-endK13920COG4910FirmicutesLactobacillus76.7492.3153.79
pduc6217545Lack 5'-endK06122COG4910ProteobacteriaKlebsiella79.6593.8454.74
pduc6261010CompleteK06122COG4910ProteobacteriaCitrobacter75.089.5855.81
pduc5533861CompleteK13920COG4910unknownunknown77.9179.5352.21
pduc6561407CompleteK13920COG4910unknownunknown72.0993.2349.19
pduc5675302CompleteK13920COG4910unknownunknown74.4276.6547.66
pduc6646647CompleteK13920COG4910FirmicutesClostridium72.0995.3848.39
pduc6591887CompleteK13920COG4910unknownunknown73.8496.2145.67
pduc5795989CompleteK13920COG4910unknownunknown74.4278.5349.22
pduc6609581CompleteK13920COG4910unknownunknown73.8496.9546.46
pduc6546598Lack 5'-endK13920COG4910FirmicutesBlautia74.4296.2446.88
pduc6597112CompleteK13920COG4910FirmicutesBlautia76.16100.045.8
pduc6637165CompleteK13920COG4910Firmicutesunknown74.4298.4644.53
pduc6606390CompleteK13920COG4910Firmicutesunknown73.8496.9544.09
pduc6598587CompleteK13920COG4910Firmicutesunknown73.8496.9544.09
pduc6620640CompleteK13920COG4910FirmicutesBlautia72.0995.3845.16
pduc6637784CompleteK13920COG4910FirmicutesBlautia72.0995.3845.16
pduc6643120CompleteK13920COG4910FirmicutesClostridium72.0995.3845.97
pduc6269048Lack 5'-endK13920COG4910unknownunknown76.7491.6743.94
pduc6622347CompleteK13920COG4910unknownunknown72.0995.3842.74
pduc6633126CompleteK13920COG4910unknownunknown72.0995.3845.97
pduc6643407CompleteK13920COG4910Firmicutesunknown72.0995.3844.35
pduc6643441CompleteK13920COG4910Firmicutesunknown72.0995.3845.16
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The abundance of your query across gut microbiome samples:




The prevalence of your query across gut microbiome samples:




Taxonomic groups correlated with your query gene:

tax_level tax_name spearman_rho pvalue qvalue
genusBlautia0.5735.38e-1642.54e-161
speciesRuminococcus_gnavus0.5412.37e-1425.59e-140
genusCoprobacillus0.472.01e-1033.16e-101
speciesCoprobacillus_unclassified0.4641.36e-1001.6e-98
orderLactobacillales0.4581.31e-971.24e-95
classBacilli0.4582.15e-971.69e-95
familyStreptococcaceae0.4549.11e-966.14e-94
genusStreptococcus0.4466.02e-923.55e-90
orderEnterobacteriales0.4421.99e-909.39e-89
familyEnterobacteriaceae0.4421.99e-909.39e-89
speciesClostridium_ramosum0.441.6e-896.87e-88
genusEggerthella0.442.56e-891.01e-87
speciesEggerthella_unclassified0.4311.35e-854.9e-84
classGammaproteobacteria0.4237.2e-822.43e-80
genusOdoribacter-0.3891.54e-684.85e-67
speciesOdoribacter_splanchnicus-0.3825.79e-661.71e-64
genusKlebsiella0.383.93e-651.09e-63
familyActinomycetaceae0.3774.48e-641.17e-62
familyRikenellaceae-0.3765.54e-641.31e-62
genusAlistipes-0.3765.54e-641.31e-62
genusActinomyces0.3768.37e-641.88e-62
speciesStreptococcus_salivarius0.3769.42e-642.02e-62
genusEscherichia0.3751.68e-633.45e-62
speciesClostridium_bolteae0.3752.03e-633.99e-62
speciesKlebsiella_pneumoniae0.3655.03e-609.5e-59
phylumFusobacteria0.3656.95e-601.17e-58
classFusobacteriia0.3656.95e-601.17e-58
orderFusobacteriales0.3656.95e-601.17e-58
familyFusobacteriaceae0.3641.05e-591.71e-58
speciesClostridium_nexile0.3625.2e-598.18e-58
speciesEscherichia_coli0.3611.16e-581.77e-57
genusFusobacterium0.3611.32e-581.95e-57
familyClostridiaceae0.3611.38e-581.97e-57
genusClostridium0.3595.04e-587e-57
speciesStreptococcus_anginosus0.3566.71e-579.05e-56
speciesAlistipes_shahii-0.3542.15e-562.82e-55
familyBacillales_noname0.3533.79e-564.71e-55
genusGemella0.3533.79e-564.71e-55
speciesLachnospiraceae_bacterium_1_4_56FAA0.3473.82e-544.62e-53
orderActinomycetales0.3384.2e-514.96e-50
orderBacillales0.3384.41e-515.08e-50
phylumBacteroidetes-0.3345.56e-506.06e-49
classBacteroidia-0.3345.65e-506.06e-49
orderBacteroidales-0.3345.65e-506.06e-49
speciesClostridium_symbiosum0.331.02e-481.07e-47
speciesEggerthella_lenta0.3284.44e-484.56e-47
speciesStreptococcus_sanguinis0.3261.63e-471.64e-46
familyPorphyromonadaceae-0.3261.75e-471.72e-46
genusSolobacterium0.327.34e-466.93e-45
speciesSolobacterium_moorei0.327.34e-466.93e-45
speciesAlistipes_senegalensis-0.3182.61e-452.42e-44
speciesStreptococcus_parasanguinis0.3152.64e-442.4e-43
speciesStreptococcus_mitis_oralis_pneumoniae0.3121.31e-431.15e-42
speciesAlistipes_putredinis-0.3121.32e-431.15e-42
speciesLachnospiraceae_bacterium_9_1_43BFAA0.3122.26e-431.94e-42
speciesBlautia_producta0.3043.4e-412.75e-40
familyBacteroidales_noname-0.3043.44e-412.75e-40
genusBacteroidales_noname-0.3043.44e-412.75e-40
speciesBacteroidales_bacterium_ph8-0.3043.44e-412.75e-40
speciesStreptococcus_vestibularis0.2981.21e-399.52e-39
speciesRuminococcus_torques0.2962.94e-392.27e-38
speciesClostridium_hathewayi0.2957.69e-395.85e-38
speciesLachnospiraceae_bacterium_6_1_63FAA0.2924.1e-383.07e-37
familyPeptostreptococcaceae0.2924.87e-383.59e-37
familyEnterococcaceae0.2911.02e-377.41e-37
genusEnterococcus0.2892.09e-371.49e-36
speciesAnaerotruncus_unclassified-0.2886.07e-374.28e-36
speciesBifidobacterium_dentium0.2861.76e-361.22e-35
phylumProteobacteria0.2844.43e-363.03e-35
speciesStreptococcus_gordonii0.2821.21e-358.16e-35
speciesFusobacterium_nucleatum0.2765.2e-343.46e-33
speciesMegasphaera_micronuciformis0.2765.54e-343.59e-33
speciesEubacterium_siraeum-0.2765.55e-343.59e-33
speciesLachnospiraceae_bacterium_2_1_58FAA0.2757.86e-345.01e-33
phylumActinobacteria0.2732.64e-331.64e-32
classActinobacteria0.2732.64e-331.64e-32
speciesClostridium_clostridioforme0.2733.32e-332.04e-32
familyLactobacillaceae0.2724.25e-332.57e-32
genusPeptostreptococcaceae_noname0.2725.13e-333.04e-32
speciesClostridiales_bacterium_1_7_47FAA0.2725.16e-333.04e-32
speciesStreptococcus_mutans0.2718.53e-334.97e-32
orderBurkholderiales-0.2692.32e-321.34e-31
speciesRoseburia_hominis-0.2692.47e-321.4e-31
speciesSubdoligranulum_unclassified-0.2683.22e-321.81e-31
genusLactobacillus0.2651.72e-319.55e-31
speciesErysipelotrichaceae_bacterium_2_2_44A0.2642.99e-311.64e-30
speciesAlistipes_finegoldii-0.2643.7e-312.01e-30
genusAnaerostipes0.2635.51e-312.96e-30
genusPantoea0.2635.87e-313.08e-30
speciesPantoea_unclassified0.2635.87e-313.08e-30
speciesAnaerostipes_unclassified0.2629e-314.67e-30
familySutterellaceae-0.2621.15e-305.9e-30
classBetaproteobacteria-0.2621.18e-305.99e-30
genusPeptostreptococcus0.262.6e-301.31e-29
genusBarnesiella-0.2594.26e-302.09e-29
speciesBarnesiella_intestinihominis-0.2594.26e-302.09e-29
genusSubdoligranulum-0.2588.18e-303.98e-29
genusRothia0.2531.09e-285.25e-28
familyMicrococcaceae0.2531.13e-285.39e-28
genusButyrivibrio-0.2521.84e-288.68e-28
speciesLachnospiraceae_bacterium_5_1_57FAA0.2513.03e-281.42e-27
genusLachnospiraceae_noname0.254.33e-282e-27
speciesLactobacillus_salivarius0.2481.28e-275.87e-27
speciesFusobacterium_ulcerans0.2472.56e-271.16e-26
speciesRothia_mucilaginosa0.2455.78e-272.6e-26
speciesClostridium_bartlettii0.2456.06e-272.7e-26
genusParabacteroides-0.2431.36e-266e-26
speciesStreptococcus_australis0.2415.15e-262.25e-25
speciesRuminococcus_obeum0.247.33e-263.17e-25
speciesEscherichia_unclassified0.247.53e-263.23e-25
familyLeuconostocaceae0.2355.82e-252.47e-24
speciesParabacteroides_merdae-0.2357.63e-253.22e-24
orderCoriobacteriales0.2341.1e-244.55e-24
familyCoriobacteriaceae0.2341.1e-244.55e-24
speciesRuminococcus_sp_5_1_39BFAA0.2331.54e-246.32e-24
genusCoprobacter-0.237.13e-242.88e-23
speciesCoprobacter_fastidiosus-0.237.13e-242.88e-23
speciesBacteroides_uniformis-0.2281.98e-237.92e-23
speciesAlistipes_indistinctus-0.2272.5e-239.92e-23
classErysipelotrichia0.2249.75e-233.77e-22
orderErysipelotrichales0.2249.75e-233.77e-22
familyErysipelotrichaceae0.2249.75e-233.77e-22
genusCitrobacter0.2241.17e-224.49e-22
familyLachnospiraceae0.2214.71e-221.79e-21
speciesKlebsiella_oxytoca0.2198.93e-223.33e-21
orderBifidobacteriales0.2198.96e-223.33e-21
familyBifidobacteriaceae0.2198.96e-223.33e-21
speciesLachnospiraceae_bacterium_5_1_63FAA0.2199.71e-223.58e-21
speciesCitrobacter_unclassified0.2172.69e-219.84e-21
speciesCitrobacter_freundii0.2162.94e-211.07e-20
genusBifidobacterium0.2147.01e-212.53e-20
speciesEnterobacter_cloacae0.2121.95e-206.97e-20
speciesAlistipes_onderdonkii-0.2113.53e-201.25e-19
genusEnterobacter0.213.9e-201.37e-19
speciesFusobacterium_varium0.214.7e-201.64e-19
speciesPeptostreptococcus_stomatis0.215.07e-201.76e-19
genusFlavonifractor0.2095.74e-201.96e-19
speciesFlavonifractor_plautii0.2095.74e-201.96e-19
genusOxalobacter-0.2097.03e-202.37e-19
speciesOxalobacter_formigenes-0.2097.03e-202.37e-19
speciesLactobacillus_fermentum0.2071.45e-194.85e-19
speciesClostridium_perfringens0.2071.62e-195.38e-19
familyOxalobacteraceae-0.2044.4e-191.44e-18
familyOscillospiraceae-0.2044.42e-191.44e-18
genusOscillibacter-0.2044.42e-191.44e-18
speciesFusobacterium_mortiferum0.2037.54e-192.44e-18
speciesEubacterium_hallii0.1993.81e-181.22e-17
speciesEubacterium_eligens-0.1993.86e-181.23e-17
speciesVeillonella_parvula0.1986.05e-181.92e-17
speciesOscillibacter_unclassified-0.1977.55e-182.38e-17
speciesLactobacillus_gasseri0.1979.44e-182.95e-17
speciesPrevotella_buccae0.1961.08e-173.35e-17
speciesCampylobacter_concisus0.1961.28e-173.95e-17
speciesParaprevotella_xylaniphila-0.1943.08e-179.44e-17
speciesStreptococcus_thermophilus0.1934.06e-171.24e-16
speciesEnterococcus_faecalis0.1924.58e-171.39e-16
speciesEnterococcus_faecium0.1925.77e-171.73e-16
speciesLachnospiraceae_bacterium_7_1_58FAA-0.1926.31e-171.89e-16
genusAnaerotruncus-0.1916.97e-172.07e-16
genusLeuconostoc0.191.04e-163.07e-16
speciesErysipelotrichaceae_bacterium_6_1_450.1882.06e-166.04e-16
genusClostridiales_noname0.1873.31e-169.64e-16
genusVeillonella0.1873.54e-161.03e-15
speciesClostridium_citroniae0.1873.62e-161.04e-15
genusErysipelotrichaceae_noname0.1857.2e-162.06e-15
speciesVeillonella_dispar0.1822.06e-155.86e-15
speciesBifidobacterium_longum0.1822.3e-156.5e-15
genusParasutterella-0.1822.46e-156.83e-15
speciesEubacterium_dolichum0.1822.46e-156.83e-15
speciesParasutterella_excrementihominis-0.1822.46e-156.83e-15
familyClostridiales_Family_XI_Incertae_Sedis0.1795.4e-151.49e-14
genusPseudoflavonifractor-0.1761.62e-144.42e-14
speciesPseudoflavonifractor_capillosus-0.1761.62e-144.42e-14
speciesLactobacillus_delbrueckii0.1761.9e-145.15e-14
genusDesulfovibrio-0.1752.85e-147.69e-14
speciesLactobacillus_casei_paracasei0.1743.45e-149.25e-14
speciesBlautia_hydrogenotrophica0.1735.12e-141.37e-13
speciesLactobacillus_rhamnosus0.1726.79e-141.8e-13
speciesWeissella_cibaria0.171.25e-133.3e-13
speciesCoprococcus_sp_ART55_1-0.1683.07e-138.05e-13
speciesSutterella_wadsworthensis-0.1673.65e-139.52e-13
genusGordonibacter0.1665.13e-131.32e-12
speciesGordonibacter_pamelaeae0.1665.13e-131.32e-12
speciesBacteroides_cellulosilyticus-0.1656.41e-131.64e-12
genusWeissella0.1657.1e-131.81e-12
genusMorganella0.1657.96e-132.01e-12
speciesMorganella_morganii0.1657.96e-132.01e-12
genusMitsuokella-0.1649.68e-132.43e-12
speciesMitsuokella_unclassified-0.1641.03e-122.57e-12
familyPrevotellaceae-0.1631.29e-123.2e-12
genusLactococcus0.1631.42e-123.51e-12
speciesGemella_morbillorum0.1631.47e-123.61e-12
speciesLactobacillus_mucosae0.1622.09e-125.11e-12
genusAggregatibacter0.1612.15e-125.23e-12
speciesButyrivibrio_unclassified-0.162.99e-127.24e-12
genusFaecalibacterium-0.163.13e-127.5e-12
speciesFaecalibacterium_prausnitzii-0.163.13e-127.5e-12
genusCampylobacter0.163.3e-127.87e-12
familyCampylobacteraceae0.1594.3e-121.02e-11
speciesButyrivibrio_crossotus-0.1587.27e-121.72e-11
genusSutterella-0.1561.08e-112.54e-11
speciesLachnospiraceae_bacterium_3_1_46FAA-0.1561.29e-113.01e-11
genusParaprevotella-0.1542.18e-115.07e-11
speciesAggregatibacter_segnis0.1542.21e-115.11e-11
speciesParaprevotella_clara-0.1542.32e-115.34e-11
speciesClostridium_asparagiforme0.1533.06e-117.01e-11
speciesParaprevotella_unclassified-0.1533.25e-117.41e-11
speciesLactobacillus_oris0.1515.16e-111.17e-10
speciesLactobacillus_vaginalis0.1515.16e-111.17e-10
phylumFirmicutes0.156.96e-111.56e-10
genusButyricimonas-0.157.57e-111.69e-10
speciesButyricimonas_synergistica-0.157.57e-111.69e-10
speciesMethanobrevibacter_smithii-0.1491.03e-102.28e-10
classEpsilonproteobacteria0.1481.28e-102.81e-10
orderCampylobacterales0.1481.28e-102.81e-10
speciesLactobacillus_plantarum0.1471.52e-103.32e-10
speciesDorea_formicigenerans0.1471.92e-104.18e-10
familyClostridiales_noname0.1471.94e-104.19e-10
classMethanobacteria-0.1461.96e-104.19e-10
orderMethanobacteriales-0.1461.96e-104.19e-10
familyMethanobacteriaceae-0.1461.96e-104.19e-10
genusDorea0.1462.15e-104.57e-10
phylumEuryarchaeota-0.1462.22e-104.7e-10
speciesCoprococcus_eutactus-0.1462.34e-104.93e-10
speciesEubacterium_rectale-0.1452.92e-106.13e-10
speciesVeillonella_atypica0.1453.15e-106.58e-10
genusMethanobrevibacter-0.1434.88e-101.01e-09
familyBurkholderiales_noname-0.1427.07e-101.46e-09
speciesKlebsiella_sp_MS_92_30.1427.77e-101.6e-09
speciesErysipelotrichaceae_bacterium_21_30.1419.1e-101.87e-09
speciesLactococcus_lactis0.1419.7e-101.98e-09
speciesBacteroides_dorei-0.1419.88e-102.01e-09
genusBurkholderiales_noname-0.1411.02e-092.06e-09
speciesBurkholderiales_bacterium_1_1_47-0.1411.02e-092.06e-09
speciesRoseburia_inulinivorans-0.141.21e-092.43e-09
speciesDesulfovibrio_desulfuricans-0.141.27e-092.54e-09
speciesVeillonella_unclassified0.141.3e-092.59e-09
speciesLactococcus_garvieae0.141.33e-092.64e-09
speciesAnaerostipes_hadrus0.141.36e-092.69e-09
speciesBacteroides_fragilis0.1382.15e-094.23e-09
speciesWeissella_confusa0.1363.16e-096.19e-09
genusParvimonas0.1363.29e-096.42e-09
speciesParvimonas_unclassified0.1363.31e-096.43e-09
speciesBacteroides_vulgatus-0.1363.36e-096.5e-09
speciesKlebsiella_unclassified0.1354.06e-097.82e-09
familyMyoviridae0.1354.18e-098.02e-09
speciesDesulfovibrio_piger-0.1354.9e-099.36e-09
genusRoseburia-0.1345.6e-091.07e-08
phylumVerrucomicrobia-0.1338.72e-091.62e-08
classVerrucomicrobiae-0.1338.72e-091.62e-08
orderVerrucomicrobiales-0.1338.72e-091.62e-08
familyVerrucomicrobiaceae-0.1338.72e-091.62e-08
genusAkkermansia-0.1338.72e-091.62e-08
speciesAkkermansia_muciniphila-0.1338.72e-091.62e-08
genusRuminococcus0.1329.2e-091.7e-08
speciesLactobacillus_ruminis-0.1311.34e-082.47e-08
speciesEggerthella_sp_1_3_56FAA0.1311.44e-082.64e-08
speciesStreptococcus_infantarius0.131.52e-082.78e-08
speciesPropionibacterium_freudenreichii0.1291.97e-083.59e-08
speciesClostridium_sp_L2_50-0.1292.01e-083.65e-08
speciesRuminococcus_lactaris-0.1292.12e-083.83e-08
speciesHaemophilus_paraphrohaemolyticus0.1273.2e-085.76e-08
speciesEubacterium_limosum0.1273.27e-085.87e-08
genusMegasphaera0.1264.24e-087.58e-08
speciesEnterobacter_aerogenes0.1264.8e-088.55e-08
speciesLactobacillus_crispatus0.1247.75e-081.38e-07
speciesBacteroides_pectinophilus-0.1247.92e-081.4e-07
speciesErysipelotrichaceae_bacterium_3_1_530.1247.93e-081.4e-07
speciesRuminococcus_callidus-0.1238.91e-081.56e-07
speciesErysipelotrichaceae_bacterium_5_2_54FAA0.1231.03e-071.8e-07
genusPropionibacterium0.1231.06e-071.85e-07
genusProteus0.1221.36e-072.36e-07
speciesLachnospiraceae_bacterium_2_1_46FAA0.121.91e-073.3e-07
speciesRuminococcus_champanellensis-0.1192.66e-074.58e-07
speciesStreptococcus_lutetiensis0.1173.98e-076.83e-07
speciesLachnospiraceae_bacterium_8_1_57FAA-0.1155.54e-079.47e-07
speciesMethanobrevibacter_unclassified-0.1155.58e-079.51e-07
speciesRuminococcus_sp_JC3040.1155.87e-079.97e-07
familyBacteroidaceae-0.1155.97e-071.01e-06
genusBacteroides-0.1155.97e-071.01e-06
speciesAlistipes_sp_HGB5-0.1111.36e-062.28e-06
speciesBifidobacterium_animalis0.1111.48e-062.48e-06
speciesEubacterium_sp_3_1_310.1092.5e-064.17e-06
speciesEubacterium_biforme-0.1083.02e-065.02e-06
genusActinobacillus0.1083.14e-065.18e-06
speciesActinobacillus_unclassified0.1083.14e-065.18e-06
speciesProteus_mirabilis0.1073.47e-065.71e-06
genusCatenibacterium-0.1073.53e-065.77e-06
speciesCatenibacterium_mitsuokai-0.1073.53e-065.77e-06
speciesBifidobacterium_pseudocatenulatum0.1073.75e-066.1e-06
speciesAnaerotruncus_colihominis0.1064.05e-066.57e-06
familyAcidaminococcaceae-0.1064.52e-067.31e-06
genusRuminococcaceae_noname-0.1054.85e-067.79e-06
speciesRuminococcaceae_bacterium_D16-0.1054.85e-067.79e-06
speciesEubacterium_ventriosum-0.1055e-068e-06
speciesHaemophilus_sputorum0.1055.28e-068.42e-06
genusPhascolarctobacterium-0.1046.18e-069.79e-06
speciesPhascolarctobacterium_succinatutens-0.1046.18e-069.79e-06
speciesParabacteroides_sp_D13-0.1046.82e-061.08e-05
speciesMegamonas_unclassified0.1029.85e-061.55e-05
genusMegamonas0.1021.07e-051.68e-05
speciesMitsuokella_multacida-0.1011.17e-051.83e-05
familyVeillonellaceae0.0991.78e-052.77e-05
speciesBifidobacterium_breve0.0972.62e-054.07e-05
classDeltaproteobacteria-0.0972.89e-054.44e-05
orderDesulfovibrionales-0.0972.89e-054.44e-05
familyDesulfovibrionaceae-0.0972.89e-054.44e-05
genusCoprococcus-0.0962.96e-054.54e-05
speciesBacteroides_caccae-0.0944.75e-057.26e-05
speciesBacteroides_ovatus-0.0944.87e-057.41e-05
speciesLachnospiraceae_bacterium_3_1_57FAA_CT10.0926.53e-059.91e-05
speciesSubdoligranulum_sp_4_3_54A2FAA0.0926.64e-050.0001
speciesLeuconostoc_lactis0.099.22e-050.000139
speciesCollinsella_intestinalis0.099.37e-050.000141
speciesRoseburia_intestinalis-0.0890.0001190.000178
genusPeptoniphilus0.0880.0001310.000196
speciesBifidobacterium_bifidum0.0860.0001940.000289
speciesPrevotella_copri-0.0850.0002470.000367
genusMyoviridae_noname0.0850.0002490.000368
genusLambdalikevirus0.0840.0002550.000376
speciesPeptostreptococcus_anaerobius0.0830.0003450.000507
genusSutterellaceae_unclassified-0.0820.0003680.000539
genusSuccinatimonas-0.0810.0004420.000644
speciesSuccinatimonas_hippei-0.0810.0004420.000644
speciesBacteroides_xylanisolvens-0.080.0005360.000778
speciesEnterobacteria_phage_HK5440.080.0005760.000834
speciesBacteroides_faecis-0.0790.0005940.000857
familySuccinivibrionaceae-0.0790.0006110.000879
genusCoriobacteriaceae_noname0.0790.000640.000918
speciesCoprobacillus_sp_D60.0790.0006750.000961
speciesCoriobacteriaceae_bacterium_phI0.0790.0006760.000961
genusClostridiaceae_noname0.0790.0006780.000961
speciesClostridiaceae_bacterium_JC1180.0790.0006780.000961
speciesOscillibacter_sp_KLE_1728-0.0780.0007530.00106
genusAcidaminococcaceae_unclassified-0.0780.0007590.00107
speciesDialister_invisus0.0770.000820.00115
speciesStreptococcus_pasteurianus0.0760.0009660.00135
speciesBacteroides_intestinalis-0.0750.001090.00152
familyPropionibacteriaceae0.0740.001360.00189
genusPrevotella-0.0740.001450.00201
phylumViruses_noname0.0730.001570.00217
classViruses_noname0.0730.001570.00217
speciesClostridium_sp_KLE_17550.0730.001660.00228
speciesLactobacillus_amylovorus0.0720.001950.00268
speciesBifidobacterium_angulatum-0.0710.001980.00271
speciesClostridium_spiroforme0.0710.002060.00281
classClostridia0.0710.002210.00299
orderClostridiales0.0710.002210.00299
speciesLactobacillus_reuteri0.0710.002210.00299
genusButyricicoccus0.070.002420.00325
speciesButyricicoccus_pullicaecorum0.070.002420.00325
speciesPrevotella_bivia0.070.00250.00335
speciesAlistipes_sp_AP11-0.070.002590.00346
familyStaphylococcaceae0.0690.002640.00352
genusAdlercreutzia0.0680.003240.0043
speciesAdlercreutzia_equolifaciens0.0680.003240.0043
orderPseudomonadales0.0670.003580.00473
speciesC2likevirus_unclassified-0.0670.003830.00505
speciesCoprococcus_catus-0.0660.004370.00575
genusC2likevirus-0.0660.004410.00578
speciesLactococcus_phage_936_sensu_lato-0.0660.004480.00586
speciesBacteroides_nordii-0.0640.00530.00691
speciesTuricibacter_sanguinis0.0630.006250.00813
speciesParabacteroides_distasonis-0.0620.006990.00906
genusStaphylococcus0.0620.007360.00952
speciesClostridium_sp_ATCC_BAA_4420.0620.007430.00958
speciesBacteroides_salanitronis-0.0610.008020.0103
speciesBifidobacterium_adolescentis-0.0590.01070.0137
genusEubacterium-0.0590.01080.0138
orderCaudovirales0.0590.01090.0139
familyEubacteriaceae-0.0590.01110.0141
speciesLachnospiraceae_bacterium_1_1_57FAA0.0580.01150.0146
speciesOscillibacter_sp_KLE_1745-0.0580.01160.0147
speciesParabacteroides_goldsteinii-0.0580.0120.0151
speciesHoldemania_sp_AP20.0580.01250.0157
speciesBacteroides_sp_2_1_22-0.0580.01260.0158
genusSiphoviridae_noname0.0570.01330.0167
familyRuminococcaceae-0.0570.01410.0176
speciesPeptostreptococcaceae_noname_unclassified0.0550.0180.0224
speciesPorphyromonas_uenonis0.0540.01910.0237
speciesCoprobacillus_sp_29_10.0530.02150.0266
speciesBacteroides_barnesiae-0.0520.02450.0303
genusMethanosphaera-0.0520.02550.0313
speciesMethanosphaera_stadtmanae-0.0520.02550.0313
speciesStreptococcus_phage_Sfi210.0510.02780.0341
speciesSutterella_parvirubra0.0510.02850.0348
speciesBacteroides_coprophilus-0.050.02940.0359
speciesClostridium_leptum-0.0490.03420.0416
speciesBacteroides_clarus-0.0480.03770.0457
speciesBacteroides_thetaiotaomicron-0.0470.04090.0495
genusDialister0.0470.04110.0496
speciesBilophila_unclassified-0.0460.04460.0537
genusTuricibacter0.0460.04790.0575
genusBilophila-0.0460.04840.058
speciesTuricibacter_unclassified0.0440.05910.0706
speciesLactobacillus_acidophilus0.0440.05950.0709
speciesParabacteroides_johnsonii-0.0430.06220.074
speciesDialister_succinatiphilus-0.0420.06870.0815
speciesBacteroides_sp_1_1_6-0.0420.06910.0817
genusTunalikevirus0.040.08020.0946
genusCollinsella0.040.08040.0946
speciesMegamonas_rupellensis0.040.08350.098
familyViruses_noname0.040.08460.0988
genusViruses_noname0.040.08460.0988
genusSlackia0.0380.09940.116
speciesEubacterium_ramulus-0.0370.1130.131
speciesDorea_longicatena0.0340.140.162
speciesBilophila_wadsworthia-0.0340.1450.168
speciesBacteroides_salyersiae-0.0330.1530.177
speciesOdoribacter_unclassified-0.0330.1560.18
speciesKlebsiella_phage_KP360.0320.1680.192
speciesLactobacillus_sanfranciscensis0.0320.1680.192
classNegativicutes0.0310.1740.198
orderSelenomonadales0.0310.1740.198
genusHoldemania0.0310.1830.208
orderViruses_noname0.030.1960.222
familyPodoviridae0.0280.2210.25
speciesHoldemania_filiformis-0.0250.2780.314
speciesBacteroides_massiliensis-0.0250.2850.321
speciesBacteroides_coprocola0.0220.3330.374
speciesMegamonas_hypermegale0.0220.3380.379
speciesBacteroides_finegoldii-0.0220.3470.388
speciesBacteroides_eggerthii-0.020.3820.426
speciesLactococcus_phage_P6800.020.3910.435
speciesOlsenella_unclassified-0.020.3940.438
speciesPrevotella_stercorea0.020.3960.439
speciesBifidobacterium_catenulatum0.0190.4080.451
genusPyramidobacter0.0190.4110.452
speciesPyramidobacter_piscolens0.0190.4110.452
speciesBacteroides_sp_3_1_19-0.0190.4210.462
speciesDorea_unclassified-0.0180.4270.465
phylumSynergistetes0.0180.4290.465
classSynergistia0.0180.4290.465
orderSynergistales0.0180.4290.465
familySynergistaceae0.0180.4290.465
speciesMegasphaera_elsdenii-0.0180.430.466
genusOlsenella0.0180.4340.469
speciesLactococcus_phage_jm20.0170.4660.502
genusPorphyromonas0.0160.5030.541
speciesBacteroides_oleiciplenus0.0150.510.547
speciesHoldemania_unclassified-0.0150.530.567
speciesEubacterium_cylindroides0.0140.5360.572
speciesLactococcus_phage_bIL670.0140.5370.572
familySiphoviridae0.0140.5580.592
speciesPorphyromonas_asaccharolytica0.0140.5580.592
speciesMegamonas_funiformis-0.0130.5620.595
speciesSlackia_piriformis-0.0130.5650.597
speciesRuminococcus_bromii0.0130.5850.616
speciesCoprococcus_comes-0.0120.5960.627
orderAeromonadales-0.0120.60.629
speciesHaemophilus_parainfluenzae0.0120.6040.632
genusHaemophilus0.0110.6290.657
speciesAlistipes_unclassified0.0110.6370.664
speciesAcidaminococcus_unclassified-0.010.6580.684
orderPasteurellales0.010.6690.692
familyPasteurellaceae0.010.6690.692
speciesRoseburia_unclassified-0.0090.6880.711
speciesCollinsella_aerofaciens0.0090.6940.715
speciesParabacteroides_sp_20_3-0.0080.7360.757
speciesCollinsella_unclassified0.0070.7530.773
speciesBacteroides_sp_4_3_47FAA-0.0070.7690.787
speciesLactococcus_phage_phi7-0.0060.7910.808
speciesBacteroides_stercoris-0.0030.8830.9
speciesAcidaminococcus_intestini0.0030.8940.909
speciesOdoribacter_laneus-0.0020.9340.948
speciesCollinsella_tanakaei0.0020.9430.955
speciesBacteroides_fluxus0.0010.9610.971
genusAcidaminococcus0.0010.9660.974
speciesBacteroides_plebeius-0.0010.970.976
speciesParabacteroides_unclassified-0.0010.9730.977
speciesMegasphaera_unclassified0.00.9910.993
speciesAcidaminococcus_fermentans0.00.9980.998
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Association of query gene abundance with clinical phenotypes:

Boxplots:


Statistics:

pheno country case_n ctrl_n case_mean ctrl_mean pvalue rank percentile
Liver cirrhosisChina1201140.06739212558770.01290901209947.23819637869e-182520.846518
Crohns diseaseSpain17660.06120658463040.01393135831325.75428195152e-0515655.20366
Type II diabetesDenmark752770.007155995969160.006200769608180.0014747290896227268.93565
Type II diabetesSweden53920.03024284965180.02234149837290.0791705752313301910.2235
Type II diabetesChina1831850.02807448350520.02601934486550.3469905472171758558.1149
ObesityDenmark1691230.007263483120320.00774048927640.3656477894561592352.3593
Rheumatoid arthritisChina127980.0319834827660.02473314964640.6517676439022121070.7307
Ulcerative colitisSpain78660.01448693623570.01393135831320.7084550373442389978.8382
Colorectal cancerAustria64350.0419025215680.04983094240390.8634356517392633889.1122
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Citation:

Nayfach S, Fischbach MA, Pollard KS. MetaQuery: a web server for rapid annotation and quantitative analysis of specific genes in the human gut microbiome. Bioinformatics 2015;31(14). doi:10.1093/bioinformatics/btv382