MetaQuery: quantitative analysis of the human gut microbiome

Results

Estimated gene abundances and results from statistical analyses

Job details:

Submission date: 2021-02-17 18:14:58 PST
Job id & description: 2424, PRODH
Query type: protein
Count queries & homologs: 1, 17
Min % identity & max e-value: 30%, 1e-5
Min % query & target coverage: 70%, 70%

Click here to download results

Table of contents:


Gut microbiome genes homologous to your query gene:

query_id target_id status kegg eggnog phylum genus query_cov target_cov percent_identity
sp|P10503|PUTA_SALTY46925CompleteK13821COG4230;COG0506ProteobacteriaCitrobacter100.0100.091.52
sp|P10503|PUTA_SALTY46921CompleteK13821COG4230;COG0506ProteobacteriaCitrobacter100.0100.091.67
sp|P10503|PUTA_SALTY43947CompleteK13821COG4230;COG0506ProteobacteriaEscherichia100.098.3691.29
sp|P10503|PUTA_SALTY46922CompleteK13821COG4230;COG0506ProteobacteriaEscherichia100.0100.091.14
sp|P10503|PUTA_SALTY46898CompleteK13821COG4230;COG0506ProteobacteriaEscherichia100.0100.090.98
sp|P10503|PUTA_SALTY46923CompleteK13821COG4230;COG0506ProteobacteriaEnterobacter100.0100.088.71
sp|P10503|PUTA_SALTY46906CompleteK13821COG4230;COG0506ProteobacteriaEnterobacter100.0100.088.79
sp|P10503|PUTA_SALTY38020CompleteK13821COG4230;COG0506ProteobacteriaEnterobacter100.094.4288.94
sp|P10503|PUTA_SALTY46919CompleteK13821COG4230;COG0506ProteobacteriaKlebsiella100.0100.087.65
sp|P10503|PUTA_SALTY46920CompleteK13821COG4230;COG0506ProteobacteriaEnterobacter100.0100.088.11
sp|P10503|PUTA_SALTY46907CompleteK13821COG4230;COG0506ProteobacteriaKlebsiella100.0100.088.03
sp|P10503|PUTA_SALTY46176CompleteK13821COG4230;COG0506ProteobacteriaKlebsiella100.099.5587.95
sp|P10503|PUTA_SALTY46430CompleteK13821COG4230;COG0506Proteobacteriaunknown100.0100.077.72
sp|P10503|PUTA_SALTY46763CompleteK13821COG4230;COG0506ProteobacteriaProvidencia99.62100.075.08
sp|P10503|PUTA_SALTY46667CompleteK13821COG4230;COG0506ProteobacteriaProteus99.9299.9270.94
sp|P10503|PUTA_SALTY72950CompleteK13821COG4230;COG0506ProteobacteriaHaemophilus92.9597.3447.17
sp|P10503|PUTA_SALTY75806CompleteK13821COG4230;COG0506ProteobacteriaAggregatibacter77.1285.6952.49
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The abundance of your query across gut microbiome samples:




The prevalence of your query across gut microbiome samples:




Taxonomic groups correlated with your query gene:

tax_level tax_name spearman_rho pvalue qvalue
phylumProteobacteria0.7460.00.0
classGammaproteobacteria0.9520.00.0
orderEnterobacteriales0.9490.00.0
familyEnterobacteriaceae0.9490.00.0
genusEscherichia0.8870.00.0
speciesEscherichia_coli0.8640.00.0
genusKlebsiella0.6155.17e-1953.49e-193
speciesKlebsiella_pneumoniae0.5864.52e-1732.67e-171
speciesEscherichia_unclassified0.5552.94e-1511.54e-149
genusPantoea0.4532.61e-951.12e-93
speciesPantoea_unclassified0.4532.61e-951.12e-93
genusEnterobacter0.4221.52e-815.98e-80
speciesEnterobacter_cloacae0.4138.88e-783.22e-76
familyFusobacteriaceae0.3715.84e-621.97e-60
phylumFusobacteria0.3662.14e-605.94e-59
classFusobacteriia0.3662.14e-605.94e-59
orderFusobacteriales0.3662.14e-605.94e-59
genusFusobacterium0.3663.08e-608.08e-59
speciesRuminococcus_gnavus0.3619.08e-592.26e-57
speciesSubdoligranulum_unclassified-0.3595.47e-581.29e-56
genusSubdoligranulum-0.3535.83e-561.31e-54
genusCitrobacter0.3482.48e-545.32e-53
speciesLachnospiraceae_bacterium_7_1_58FAA-0.3475.63e-541.16e-52
speciesCitrobacter_unclassified0.3361.13e-502.22e-49
speciesCitrobacter_freundii0.3321.68e-493.17e-48
speciesClostridium_nexile0.3322.47e-494.48e-48
speciesEubacterium_siraeum-0.3254e-476.99e-46
speciesAnaerotruncus_unclassified-0.3042.47e-414.16e-40
genusButyrivibrio-0.2931.87e-383.04e-37
speciesKlebsiella_oxytoca0.2838.75e-361.38e-34
genusCoprobacillus0.2831.04e-351.58e-34
genusPseudoflavonifractor-0.2821.43e-352.05e-34
speciesPseudoflavonifractor_capillosus-0.2821.43e-352.05e-34
speciesVeillonella_parvula0.2764.08e-345.66e-33
genusVeillonella0.2692e-322.7e-31
speciesCoprobacillus_unclassified0.2684.39e-325.76e-31
speciesClostridium_bolteae0.2661.31e-311.67e-30
genusCoprococcus-0.2661.42e-311.76e-30
speciesClostridium_leptum-0.2644.25e-315.14e-30
speciesClostridium_perfringens0.2611.55e-301.8e-29
speciesEubacterium_ramulus-0.2611.56e-301.8e-29
genusBarnesiella-0.2612.05e-302.25e-29
speciesBarnesiella_intestinihominis-0.2612.05e-302.25e-29
genusWeissella0.2594.89e-305.25e-29
speciesKlebsiella_unclassified0.2571.43e-291.5e-28
speciesClostridium_ramosum0.2561.86e-291.91e-28
speciesMegasphaera_micronuciformis0.2553.21e-293.22e-28
familyRuminococcaceae-0.2553.61e-293.55e-28
speciesClostridium_hathewayi0.2531.28e-281.23e-27
speciesBifidobacterium_adolescentis-0.2521.52e-281.43e-27
speciesLactobacillus_salivarius0.2462.87e-272.66e-26
speciesFusobacterium_nucleatum0.2422.01e-261.82e-25
speciesWeissella_confusa0.2422.27e-262.02e-25
speciesLachnospiraceae_bacterium_3_1_46FAA-0.2422.76e-262.41e-25
classClostridia-0.2423.11e-262.62e-25
orderClostridiales-0.2423.11e-262.62e-25
genusMegasphaera0.245.91e-264.89e-25
speciesStreptococcus_anginosus0.2381.52e-251.24e-24
speciesCoprococcus_comes-0.2381.56e-251.25e-24
speciesVeillonella_unclassified0.2372.5e-251.97e-24
speciesFusobacterium_ulcerans0.2357.2e-255.57e-24
genusEnterococcus0.2357.41e-255.64e-24
speciesHaemophilus_parainfluenzae0.2357.91e-255.93e-24
genusHaemophilus0.2341.24e-249.14e-24
familyEnterococcaceae0.2331.56e-241.13e-23
orderPasteurellales0.2332.04e-241.44e-23
familyPasteurellaceae0.2332.04e-241.44e-23
speciesEubacterium_rectale-0.2315.47e-243.8e-23
speciesButyrivibrio_unclassified-0.2299.99e-246.83e-23
speciesClostridium_symbiosum0.2281.74e-231.17e-22
speciesDorea_longicatena-0.2282.09e-231.39e-22
genusEubacterium-0.2272.75e-231.8e-22
familyEubacteriaceae-0.2272.8e-231.81e-22
speciesSutterella_wadsworthensis-0.2255.68e-233.62e-22
familyBacteroidales_noname-0.2248.73e-235.35e-22
genusBacteroidales_noname-0.2248.73e-235.35e-22
speciesBacteroidales_bacterium_ph8-0.2248.73e-235.35e-22
classBacilli0.2231.85e-221.12e-21
orderLactobacillales0.2232.07e-221.24e-21
speciesBacteroides_fragilis0.2222.47e-221.46e-21
speciesFusobacterium_mortiferum0.2191.02e-215.94e-21
speciesMitsuokella_unclassified-0.2181.23e-217.08e-21
speciesBacteroides_uniformis-0.2172.29e-211.3e-20
speciesOscillibacter_unclassified-0.2162.88e-211.62e-20
genusAnaerotruncus-0.2155.39e-212.99e-20
familyOscillospiraceae-0.2155.64e-213.06e-20
genusOscillibacter-0.2155.64e-213.06e-20
genusDorea-0.2148.36e-214.48e-20
speciesEubacterium_hallii-0.2149.66e-215.12e-20
genusSutterella-0.2131.33e-206.98e-20
genusCoprobacter-0.2113.4e-201.74e-19
speciesCoprobacter_fastidiosus-0.2113.4e-201.74e-19
genusRuminococcaceae_noname-0.214.99e-202.51e-19
speciesRuminococcaceae_bacterium_D16-0.214.99e-202.51e-19
genusMitsuokella-0.2096.63e-203.29e-19
speciesMegamonas_unclassified0.2081.07e-195.26e-19
genusMegamonas0.2071.41e-196.86e-19
familyRikenellaceae-0.2062.07e-199.87e-19
genusAlistipes-0.2062.07e-199.87e-19
familyLeuconostocaceae0.2053.61e-191.7e-18
phylumVerrucomicrobia-0.2044.31e-191.92e-18
classVerrucomicrobiae-0.2044.31e-191.92e-18
orderVerrucomicrobiales-0.2044.31e-191.92e-18
familyVerrucomicrobiaceae-0.2044.31e-191.92e-18
genusAkkermansia-0.2044.31e-191.92e-18
speciesAkkermansia_muciniphila-0.2044.31e-191.92e-18
speciesRoseburia_hominis-0.2044.46e-191.97e-18
speciesVeillonella_dispar0.2044.58e-192e-18
speciesLactobacillus_mucosae0.2046.08e-192.63e-18
speciesFusobacterium_varium0.2038.05e-193.45e-18
speciesStreptococcus_infantarius0.2021.05e-184.46e-18
speciesWeissella_cibaria0.22.77e-181.17e-17
genusAggregatibacter0.23.02e-181.26e-17
speciesLactococcus_garvieae0.1993.58e-181.48e-17
speciesEggerthella_unclassified0.1985.32e-182.18e-17
familyBacillales_noname0.1986.12e-182.47e-17
genusGemella0.1986.12e-182.47e-17
speciesC2likevirus_unclassified-0.1977.14e-182.86e-17
speciesCoprococcus_catus-0.1978.09e-183.21e-17
familyClostridiaceae0.1978.36e-183.29e-17
speciesAlistipes_senegalensis-0.1979.17e-183.58e-17
speciesEnterobacter_aerogenes0.1951.9e-177.35e-17
genusClostridium0.1951.94e-177.44e-17
genusOdoribacter-0.1942.6e-179.9e-17
genusC2likevirus-0.1942.66e-171e-16
speciesEnterococcus_faecalis0.1933.29e-171.23e-16
speciesAnaerostipes_hadrus-0.1924.99e-171.85e-16
speciesAlistipes_shahii-0.1891.55e-165.72e-16
speciesStreptococcus_mitis_oralis_pneumoniae0.1882.66e-169.73e-16
speciesCollinsella_aerofaciens-0.1873.1e-161.13e-15
genusEggerthella0.1864.59e-161.65e-15
speciesStreptococcus_salivarius0.1856.59e-162.36e-15
phylumFirmicutes-0.1856.82e-162.42e-15
speciesClostridiales_bacterium_1_7_47FAA0.1849.93e-163.5e-15
speciesPrevotella_buccae0.1841.11e-153.88e-15
speciesOdoribacter_splanchnicus-0.1831.42e-154.93e-15
speciesAlistipes_putredinis-0.1812.93e-151.01e-14
genusCollinsella-0.1813.34e-151.14e-14
speciesVeillonella_atypica0.1796.19e-152.1e-14
speciesBifidobacterium_dentium0.1796.66e-152.25e-14
speciesAggregatibacter_segnis0.1788.96e-153e-14
genusActinobacillus0.1771.2e-143.96e-14
speciesActinobacillus_unclassified0.1771.2e-143.96e-14
speciesLachnospiraceae_bacterium_9_1_43BFAA0.1744.04e-141.32e-13
speciesStreptococcus_thermophilus-0.1726e-141.95e-13
familyStreptococcaceae0.1728.03e-142.6e-13
speciesStreptococcus_australis0.1711.12e-133.6e-13
speciesBacteroides_plebeius0.1673.36e-131.07e-12
orderBacillales0.1673.45e-131.09e-12
speciesBacteroides_stercoris0.1674.12e-131.3e-12
genusPyramidobacter0.1674.19e-131.3e-12
speciesPyramidobacter_piscolens0.1674.19e-131.3e-12
speciesBifidobacterium_pseudocatenulatum0.1664.42e-131.36e-12
phylumSynergistetes0.1665.53e-131.66e-12
classSynergistia0.1665.53e-131.66e-12
orderSynergistales0.1665.53e-131.66e-12
familySynergistaceae0.1665.53e-131.66e-12
genusCampylobacter0.1656.58e-131.97e-12
genusStreptococcus0.1657.14e-132.12e-12
genusPrevotella0.1657.42e-132.19e-12
familyCampylobacteraceae0.1649.55e-132.8e-12
classEpsilonproteobacteria0.1649.86e-132.86e-12
orderCampylobacterales0.1649.86e-132.86e-12
speciesMethanobrevibacter_smithii-0.1641.04e-122.99e-12
speciesClostridium_citroniae0.1631.36e-123.89e-12
speciesButyrivibrio_crossotus-0.1612.26e-126.43e-12
speciesCoprococcus_sp_ART55_1-0.1612.29e-126.47e-12
speciesDorea_formicigenerans-0.1612.42e-126.8e-12
familyPorphyromonadaceae-0.1612.8e-127.82e-12
genusMethanobrevibacter-0.163.36e-129.33e-12
genusFlavonifractor0.163.94e-121.08e-11
speciesFlavonifractor_plautii0.163.94e-121.08e-11
familyLactobacillaceae0.1594.09e-121.12e-11
phylumEuryarchaeota-0.1594.24e-121.15e-11
genusLactobacillus0.1586.62e-121.79e-11
speciesEnterococcus_faecium0.1577.78e-122.09e-11
classMethanobacteria-0.1578.4e-122.21e-11
orderMethanobacteriales-0.1578.4e-122.21e-11
familyMethanobacteriaceae-0.1578.4e-122.21e-11
genusSolobacterium0.1561.08e-112.82e-11
speciesSolobacterium_moorei0.1561.08e-112.82e-11
speciesRuminococcus_sp_5_1_39BFAA-0.1561.1e-112.85e-11
speciesCampylobacter_concisus0.1561.37e-113.53e-11
speciesHaemophilus_sputorum0.1551.7e-114.36e-11
genusPeptostreptococcus0.1532.55e-116.51e-11
speciesLachnospiraceae_bacterium_8_1_57FAA-0.1514.77e-111.21e-10
speciesHaemophilus_paraphrohaemolyticus0.1515.83e-111.47e-10
speciesAlistipes_onderdonkii-0.1499.24e-112.32e-10
familyPeptostreptococcaceae0.1481.45e-103.62e-10
speciesPrevotella_stercorea0.1471.64e-104.07e-10
genusMorganella0.1462.39e-105.88e-10
speciesMorganella_morganii0.1462.39e-105.88e-10
speciesRothia_mucilaginosa0.1462.51e-106.14e-10
speciesPrevotella_copri0.1434.68e-101.14e-09
genusRuminococcus-0.1435.3e-101.28e-09
speciesKlebsiella_sp_MS_92_30.1435.83e-101.4e-09
speciesMegamonas_rupellensis0.1419.05e-102.17e-09
speciesBlautia_hydrogenotrophica-0.1419.62e-102.29e-09
speciesAnaerostipes_unclassified0.141.15e-092.73e-09
familySiphoviridae-0.141.26e-092.97e-09
speciesStreptococcus_gordonii0.1391.43e-093.36e-09
speciesLactobacillus_fermentum0.1391.61e-093.76e-09
speciesStreptococcus_lutetiensis0.1382.04e-094.74e-09
speciesLachnospiraceae_bacterium_6_1_63FAA0.1373.03e-097.01e-09
speciesMegamonas_hypermegale0.1354.46e-091.03e-08
genusProteus0.1345.84e-091.34e-08
speciesPeptostreptococcus_stomatis0.1336.9e-091.57e-08
speciesAlistipes_indistinctus-0.1338.26e-091.87e-08
speciesEubacterium_ventriosum-0.1329.03e-092.04e-08
orderCoriobacteriales-0.1329.37e-092.1e-08
familyCoriobacteriaceae-0.1329.37e-092.1e-08
speciesRuminococcus_lactaris-0.1329.64e-092.15e-08
familySutterellaceae-0.1329.87e-092.19e-08
familyMyoviridae0.1311.34e-082.96e-08
speciesParaprevotella_xylaniphila-0.131.61e-083.53e-08
genusPeptostreptococcaceae_noname0.131.85e-084.04e-08
familyMicrococcaceae0.1292.45e-085.33e-08
genusRothia0.1282.67e-085.78e-08
speciesProteus_mirabilis0.1283.13e-086.75e-08
speciesMegasphaera_unclassified0.1273.17e-086.8e-08
speciesBacteroides_thetaiotaomicron0.1273.58e-087.65e-08
speciesStreptococcus_vestibularis0.1264.18e-088.89e-08
speciesLachnospiraceae_bacterium_2_1_58FAA0.1264.61e-089.76e-08
speciesLachnospiraceae_bacterium_2_1_46FAA0.1265.01e-081.06e-07
genusAdlercreutzia-0.1255.46e-081.14e-07
speciesAdlercreutzia_equolifaciens-0.1255.46e-081.14e-07
speciesErysipelotrichaceae_bacterium_21_3-0.1247.12e-081.48e-07
speciesBacteroides_intestinalis0.1247.2e-081.49e-07
speciesLeuconostoc_lactis0.1247.43e-081.53e-07
orderBurkholderiales-0.1221.12e-072.3e-07
genusClostridiales_noname0.1221.16e-072.37e-07
speciesRuminococcus_obeum-0.1211.62e-073.3e-07
speciesOdoribacter_unclassified-0.1211.66e-073.36e-07
speciesLactobacillus_sanfranciscensis0.121.82e-073.67e-07
speciesParaprevotella_unclassified-0.1192.29e-074.6e-07
speciesClostridium_bartlettii0.1192.46e-074.92e-07
genusAnaerostipes-0.1182.87e-075.72e-07
genusParaprevotella-0.1182.94e-075.83e-07
speciesStreptococcus_sanguinis0.1173.62e-077.15e-07
familyActinomycetaceae0.1173.78e-077.43e-07
speciesRuminococcus_champanellensis-0.1173.81e-077.46e-07
speciesGemella_morbillorum0.1156.18e-071.21e-06
speciesStreptococcus_pasteurianus0.1156.37e-071.24e-06
familyVeillonellaceae0.1156.75e-071.31e-06
classBetaproteobacteria-0.1147.66e-071.48e-06
speciesBacteroides_coprocola0.1148.13e-071.56e-06
genusActinomyces0.1131.01e-061.93e-06
genusFaecalibacterium-0.1121.16e-062.2e-06
speciesFaecalibacterium_prausnitzii-0.1121.16e-062.2e-06
genusBlautia0.1121.2e-062.27e-06
speciesMegamonas_funiformis0.1121.27e-062.39e-06
speciesOlsenella_unclassified-0.1121.34e-062.51e-06
orderActinomycetales0.1111.6e-062.98e-06
speciesClostridium_clostridioforme0.111.7e-063.16e-06
familyLachnospiraceae-0.1092.11e-063.91e-06
speciesParaprevotella_clara-0.1092.24e-064.13e-06
genusAcidaminococcaceae_unclassified-0.1092.36e-064.33e-06
familyClostridiales_Family_XI_Incertae_Sedis0.1092.42e-064.43e-06
speciesAlistipes_sp_AP11-0.1082.64e-064.81e-06
familyPropionibacteriaceae-0.1073.91e-067.1e-06
speciesEnterobacteria_phage_HK5440.1045.99e-061.08e-05
speciesAlistipes_sp_HGB5-0.1037.62e-061.37e-05
speciesBacteroides_nordii0.1038.7e-061.56e-05
speciesParabacteroides_merdae-0.1021.06e-051.9e-05
speciesLachnospiraceae_bacterium_5_1_63FAA-0.1021.07e-051.91e-05
speciesClostridium_sp_L2_50-0.1011.26e-052.24e-05
speciesAlistipes_finegoldii-0.1011.3e-052.3e-05
speciesRoseburia_unclassified-0.11.44e-052.54e-05
familyAcidaminococcaceae-0.0991.74e-053.05e-05
speciesOscillibacter_sp_KLE_1745-0.0972.53e-054.42e-05
speciesBacteroides_salyersiae0.0963.09e-055.38e-05
speciesBifidobacterium_catenulatum-0.0963.25e-055.64e-05
speciesMethanobrevibacter_unclassified-0.0953.57e-056.17e-05
speciesLactobacillus_vaginalis0.0953.64e-056.27e-05
speciesCoprococcus_eutactus-0.0944.62e-057.93e-05
speciesLactococcus_phage_P680-0.0935.45e-059.32e-05
speciesLactobacillus_gasseri0.0936.1e-050.000104
genusPhascolarctobacterium-0.0926.24e-050.000106
speciesPhascolarctobacterium_succinatutens-0.0926.24e-050.000106
speciesBacteroides_sp_3_1_190.0927.3e-050.000123
genusLambdalikevirus0.0917.43e-050.000125
genusCatenibacterium-0.0917.65e-050.000128
speciesCatenibacterium_mitsuokai-0.0917.65e-050.000128
speciesAcidaminococcus_intestini0.099.42e-050.000157
speciesLactobacillus_crispatus0.099.78e-050.000162
speciesBacteroides_finegoldii0.0890.0001070.000177
speciesBacteroides_pectinophilus-0.0890.0001110.000183
genusSiphoviridae_noname-0.0890.0001190.000194
speciesLactobacillus_amylovorus0.0890.0001190.000194
genusOlsenella-0.0880.0001330.000216
speciesRuminococcus_bromii-0.0880.000150.000243
speciesLactobacillus_acidophilus-0.0870.0001530.000246
speciesRoseburia_intestinalis-0.0870.0001530.000246
speciesLactobacillus_plantarum0.0870.0001620.00026
familyOxalobacteraceae-0.0870.0001630.000261
speciesHoldemania_filiformis-0.0870.0001680.000268
genusBifidobacterium-0.0860.0001840.000292
genusOxalobacter-0.0860.0002010.000317
speciesOxalobacter_formigenes-0.0860.0002010.000317
speciesStreptococcus_mutans0.0860.0002040.000321
genusParvimonas0.0860.0002070.000325
speciesParvimonas_unclassified0.0860.0002090.000327
speciesEubacterium_biforme-0.0860.0002120.00033
orderCaudovirales-0.0850.0002320.00036
phylumActinobacteria-0.0840.0002590.0004
classActinobacteria-0.0840.0002590.0004
orderBifidobacteriales-0.0830.0003020.000463
familyBifidobacteriaceae-0.0830.0003020.000463
speciesBacteroides_dorei-0.0830.0003190.000487
genusParabacteroides-0.0830.0003230.000492
speciesLactobacillus_oris0.0820.000390.000592
genusDialister-0.0810.0004610.000697
speciesPropionibacterium_freudenreichii-0.080.0004980.000751
speciesParabacteroides_sp_D13-0.0790.0005810.000873
speciesLachnospiraceae_bacterium_1_4_56FAA0.0790.0005860.000878
speciesBacteroides_xylanisolvens0.0790.0005990.000895
speciesLachnospiraceae_bacterium_5_1_57FAA0.0790.0006510.000969
speciesBifidobacterium_animalis-0.0770.0008130.00121
speciesEubacterium_eligens-0.0770.0008920.00132
speciesDesulfovibrio_desulfuricans-0.0760.0009870.00146
speciesBacteroides_oleiciplenus0.0760.001010.00149
speciesParabacteroides_goldsteinii0.0750.001120.00164
genusMyoviridae_noname0.0750.001140.00166
speciesPorphyromonas_uenonis0.0750.001140.00166
speciesDialister_invisus-0.0750.00120.00174
speciesBifidobacterium_breve0.0720.00180.00261
speciesOscillibacter_sp_KLE_1728-0.0720.001880.00271
speciesLactococcus_phage_936_sensu_lato-0.0720.00190.00273
speciesMegasphaera_elsdenii0.0710.002060.00296
speciesAcidaminococcus_unclassified-0.0710.002220.00318
speciesBacteroides_sp_1_1_6-0.070.002530.00361
phylumViruses_noname-0.0690.002710.00384
classViruses_noname-0.0690.002710.00384
speciesEubacterium_limosum0.0690.002820.00399
familyClostridiales_noname0.0690.002980.0042
speciesEubacterium_cylindroides-0.0690.003010.00423
genusLeuconostoc0.0680.003160.00443
genusPeptoniphilus0.0680.003340.00466
speciesBifidobacterium_longum-0.0680.003460.00482
speciesBlautia_producta0.0680.003480.00483
speciesEggerthella_lenta0.0670.003660.00507
speciesCoprobacillus_sp_D60.0650.004870.00672
speciesAlistipes_unclassified-0.0650.00520.00716
speciesCoprobacillus_sp_29_10.0640.005340.00733
genusPropionibacterium-0.0640.005430.00743
speciesClostridium_sp_ATCC_BAA_4420.0640.005710.00779
genusTunalikevirus0.0630.006080.00827
speciesBifidobacterium_angulatum-0.0620.007290.00989
genusHoldemania-0.0620.007330.00991
speciesDesulfovibrio_piger-0.0620.007410.00999
speciesCollinsella_tanakaei0.0610.007870.0106
speciesAcidaminococcus_fermentans0.0610.008150.0109
speciesLachnospiraceae_bacterium_1_1_57FAA0.0610.008670.0116
speciesLactococcus_phage_jm2-0.060.009170.0122
genusRoseburia-0.060.009240.0123
genusDesulfovibrio-0.060.009870.0131
speciesBacteroides_salanitronis-0.0590.01130.0149
genusPorphyromonas0.0580.0120.0158
speciesBacteroides_cellulosilyticus-0.0580.01250.0164
speciesHoldemania_unclassified-0.0570.01410.0185
familyBacteroidaceae0.0570.01450.0189
genusBacteroides0.0570.01450.0189
speciesKlebsiella_phage_KP360.0560.01480.0192
speciesSutterella_parvirubra0.0560.01490.0193
genusSutterellaceae_unclassified-0.0550.01780.023
speciesBilophila_unclassified0.0540.01870.0241
speciesClostridium_asparagiforme0.0540.01880.0242
genusBilophila0.0540.02020.0259
speciesBacteroides_barnesiae-0.0520.02350.0301
speciesLactobacillus_ruminis-0.0520.02390.0305
speciesLactococcus_phage_phi7-0.0510.02680.0341
orderAeromonadales0.050.02980.0378
classNegativicutes0.0490.03370.0425
orderSelenomonadales0.0490.03370.0425
speciesBacteroides_sp_2_1_22-0.0480.03690.0464
speciesStreptococcus_parasanguinis0.0480.03790.0476
speciesLactococcus_lactis-0.0470.040.0501
speciesBacteroides_eggerthii0.0470.04270.0533
genusGordonibacter-0.0460.04610.0573
speciesGordonibacter_pamelaeae-0.0460.04610.0573
familyPrevotellaceae0.0450.04920.061
speciesBacteroides_coprophilus0.0450.05240.0647
speciesPorphyromonas_asaccharolytica0.0440.05840.072
speciesPrevotella_bivia0.0440.05950.0731
speciesBilophila_wadsworthia0.0430.06030.0739
speciesAnaerotruncus_colihominis0.0410.07340.0898
speciesCoriobacteriaceae_bacterium_phI-0.0410.07410.0904
classDeltaproteobacteria0.0410.07990.0967
orderDesulfovibrionales0.0410.07990.0967
familyDesulfovibrionaceae0.0410.07990.0967
speciesClostridium_spiroforme-0.040.08070.0974
speciesBacteroides_massiliensis0.040.0870.105
speciesHoldemania_sp_AP20.0390.09080.109
genusCoriobacteriaceae_noname-0.0380.09930.119
speciesErysipelotrichaceae_bacterium_5_2_54FAA-0.0370.1080.129
speciesClostridium_sp_KLE_1755-0.0370.1080.129
speciesLactobacillus_reuteri0.0350.1290.153
genusBurkholderiales_noname0.0290.2060.244
speciesBurkholderiales_bacterium_1_1_470.0290.2060.244
orderPseudomonadales0.0290.2130.251
speciesMitsuokella_multacida-0.0280.2270.267
orderViruses_noname-0.0280.2280.268
speciesDorea_unclassified-0.0280.2320.272
genusLachnospiraceae_noname-0.0270.2360.276
speciesEubacterium_dolichum0.0270.2470.288
familyBurkholderiales_noname0.0270.250.291
speciesRoseburia_inulinivorans-0.0260.2610.303
speciesRuminococcus_torques-0.0260.270.312
genusMethanosphaera-0.0250.2710.312
speciesMethanosphaera_stadtmanae-0.0250.2710.312
speciesErysipelotrichaceae_bacterium_2_2_44A0.0250.280.322
speciesLactococcus_phage_bIL67-0.0250.2870.329
speciesLachnospiraceae_bacterium_3_1_57FAA_CT1-0.0240.2930.335
genusSlackia0.0240.2970.339
speciesLactobacillus_casei_paracasei-0.0240.2990.34
genusButyricimonas-0.0240.30.34
speciesButyricimonas_synergistica-0.0240.30.34
speciesPeptostreptococcus_anaerobius0.0240.3040.343
speciesRuminococcus_sp_JC3040.0230.3170.357
speciesParabacteroides_sp_20_3-0.0230.320.36
speciesTuricibacter_unclassified-0.0230.3310.371
classErysipelotrichia0.0220.3360.374
orderErysipelotrichales0.0220.3360.374
familyErysipelotrichaceae0.0220.3360.374
speciesCollinsella_intestinalis0.0210.3560.395
genusParasutterella0.020.3760.416
speciesParasutterella_excrementihominis0.020.3760.416
genusTuricibacter-0.020.3870.427
genusStaphylococcus-0.020.3970.437
speciesParabacteroides_unclassified0.0190.4120.452
speciesBacteroides_vulgatus-0.0180.4270.468
speciesBacteroides_faecis0.0170.4650.508
speciesCollinsella_unclassified-0.0170.4730.516
speciesLactobacillus_rhamnosus0.0160.4860.529
genusAcidaminococcus0.0160.4890.531
speciesEubacterium_sp_3_1_31-0.0160.4960.537
speciesLactobacillus_delbrueckii-0.0160.50.54
phylumBacteroidetes-0.0150.5280.567
classBacteroidia-0.0150.5290.567
orderBacteroidales-0.0150.5290.567
speciesOdoribacter_laneus-0.0140.5480.587
speciesEggerthella_sp_1_3_56FAA-0.0130.5690.608
speciesBacteroides_sp_4_3_47FAA0.0130.5720.609
speciesDialister_succinatiphilus-0.0130.580.617
speciesErysipelotrichaceae_bacterium_3_1_530.0130.5840.619
speciesParabacteroides_johnsonii0.0120.5940.629
speciesPeptostreptococcaceae_noname_unclassified-0.0120.6020.636
speciesSubdoligranulum_sp_4_3_54A2FAA0.0120.6060.638
familySuccinivibrionaceae-0.0110.6460.677
genusButyricicoccus0.0110.6470.677
speciesButyricicoccus_pullicaecorum0.0110.6470.677
familyPodoviridae0.010.660.689
familyStaphylococcaceae-0.010.6640.692
familyViruses_noname0.0090.690.716
genusViruses_noname0.0090.690.716
speciesBacteroides_ovatus0.0090.6920.716
speciesSlackia_piriformis-0.0090.6980.721
genusLactococcus0.0080.7350.757
speciesBacteroides_caccae0.0050.8150.838
genusSuccinatimonas-0.0050.8340.854
speciesSuccinatimonas_hippei-0.0050.8340.854
speciesStreptococcus_phage_Sfi210.0040.8470.865
speciesTuricibacter_sanguinis0.0040.8530.87
genusErysipelotrichaceae_noname-0.0040.860.875
genusClostridiaceae_noname-0.0040.8640.875
speciesClostridiaceae_bacterium_JC118-0.0040.8640.875
speciesBacteroides_clarus0.0020.9290.939
speciesBifidobacterium_bifidum-0.0020.9380.946
speciesRuminococcus_callidus-0.0020.940.946
speciesParabacteroides_distasonis0.0010.9590.963
speciesBacteroides_fluxus0.00.9830.985
speciesErysipelotrichaceae_bacterium_6_1_450.00.9850.985
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Association of query gene abundance with clinical phenotypes:

Boxplots:


Statistics:

pheno country case_n ctrl_n case_mean ctrl_mean pvalue rank percentile
Type II diabetesDenmark752770.007474630008970.002409811796572.30736625267e-124371.43246
Liver cirrhosisChina1201140.03775758753870.007232712057731.15477012517e-0721127.09463
Crohns diseaseSpain17660.02571650490710.003565519672930.00687687350364740924.6351
Colorectal cancerAustria64350.048930485010.01312836666170.032813842708220296.86493
Ulcerative colitisSpain78660.002091694685540.003565519672930.2780100365881309543.1979
Type II diabetesChina1831850.0269181124070.02151455303850.2795056869151561251.5946
Rheumatoid arthritisChina127980.01812852398820.01541652293440.5040164242141774159.1623
ObesityDenmark1691230.003390042498910.006964762523920.7613621156442528083.1278
Type II diabetesSweden53920.006912228310790.007736488281310.8810503295842635789.255
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Citation:

Nayfach S, Fischbach MA, Pollard KS. MetaQuery: a web server for rapid annotation and quantitative analysis of specific genes in the human gut microbiome. Bioinformatics 2015;31(14). doi:10.1093/bioinformatics/btv382