MetaQuery: quantitative analysis of the human gut microbiome

Results

Estimated gene abundances and results from statistical analyses

Job details:

Submission date: 2021-02-20 18:14:10 PST
Job id & description: 2428, NQO
Query type: protein
Count queries & homologs: 1, 10
Min % identity & max e-value: 30%, 1e-5
Min % query & target coverage: 70%, 70%

Click here to download results

Table of contents:


Gut microbiome genes homologous to your query gene:

query_id target_id status kegg eggnog phylum genus query_cov target_cov percent_identity
AAH07659.13989847CompleteK00355COG2249unknownunknown83.9497.8541.13
AAH07659.13463686CompleteK00355COG2249Proteobacteriaunknown83.2190.0439.83
AAH07659.13443268Lack 5'-endK00355COG2249ProteobacteriaKlebsiella79.9386.2639.21
AAH07659.13477388CompleteK00355COG2249ProteobacteriaKlebsiella79.9386.9238.33
AAH07659.13416290CompleteK00355COG2249ProteobacteriaKlebsiella81.3987.4537.93
AAH07659.13468482CompleteK00355COG2249ProteobacteriaKlebsiella79.9386.9239.57
AAH07659.14711550CompleteK00358COG2249ProteobacteriaHaemophilus72.6389.0530.5
AAH07659.14708688CompleteK00358COG2249ProteobacteriaHaemophilus72.6389.0530.5
AAH07659.14699178CompleteK00358COG2249ProteobacteriaHaemophilus72.6389.0530.5
AAH07659.14811816Lack 3'-endK00358COG2249ProteobacteriaHaemophilus72.6390.430.0
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The abundance of your query across gut microbiome samples:




The prevalence of your query across gut microbiome samples:




Taxonomic groups correlated with your query gene:

tax_level tax_name spearman_rho pvalue qvalue
genusKlebsiella0.7157.33e-2933.46e-290
speciesKlebsiella_pneumoniae0.7015.75e-2771.36e-274
classGammaproteobacteria0.5841.01e-1711.59e-169
speciesHaemophilus_parainfluenzae0.5731.27e-1631.5e-161
genusHaemophilus0.5712.8e-1622.64e-160
orderPasteurellales0.5684.05e-1602.73e-158
familyPasteurellaceae0.5684.05e-1602.73e-158
phylumProteobacteria0.4681.47e-1028.67e-101
genusVeillonella0.4655.42e-1012.84e-99
orderEnterobacteriales0.4616.06e-992.6e-97
familyEnterobacteriaceae0.4616.06e-992.6e-97
speciesVeillonella_unclassified0.458.92e-943.51e-92
genusEnterobacter0.4492.44e-938.86e-92
speciesVeillonella_parvula0.4467.22e-922.43e-90
speciesEnterobacter_cloacae0.4411.02e-893.21e-88
genusSubdoligranulum-0.3935.86e-701.73e-68
speciesSubdoligranulum_unclassified-0.3928.93e-702.48e-68
speciesVeillonella_dispar0.3898.78e-692.3e-67
speciesLachnospiraceae_bacterium_7_1_58FAA-0.3712.96e-627.35e-61
speciesVeillonella_atypica0.3686.53e-611.54e-59
genusActinobacillus0.3654.62e-609.91e-59
speciesActinobacillus_unclassified0.3654.62e-609.91e-59
speciesMegasphaera_micronuciformis0.356.65e-551.36e-53
phylumFusobacteria0.3421.53e-522.78e-51
classFusobacteriia0.3421.53e-522.78e-51
orderFusobacteriales0.3421.53e-522.78e-51
genusFusobacterium0.347.44e-521.3e-50
familyFusobacteriaceae0.3383.44e-515.8e-50
speciesKlebsiella_oxytoca0.3322.46e-494e-48
genusCitrobacter0.3283.43e-485.4e-47
genusEscherichia0.3261.42e-472.16e-46
speciesClostridium_leptum-0.3262.08e-473.07e-46
speciesCitrobacter_freundii0.3253.32e-474.75e-46
speciesCitrobacter_unclassified0.3246.2e-478.61e-46
genusPseudoflavonifractor-0.3143.58e-444.69e-43
speciesPseudoflavonifractor_capillosus-0.3143.58e-444.69e-43
speciesEubacterium_siraeum-0.3121.67e-432.13e-42
speciesEscherichia_coli0.3069.26e-421.15e-40
genusAggregatibacter0.2981.35e-391.63e-38
speciesClostridium_perfringens0.2971.79e-392.11e-38
phylumVerrucomicrobia-0.2941.09e-381.12e-37
classVerrucomicrobiae-0.2941.09e-381.12e-37
orderVerrucomicrobiales-0.2941.09e-381.12e-37
familyVerrucomicrobiaceae-0.2941.09e-381.12e-37
genusAkkermansia-0.2941.09e-381.12e-37
speciesAkkermansia_muciniphila-0.2941.09e-381.12e-37
speciesAnaerotruncus_unclassified-0.2877.28e-377.31e-36
speciesKlebsiella_unclassified0.2772.72e-342.67e-33
familyOscillospiraceae-0.2765.25e-344.96e-33
genusOscillibacter-0.2765.25e-344.96e-33
speciesOscillibacter_unclassified-0.2719e-338.33e-32
speciesStreptococcus_salivarius0.2691.78e-321.62e-31
speciesFusobacterium_nucleatum0.2661.13e-311.01e-30
speciesPrevotella_buccae0.2651.8e-311.57e-30
genusAnaerotruncus-0.2637.37e-316.32e-30
speciesLactobacillus_salivarius0.2594.84e-304.08e-29
speciesFusobacterium_mortiferum0.2595.7e-304.72e-29
speciesAggregatibacter_segnis0.2589.36e-307.62e-29
genusMegasphaera0.2581.05e-298.4e-29
speciesHaemophilus_sputorum0.2571.09e-298.57e-29
speciesCampylobacter_concisus0.2562.23e-291.73e-28
speciesWeissella_confusa0.2562.51e-291.91e-28
speciesStreptococcus_mitis_oralis_pneumoniae0.2553.44e-292.58e-28
orderCoriobacteriales-0.2512.89e-282.1e-27
familyCoriobacteriaceae-0.2512.89e-282.1e-27
speciesEscherichia_unclassified0.2512.97e-282.12e-27
speciesEubacterium_hallii-0.2513.39e-282.39e-27
genusWeissella0.2472.04e-271.42e-26
speciesLachnospiraceae_bacterium_3_1_46FAA-0.2455.01e-273.43e-26
orderLactobacillales0.2441.15e-267.75e-26
classBacilli0.2431.35e-268.97e-26
genusDorea-0.2413.54e-262.32e-25
familyRuminococcaceae-0.2413.83e-262.48e-25
speciesStreptococcus_anginosus0.2372.4e-251.53e-24
speciesDorea_longicatena-0.2373.4e-252.14e-24
genusRuminococcaceae_noname-0.2355.58e-253.42e-24
speciesRuminococcaceae_bacterium_D16-0.2355.58e-253.42e-24
speciesMegamonas_unclassified0.2349.72e-255.88e-24
genusMegamonas0.2331.45e-248.66e-24
speciesClostridium_nexile0.2332.06e-241.22e-23
genusPrevotella0.2322.81e-241.64e-23
speciesBacteroides_plebeius0.2323.52e-242.03e-23
genusPantoea0.237.34e-244.12e-23
speciesPantoea_unclassified0.237.34e-244.12e-23
familyStreptococcaceae0.238.01e-244.45e-23
speciesEnterobacter_aerogenes0.2264.98e-232.73e-22
genusStreptococcus0.2256.85e-233.72e-22
speciesRuminococcus_gnavus0.2258.05e-234.32e-22
speciesLactobacillus_mucosae0.2231.67e-228.86e-22
speciesEubacterium_ramulus-0.2232.02e-221.06e-21
genusCollinsella-0.2222.48e-221.29e-21
speciesMethanobrevibacter_smithii-0.2181.39e-217.13e-21
speciesStreptococcus_australis0.2181.44e-217.31e-21
classClostridia-0.2181.7e-218.45e-21
orderClostridiales-0.2181.7e-218.45e-21
genusCoprococcus-0.2162.87e-211.38e-20
classMethanobacteria-0.2162.9e-211.38e-20
orderMethanobacteriales-0.2162.9e-211.38e-20
familyMethanobacteriaceae-0.2162.9e-211.38e-20
familyVeillonellaceae0.2163.94e-211.86e-20
phylumEuryarchaeota-0.2155.67e-212.65e-20
speciesCollinsella_aerofaciens-0.2149.66e-214.47e-20
genusMethanobrevibacter-0.2131.08e-204.95e-20
genusBarnesiella-0.2131.15e-205.17e-20
speciesBarnesiella_intestinihominis-0.2131.15e-205.17e-20
genusCampylobacter0.2131.52e-206.77e-20
speciesWeissella_cibaria0.2096.72e-202.96e-19
speciesPrevotella_copri0.2089.04e-203.95e-19
speciesCoprococcus_comes-0.2089.75e-204.15e-19
classEpsilonproteobacteria0.2089.76e-204.15e-19
orderCampylobacterales0.2089.76e-204.15e-19
speciesBifidobacterium_dentium0.2089.9e-204.17e-19
familyCampylobacteraceae0.2081.03e-194.3e-19
speciesBacteroides_stercoris0.2071.47e-196.09e-19
speciesBifidobacterium_adolescentis-0.2071.52e-196.24e-19
speciesHaemophilus_paraphrohaemolyticus0.2062.72e-191.11e-18
speciesErysipelotrichaceae_bacterium_21_3-0.2021.17e-184.72e-18
speciesStreptococcus_infantarius0.2021.22e-184.88e-18
genusButyrivibrio-0.22.81e-181.11e-17
speciesLactococcus_garvieae0.1951.46e-175.74e-17
speciesPrevotella_stercorea0.1951.57e-176.12e-17
familyRikenellaceae-0.1951.8e-176.91e-17
genusAlistipes-0.1951.8e-176.91e-17
speciesCoprococcus_catus-0.1951.93e-177.35e-17
genusRuminococcus-0.1952.05e-177.74e-17
speciesRothia_mucilaginosa0.1942.64e-179.89e-17
speciesBlautia_hydrogenotrophica-0.1933.31e-171.23e-16
familyBacillales_noname0.1918.62e-173.15e-16
genusGemella0.1918.62e-173.15e-16
familyBacteroidales_noname-0.1865.21e-161.86e-15
genusBacteroidales_noname-0.1865.21e-161.86e-15
speciesBacteroidales_bacterium_ph8-0.1865.21e-161.86e-15
speciesStreptococcus_thermophilus-0.1841.05e-153.73e-15
orderBacillales0.1813.59e-151.26e-14
speciesRuminococcus_sp_5_1_39BFAA-0.1771.07e-143.74e-14
genusAdlercreutzia-0.1762.08e-147.17e-14
speciesAdlercreutzia_equolifaciens-0.1762.08e-147.17e-14
familyMicrococcaceae0.1752.35e-148.04e-14
genusRothia0.1752.67e-149.07e-14
speciesRuminococcus_torques-0.1743.23e-141.09e-13
speciesStreptococcus_sanguinis0.1734.38e-141.47e-13
speciesAnaerostipes_hadrus-0.1734.84e-141.61e-13
speciesAlistipes_senegalensis-0.1735.29e-141.75e-13
speciesBacteroides_uniformis-0.1682.73e-138.95e-13
speciesStreptococcus_gordonii0.1673.77e-131.23e-12
familyLeuconostocaceae0.1673.93e-131.27e-12
speciesAlistipes_indistinctus-0.1674.07e-131.31e-12
speciesLachnospiraceae_bacterium_3_1_57FAA_CT1-0.1665.13e-131.64e-12
speciesRuminococcus_obeum-0.1665.4e-131.71e-12
genusPyramidobacter0.1649.94e-133.11e-12
speciesPyramidobacter_piscolens0.1649.94e-133.11e-12
phylumActinobacteria-0.1621.83e-125.65e-12
classActinobacteria-0.1621.83e-125.65e-12
speciesKlebsiella_sp_MS_92_30.1621.99e-126.1e-12
phylumSynergistetes0.1612.62e-127.83e-12
classSynergistia0.1612.62e-127.83e-12
orderSynergistales0.1612.62e-127.83e-12
familySynergistaceae0.1612.62e-127.83e-12
speciesFusobacterium_ulcerans0.1612.86e-128.49e-12
speciesBacteroides_coprocola0.1595.06e-121.49e-11
speciesC2likevirus_unclassified-0.1578.66e-122.54e-11
speciesLeuconostoc_lactis0.1561.05e-113.06e-11
speciesBifidobacterium_pseudocatenulatum0.1561.13e-113.27e-11
speciesStreptococcus_vestibularis0.1561.14e-113.28e-11
genusCoprobacter-0.1551.82e-115.17e-11
speciesCoprobacter_fastidiosus-0.1551.82e-115.17e-11
speciesMegamonas_hypermegale0.1542.09e-115.91e-11
speciesMegamonas_rupellensis0.1542.26e-116.35e-11
speciesMegamonas_funiformis0.1532.91e-118.13e-11
familyMyoviridae0.1532.94e-118.16e-11
speciesButyrivibrio_unclassified-0.1533.07e-118.47e-11
speciesAlistipes_sp_AP11-0.1523.94e-111.08e-10
genusC2likevirus-0.1524.43e-111.21e-10
speciesStreptococcus_parasanguinis0.1515.26e-111.43e-10
speciesMethanobrevibacter_unclassified-0.1515.54e-111.49e-10
speciesFusobacterium_varium0.1515.74e-111.54e-10
speciesAlistipes_onderdonkii-0.157.92e-112.11e-10
phylumFirmicutes-0.1491.04e-102.76e-10
genusAnaerostipes-0.1491.09e-102.87e-10
familyPrevotellaceae0.1481.12e-102.94e-10
speciesBacteroides_fragilis0.1481.15e-103e-10
familyPorphyromonadaceae-0.1481.25e-103.24e-10
genusLactobacillus0.1471.77e-104.57e-10
genusOdoribacter-0.1452.64e-106.77e-10
speciesBacteroides_thetaiotaomicron0.1452.82e-107.19e-10
familyLactobacillaceae0.1453e-107.61e-10
genusEnterococcus0.1453.15e-107.95e-10
familyEnterococcaceae0.1453.37e-108.46e-10
speciesDorea_formicigenerans-0.1435.53e-101.38e-09
speciesMitsuokella_unclassified-0.1426.92e-101.72e-09
speciesHoldemania_filiformis-0.1427.74e-101.91e-09
genusDesulfovibrio-0.1419.08e-102.23e-09
familyPeptostreptococcaceae0.141.22e-092.98e-09
speciesOlsenella_unclassified-0.1372.6e-096.33e-09
speciesPropionibacterium_freudenreichii-0.1372.75e-096.66e-09
speciesLactobacillus_fermentum0.1364.03e-099.7e-09
classNegativicutes0.1354.08e-099.72e-09
orderSelenomonadales0.1354.08e-099.72e-09
speciesAlistipes_putredinis-0.1354.1e-099.72e-09
familySiphoviridae-0.1355.08e-091.2e-08
genusPeptostreptococcaceae_noname0.1345.29e-091.24e-08
genusMitsuokella-0.1346.02e-091.41e-08
speciesEubacterium_rectale-0.1328.9e-092.07e-08
speciesDesulfovibrio_desulfuricans-0.1321.01e-082.34e-08
speciesLactococcus_phage_P680-0.1311.33e-083.06e-08
familyEubacteriaceae-0.131.65e-083.78e-08
genusEubacterium-0.131.7e-083.88e-08
speciesCoprobacillus_unclassified0.131.75e-083.97e-08
genusHoldemania-0.1292.03e-084.58e-08
speciesOscillibacter_sp_KLE_1745-0.1282.51e-085.64e-08
speciesRoseburia_unclassified-0.1282.58e-085.77e-08
speciesBacteroides_intestinalis0.1273.79e-088.44e-08
speciesBacteroides_xylanisolvens0.1255.74e-081.27e-07
speciesRoseburia_hominis-0.1256.25e-081.38e-07
genusGordonibacter-0.1221.1e-072.4e-07
speciesGordonibacter_pamelaeae-0.1221.1e-072.4e-07
genusMorganella0.1221.15e-072.49e-07
speciesMorganella_morganii0.1221.15e-072.49e-07
genusOlsenella-0.1221.21e-072.61e-07
speciesOdoribacter_splanchnicus-0.1221.32e-072.83e-07
genusPeptostreptococcus0.121.94e-074.14e-07
speciesClostridium_ramosum0.121.99e-074.23e-07
speciesEnterococcus_faecalis0.122e-074.23e-07
speciesClostridium_bartlettii0.122.14e-074.51e-07
genusSolobacterium0.1182.85e-075.95e-07
speciesSolobacterium_moorei0.1182.85e-075.95e-07
speciesPeptostreptococcus_stomatis0.1183.23e-076.72e-07
speciesRoseburia_inulinivorans0.1164.44e-079.19e-07
speciesAlistipes_shahii-0.1165.2e-071.07e-06
speciesRuminococcus_bromii-0.1156.27e-071.29e-06
speciesSubdoligranulum_sp_4_3_54A2FAA-0.1156.72e-071.37e-06
speciesBacteroides_finegoldii0.1139.46e-071.92e-06
familyPropionibacteriaceae-0.1139.87e-072e-06
speciesLactobacillus_crispatus0.1121.24e-062.5e-06
speciesClostridium_symbiosum0.1121.33e-062.67e-06
genusCoprobacillus0.1111.56e-063.12e-06
speciesBacteroides_salyersiae0.111.72e-063.43e-06
genusMyoviridae_noname0.111.93e-063.83e-06
speciesBifidobacterium_animalis-0.1092.22e-064.38e-06
genusBifidobacterium-0.1092.3e-064.52e-06
classErysipelotrichia-0.1083.13e-066.08e-06
orderErysipelotrichales-0.1083.13e-066.08e-06
familyErysipelotrichaceae-0.1083.13e-066.08e-06
genusPropionibacterium-0.1073.59e-066.94e-06
speciesButyrivibrio_crossotus-0.1073.81e-067.34e-06
speciesStreptococcus_lutetiensis0.1073.85e-067.39e-06
orderBifidobacteriales-0.1064.01e-067.63e-06
familyBifidobacteriaceae-0.1064.01e-067.63e-06
speciesLactobacillus_oris0.1064.2e-067.96e-06
speciesSutterella_wadsworthensis-0.1064.22e-067.97e-06
genusSiphoviridae_noname-0.1055.18e-069.74e-06
speciesErysipelotrichaceae_bacterium_6_1_45-0.1046.62e-061.24e-05
genusErysipelotrichaceae_noname-0.1047.29e-061.36e-05
genusTunalikevirus0.1011.1e-052.04e-05
genusSutterella-0.1011.13e-052.09e-05
speciesEnterococcus_faecium0.11.43e-052.64e-05
speciesOdoribacter_unclassified-0.11.51e-052.76e-05
speciesMegasphaera_unclassified0.11.51e-052.76e-05
speciesOdoribacter_laneus-0.0972.87e-055.23e-05
familyLachnospiraceae-0.0953.87e-057.03e-05
genusProteus0.0953.93e-057.11e-05
speciesKlebsiella_phage_KP360.0954.16e-057.49e-05
speciesLactobacillus_gasseri0.0944.31e-057.74e-05
speciesProteus_mirabilis0.0945.12e-059.15e-05
orderActinomycetales0.0935.15e-059.17e-05
speciesBifidobacterium_longum-0.0917.7e-050.000137
speciesBacteroides_oleiciplenus0.099.83e-050.000174
genusAcidaminococcaceae_unclassified-0.090.00010.000176
speciesLactobacillus_vaginalis0.090.0001040.000182
familyBacteroidaceae0.0890.0001090.00019
genusBacteroides0.0890.0001090.00019
speciesErysipelotrichaceae_bacterium_5_2_54FAA-0.0890.0001180.000205
genusRoseburia0.0870.0001530.000265
familyAcidaminococcaceae-0.0870.0001630.000281
speciesEubacterium_cylindroides-0.0860.0001970.000338
phylumBacteroidetes0.0860.0002020.000343
classBacteroidia0.0860.0002020.000343
orderBacteroidales0.0860.0002020.000343
speciesLachnospiraceae_bacterium_9_1_43BFAA0.0850.0002220.000376
speciesLachnospiraceae_bacterium_5_1_63FAA-0.0850.0002260.000381
speciesStreptococcus_mutans0.0840.0002760.000464
speciesEubacterium_eligens0.0840.0002920.000487
genusFaecalibacterium0.0840.0002930.000487
speciesFaecalibacterium_prausnitzii0.0840.0002930.000487
speciesStreptococcus_pasteurianus0.0830.0003150.000522
speciesDesulfovibrio_piger-0.0820.0003610.000596
speciesCoprococcus_sp_ART55_1-0.0820.0003630.000597
speciesRuminococcus_champanellensis-0.0820.0003690.000605
speciesBacteroides_ovatus0.0820.0003770.000616
speciesEnterobacteria_phage_HK5440.0820.0003790.000617
speciesAlistipes_finegoldii-0.0810.0004320.000701
speciesLactobacillus_sanfranciscensis0.080.0004940.000799
classDeltaproteobacteria-0.080.0005420.000867
orderDesulfovibrionales-0.080.0005420.000867
familyDesulfovibrionaceae-0.080.0005420.000867
genusLachnospiraceae_noname-0.080.0005540.000883
speciesLachnospiraceae_bacterium_2_1_58FAA0.080.0005580.000887
speciesBacteroides_salanitronis-0.0780.0006810.00108
speciesBacteroides_massiliensis0.0780.00070.00111
familyOxalobacteraceae-0.0780.0007340.00115
genusOxalobacter-0.0770.0008270.00129
speciesOxalobacter_formigenes-0.0770.0008270.00129
speciesCoprococcus_eutactus-0.0770.0008450.00132
speciesMegasphaera_elsdenii0.0770.0009210.00143
speciesClostridium_bolteae0.0760.001080.00167
speciesBacteroides_nordii0.0750.001090.00168
speciesEubacterium_ventriosum-0.0750.001170.0018
speciesErysipelotrichaceae_bacterium_2_2_44A-0.0750.001260.00193
speciesClostridium_hathewayi0.0730.00150.00229
speciesBacteroides_cellulosilyticus-0.0730.001640.0025
speciesDialister_invisus-0.0730.001690.00256
genusMethanosphaera-0.0720.001790.00269
speciesMethanosphaera_stadtmanae-0.0720.001790.00269
speciesEubacterium_biforme-0.0720.001790.00269
genusBlautia-0.0720.001840.00276
speciesAcidaminococcus_intestini0.0710.002090.00312
speciesRuminococcus_lactaris-0.070.002290.00341
speciesOscillibacter_sp_KLE_1728-0.070.002420.00359
genusParabacteroides-0.070.002470.00365
speciesBifidobacterium_breve0.070.002590.00382
genusCatenibacterium-0.0690.00280.0041
speciesCatenibacterium_mitsuokai-0.0690.00280.0041
speciesAnaerotruncus_colihominis-0.0690.002990.00437
genusDialister-0.0680.003330.00485
speciesLachnospiraceae_bacterium_6_1_63FAA0.0680.003450.00501
speciesCoriobacteriaceae_bacterium_phI-0.0670.003520.0051
orderCaudovirales-0.0670.003620.00523
speciesBacteroides_faecis0.0660.004040.00581
speciesAlistipes_sp_HGB5-0.0660.00410.00588
speciesClostridium_citroniae0.0660.004110.00588
genusCoriobacteriaceae_noname-0.0660.004490.0064
genusParasutterella0.0660.004530.00642
speciesParasutterella_excrementihominis0.0660.004530.00642
genusBurkholderiales_noname0.0650.005230.00737
speciesBurkholderiales_bacterium_1_1_470.0650.005230.00737
genusClostridium0.0640.005580.00784
genusPhascolarctobacterium-0.0630.006240.00871
speciesPhascolarctobacterium_succinatutens-0.0630.006240.00871
familyBurkholderiales_noname0.0630.00640.00891
familyClostridiaceae0.0620.007430.0103
speciesBifidobacterium_catenulatum-0.060.009620.0133
speciesClostridium_spiroforme-0.0590.01010.0139
speciesLactobacillus_plantarum0.0590.01040.0143
genusClostridiaceae_noname-0.0590.01050.0144
speciesClostridiaceae_bacterium_JC118-0.0590.01050.0144
speciesLactobacillus_acidophilus-0.0590.01080.0147
speciesEubacterium_sp_3_1_31-0.0580.01210.0165
speciesClostridium_sp_KLE_1755-0.0580.01240.0168
speciesEggerthella_unclassified0.0580.01240.0168
speciesClostridiales_bacterium_1_7_47FAA0.0570.01350.0182
speciesBacteroides_sp_3_1_190.0570.01360.0183
speciesGemella_morbillorum0.0570.01380.0185
phylumViruses_noname-0.0570.01430.0191
classViruses_noname-0.0570.01430.0191
classBetaproteobacteria0.0540.02050.0273
speciesAcidaminococcus_unclassified-0.0540.02070.0274
speciesAlistipes_unclassified-0.0530.02150.0284
speciesAcidaminococcus_fermentans0.0530.02160.0285
speciesBacteroides_coprophilus0.0520.02470.0325
speciesParaprevotella_xylaniphila-0.0510.02750.0361
genusLambdalikevirus0.0510.0280.0366
speciesBacteroides_sp_4_3_47FAA0.050.030.0391
speciesCollinsella_tanakaei0.0490.03240.0421
speciesEggerthella_lenta-0.0490.03310.0429
speciesEubacterium_dolichum-0.0490.03370.0436
speciesBacteroides_barnesiae-0.0490.0350.0451
speciesParaprevotella_unclassified-0.0480.03850.0494
genusFlavonifractor0.0480.03860.0494
speciesFlavonifractor_plautii0.0480.03860.0494
speciesBilophila_wadsworthia-0.0470.04290.0547
speciesPeptostreptococcaceae_noname_unclassified0.0470.04360.0555
orderAeromonadales0.0460.0490.0622
genusParaprevotella-0.0450.04920.0623
speciesDorea_unclassified-0.0450.05140.0649
speciesClostridium_clostridioforme-0.0450.05220.0657
speciesSlackia_piriformis-0.0450.05260.066
genusEggerthella0.0450.05310.0665
speciesAnaerostipes_unclassified0.0440.0580.0724
familyViruses_noname0.0440.05920.0735
genusViruses_noname0.0440.05920.0735
speciesLactococcus_lactis-0.0430.06070.0752
speciesParabacteroides_sp_D13-0.0420.06890.0851
speciesCollinsella_intestinalis0.0420.07070.0871
orderBurkholderiales0.0420.07090.0871
speciesParabacteroides_goldsteinii0.0410.07480.0917
familySutterellaceae0.0410.0780.0954
familyActinomycetaceae0.0410.0790.0964
genusLeuconostoc0.0410.07930.0965
familyClostridiales_noname-0.040.08070.0979
speciesLactococcus_phage_phi7-0.040.08230.0996
speciesLachnospiraceae_bacterium_2_1_46FAA0.040.08360.101
speciesLactobacillus_amylovorus0.040.08440.102
speciesParabacteroides_distasonis0.040.08680.104
genusClostridiales_noname0.0390.08860.106
genusActinomyces0.0390.09210.11
speciesLactococcus_phage_jm2-0.0390.09590.114
speciesClostridium_asparagiforme-0.0370.1080.128
familyClostridiales_Family_XI_Incertae_Sedis0.0370.1090.129
speciesParaprevotella_clara-0.0370.1120.132
speciesLachnospiraceae_bacterium_5_1_57FAA-0.0370.1140.135
speciesCoprobacillus_sp_29_1-0.0360.1180.139
speciesRuminococcus_callidus0.0360.1190.14
speciesParvimonas_unclassified0.0360.120.141
genusParvimonas0.0360.1210.141
genusSutterellaceae_unclassified0.0350.1290.15
genusBilophila-0.0350.1320.153
familyPodoviridae0.0340.1360.158
speciesLachnospiraceae_bacterium_1_1_57FAA0.0340.1430.165
speciesPorphyromonas_asaccharolytica-0.0330.1520.175
familyStaphylococcaceae0.0330.1560.18
speciesBacteroides_pectinophilus-0.0320.1640.188
speciesBilophila_unclassified-0.0320.170.195
speciesEubacterium_limosum-0.0310.1740.199
speciesHoldemania_unclassified-0.0310.1760.201
speciesBacteroides_vulgatus0.0310.1790.204
speciesParabacteroides_unclassified-0.0310.1830.208
speciesLachnospiraceae_bacterium_1_4_56FAA-0.0310.1840.208
speciesBacteroides_sp_1_1_6-0.030.1910.216
speciesRoseburia_intestinalis0.030.1940.219
familySuccinivibrionaceae-0.030.1950.219
speciesParabacteroides_merdae-0.030.1960.22
speciesLactobacillus_reuteri0.0290.2140.239
speciesTuricibacter_sanguinis0.0290.2180.243
speciesLactobacillus_delbrueckii-0.0280.2210.246
speciesLachnospiraceae_bacterium_8_1_57FAA-0.0280.2290.254
speciesClostridium_sp_L2_50-0.0270.2420.268
speciesLactococcus_phage_936_sensu_lato-0.0270.2470.273
genusSuccinatimonas-0.0270.2490.274
speciesSuccinatimonas_hippei-0.0270.2490.274
genusPorphyromonas-0.0260.2610.286
speciesBacteroides_eggerthii0.0250.2790.306
speciesPorphyromonas_uenonis0.0240.2950.322
speciesDialister_succinatiphilus0.0240.3010.328
speciesLactobacillus_casei_paracasei-0.0240.3070.334
speciesPeptostreptococcus_anaerobius-0.0240.3080.334
speciesParabacteroides_sp_20_3-0.0230.3220.349
genusStaphylococcus0.0220.3510.379
orderViruses_noname-0.020.3890.419
speciesParabacteroides_johnsonii0.020.3970.427
speciesSutterella_parvirubra0.0190.4130.443
speciesHoldemania_sp_AP20.0180.4280.458
speciesLactococcus_phage_bIL670.0180.4320.461
genusSlackia-0.0170.4680.499
speciesBacteroides_fluxus0.0160.4880.519
speciesBlautia_producta-0.0140.5310.563
speciesCollinsella_unclassified-0.0140.5520.584
speciesPrevotella_bivia0.0130.5820.615
speciesCoprobacillus_sp_D6-0.0130.5840.615
speciesEggerthella_sp_1_3_56FAA-0.0120.5970.626
speciesRuminococcus_sp_JC304-0.0120.5970.626
genusLactococcus0.0120.6090.636
speciesClostridium_sp_ATCC_BAA_4420.0120.6090.636
speciesMitsuokella_multacida-0.0120.610.636
speciesBacteroides_caccae0.010.6540.68
speciesBifidobacterium_angulatum-0.010.6660.691
genusPeptoniphilus0.010.680.704
speciesBacteroides_dorei-0.0090.7060.729
genusButyricicoccus-0.0070.7510.772
speciesButyricicoccus_pullicaecorum-0.0070.7510.772
speciesTuricibacter_unclassified0.0070.7770.797
speciesBacteroides_sp_2_1_220.0060.7880.807
speciesBacteroides_clarus0.0060.7980.815
speciesStreptococcus_phage_Sfi210.0050.8160.832
speciesBifidobacterium_bifidum-0.0050.8220.836
genusTuricibacter0.0050.8320.844
speciesLactobacillus_rhamnosus-0.0050.8330.844
speciesErysipelotrichaceae_bacterium_3_1_53-0.0030.8840.893
orderPseudomonadales0.0030.8910.899
speciesLactobacillus_ruminis0.0020.9340.94
genusAcidaminococcus-0.0010.9540.958
genusButyricimonas-0.0010.9580.958
speciesButyricimonas_synergistica-0.0010.9580.958
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Association of query gene abundance with clinical phenotypes:

Boxplots:


Statistics:

pheno country case_n ctrl_n case_mean ctrl_mean pvalue rank percentile
Liver cirrhosisChina1201140.01958787481330.00216927053216.72720394228e-146162.06927
Rheumatoid arthritisChina127980.008149096650050.006692898381330.026278824870420206.73625
ObesityDenmark1691230.0006537573824650.001837808921540.0716338824787609420.0388
Type II diabetesDenmark752770.0006765648066920.0005685453542880.10616277113986532.3368
Ulcerative colitisSpain78660.0007475149994190.0002942857475160.175077258357979932.325
Type II diabetesChina1831850.005912424872830.005383415132740.1794079507991264541.7892
Colorectal cancerAustria64350.004365114345530.005988082860090.3088396288381267742.8915
Type II diabetesSweden53920.001160377298640.0002550493561280.433380260471384446.8811
Crohns diseaseSpain17660.01584187797190.0002942857475160.7156006914372674888.9377
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Citation:

Nayfach S, Fischbach MA, Pollard KS. MetaQuery: a web server for rapid annotation and quantitative analysis of specific genes in the human gut microbiome. Bioinformatics 2015;31(14). doi:10.1093/bioinformatics/btv382