MetaQuery: quantitative analysis of the human gut microbiome

Results

Estimated gene abundances and results from statistical analyses

Job details:

Submission date: 2021-02-23 00:20:32 PST
Job id & description: 2430, FE
Query type: protein
Count queries & homologs: 1, 10
Min % identity & max e-value: 30%, 1e-5
Min % query & target coverage: 70%, 70%

Click here to download results

Table of contents:


Gut microbiome genes homologous to your query gene:

query_id target_id status kegg eggnog phylum genus query_cov target_cov percent_identity
FE3523492CompleteK03928COG1647FirmicutesEnterococcus97.1993.7745.68
FE3706374CompleteK03928COG1647FirmicutesLactobacillus98.3996.3745.97
FE3553063CompleteK03928COG1647FirmicutesLactobacillus97.5995.745.34
FE3645753CompleteK03928COG1647FirmicutesLactobacillus100.099.643.65
FE3650165CompleteK03928COG1647FirmicutesLactobacillus100.099.643.65
FE3650243CompleteK03928COG1647FirmicutesEnterococcus97.1995.2241.74
FE3643189CompleteK03928COG1647FirmicutesEnterococcus97.1995.2241.74
FE3898056CompleteK03928COG1647FirmicutesLactobacillus92.3797.0641.81
FE3820563CompleteK03928COG1647FirmicutesGranulicatella93.9894.6339.57
FE4857981Lack 5'-endK03928COG1647FirmicutesLactobacillus73.994.8740.86
Click on arrows to sort table data. Shift+click to sort by multiple columns.

The abundance of your query across gut microbiome samples:




The prevalence of your query across gut microbiome samples:




Taxonomic groups correlated with your query gene:

tax_level tax_name spearman_rho pvalue qvalue
genusEnterococcus0.5028.23e-1203.88e-117
familyEnterococcaceae0.54.39e-1191.04e-116
orderLactobacillales0.4657.82e-1011.23e-98
classBacilli0.4633.85e-1004.54e-98
speciesEnterococcus_faecium0.4593.54e-983.34e-96
familyStreptococcaceae0.4071e-757.87e-74
genusStreptococcus0.3991.99e-721.34e-70
orderActinomycetales0.3942.56e-701.51e-68
speciesStreptococcus_mitis_oralis_pneumoniae0.3745.51e-632.89e-61
familyActinomycetaceae0.3641.05e-594.1e-58
familyBacillales_noname0.3641.11e-594.1e-58
genusGemella0.3641.11e-594.1e-58
genusActinomyces0.3641.13e-594.1e-58
speciesStreptococcus_sanguinis0.361.79e-586.03e-57
familyLactobacillaceae0.362.17e-586.83e-57
speciesStreptococcus_gordonii0.3573.45e-571.02e-55
genusLactobacillus0.3564.66e-571.29e-55
speciesEnterococcus_faecalis0.3482.79e-547.32e-53
speciesStreptococcus_anginosus0.3453.03e-537.53e-52
orderBacillales0.3443.72e-538.78e-52
speciesStreptococcus_salivarius0.3331.11e-492.49e-48
speciesStreptococcus_parasanguinis0.3322.71e-495.81e-48
speciesLactobacillus_casei_paracasei0.3315.72e-491.17e-47
speciesStreptococcus_vestibularis0.3282.76e-485.43e-47
genusRothia0.321.18e-452.23e-44
familyMicrococcaceae0.3191.48e-452.69e-44
speciesRothia_mucilaginosa0.3114.37e-437.64e-42
speciesLactobacillus_vaginalis0.3075.03e-428.48e-41
phylumBacteroidetes-0.3012.25e-403.47e-39
classBacteroidia-0.3012.28e-403.47e-39
orderBacteroidales-0.3012.28e-403.47e-39
speciesBifidobacterium_dentium0.2989.56e-401.41e-38
speciesLactobacillus_gasseri0.2916.11e-388.74e-37
genusSolobacterium0.2831.14e-351.54e-34
speciesSolobacterium_moorei0.2831.14e-351.54e-34
speciesLactobacillus_fermentum0.2758e-341.05e-32
genusPeptostreptococcus0.2711.02e-321.3e-31
speciesStreptococcus_mutans0.2683.74e-324.65e-31
speciesLactobacillus_oris0.2547.73e-299.36e-28
genusBlautia0.2441.16e-261.37e-25
familyBacteroidaceae-0.2331.96e-242.2e-23
genusBacteroides-0.2331.96e-242.2e-23
speciesStreptococcus_australis0.2299.73e-241.07e-22
speciesOscillibacter_unclassified-0.2272.3e-232.47e-22
familyOscillospiraceae-0.2264.53e-234.51e-22
genusOscillibacter-0.2264.53e-234.51e-22
phylumActinobacteria0.2264.59e-234.51e-22
classActinobacteria0.2264.59e-234.51e-22
speciesBacteroides_uniformis-0.2256.1e-235.88e-22
speciesLactobacillus_crispatus0.2231.42e-221.34e-21
familyPorphyromonadaceae-0.2223.11e-222.88e-21
speciesLactobacillus_rhamnosus0.2214.34e-223.94e-21
speciesPeptostreptococcus_stomatis0.2199.71e-228.65e-21
classDeltaproteobacteria-0.2181.85e-211.56e-20
orderDesulfovibrionales-0.2181.85e-211.56e-20
familyDesulfovibrionaceae-0.2181.85e-211.56e-20
speciesStreptococcus_thermophilus0.2164.17e-213.45e-20
speciesMegasphaera_micronuciformis0.2147.03e-215.72e-20
genusParabacteroides-0.2148.07e-216.46e-20
speciesLactobacillus_salivarius0.2148.25e-216.49e-20
classGammaproteobacteria0.2121.73e-201.34e-19
speciesFusobacterium_nucleatum0.2112.54e-201.93e-19
speciesLactobacillus_delbrueckii0.2071.54e-191.15e-18
orderBifidobacteriales0.2052.8e-192.03e-18
familyBifidobacteriaceae0.2052.8e-192.03e-18
speciesKlebsiella_oxytoca0.2053.35e-192.4e-18
genusBilophila-0.2045.98e-194.21e-18
genusOdoribacter-0.2036.31e-194.38e-18
familyRikenellaceae-0.2021.09e-187.35e-18
genusAlistipes-0.2021.09e-187.35e-18
genusBifidobacterium0.2021.25e-188.31e-18
speciesBilophila_unclassified-0.2011.45e-189.51e-18
speciesClostridium_ramosum0.1994.31e-182.79e-17
speciesOdoribacter_splanchnicus-0.1984.91e-183.13e-17
familyLeuconostocaceae0.1985.72e-183.6e-17
speciesLachnospiraceae_bacterium_7_1_58FAA-0.1951.66e-171.03e-16
genusLactococcus0.1934.5e-172.76e-16
speciesLactobacillus_reuteri0.1924.86e-172.94e-16
phylumFirmicutes0.1918.7e-175.2e-16
speciesRuminococcus_sp_5_1_39BFAA0.1882.78e-161.64e-15
genusEggerthella0.1882.89e-161.68e-15
speciesEggerthella_unclassified0.1865.31e-163.03e-15
genusVeillonella0.1865.33e-163.03e-15
speciesVeillonella_parvula0.1865.91e-163.32e-15
genusPantoea0.1858.79e-164.82e-15
speciesPantoea_unclassified0.1858.79e-164.82e-15
orderCoriobacteriales0.1831.32e-157.08e-15
familyCoriobacteriaceae0.1831.32e-157.08e-15
speciesClostridium_perfringens0.1822.27e-151.2e-14
speciesRuminococcus_gnavus0.1781.06e-145.56e-14
orderEnterobacteriales0.1761.99e-141.02e-13
familyEnterobacteriaceae0.1761.99e-141.02e-13
speciesErysipelotrichaceae_bacterium_2_2_44A0.1752.12e-141.08e-13
genusPropionibacterium0.1752.68e-141.35e-13
genusLeuconostoc0.1752.83e-141.41e-13
speciesVeillonella_atypica0.1743.62e-141.78e-13
speciesAlistipes_shahii-0.1743.9e-141.9e-13
speciesBilophila_wadsworthia-0.1744.16e-142e-13
speciesVeillonella_dispar0.1734.46e-142.13e-13
speciesLactococcus_lactis0.1735.33e-142.52e-13
speciesCoprobacillus_unclassified0.1725.92e-142.77e-13
speciesBifidobacterium_animalis0.1726.21e-142.87e-13
familyPeptostreptococcaceae0.1728.11e-143.72e-13
genusCoprobacillus0.1718.71e-143.95e-13
genusCitrobacter0.171.22e-135.48e-13
speciesEggerthella_lenta0.171.59e-137.08e-13
orderBurkholderiales-0.1691.71e-137.54e-13
speciesBifidobacterium_longum0.1691.78e-137.78e-13
genusAnaerostipes0.1682.4e-131.04e-12
familyClostridiales_Family_XI_Incertae_Sedis0.1665.74e-132.46e-12
classBetaproteobacteria-0.1648.38e-133.56e-12
speciesGemella_morbillorum0.1631.38e-125.82e-12
familySutterellaceae-0.1612.62e-121.09e-11
speciesCitrobacter_unclassified0.1586.81e-122.82e-11
genusEscherichia0.1551.45e-115.95e-11
speciesLactobacillus_mucosae0.1551.76e-117.16e-11
speciesWeissella_cibaria0.1523.59e-111.45e-10
genusPeptostreptococcaceae_noname0.1523.67e-111.47e-10
genusWeissella0.1523.87e-111.53e-10
speciesParvimonas_unclassified0.1515.06e-111.98e-10
genusParvimonas0.1515.08e-111.98e-10
familyPropionibacteriaceae0.1491.06e-104.1e-10
speciesCitrobacter_freundii0.1481.35e-105.18e-10
speciesRuminococcus_obeum0.1471.62e-106.17e-10
speciesVeillonella_unclassified0.1462.11e-107.97e-10
speciesEscherichia_coli0.1462.17e-108.13e-10
classErysipelotrichia0.1462.24e-108.2e-10
orderErysipelotrichales0.1462.24e-108.2e-10
familyErysipelotrichaceae0.1462.24e-108.2e-10
speciesAlistipes_indistinctus-0.1452.92e-101.06e-09
speciesLactobacillus_plantarum0.1443.46e-101.25e-09
familyLachnospiraceae0.1443.67e-101.31e-09
speciesAlistipes_senegalensis-0.1444.07e-101.44e-09
speciesLactococcus_garvieae0.1444.17e-101.47e-09
speciesBacteroides_ovatus-0.1435.17e-101.81e-09
speciesCampylobacter_concisus0.1435.9e-102.05e-09
speciesEscherichia_unclassified0.1427.45e-102.57e-09
speciesAnaerostipes_hadrus0.1418.41e-102.88e-09
speciesAlistipes_putredinis-0.1381.83e-096.21e-09
genusActinobacillus0.1372.97e-099.94e-09
speciesActinobacillus_unclassified0.1372.97e-099.94e-09
speciesBacteroides_cellulosilyticus-0.1363.32e-091.1e-08
speciesPropionibacterium_freudenreichii0.1363.91e-091.29e-08
speciesRuminococcus_torques0.1354.13e-091.35e-08
speciesWeissella_confusa0.1345.5e-091.79e-08
genusKlebsiella0.1345.71e-091.85e-08
speciesClostridium_bartlettii0.1337.84e-092.52e-08
speciesAlistipes_finegoldii-0.1338.38e-092.67e-08
genusFusobacterium0.1321.03e-083.26e-08
speciesBifidobacterium_breve0.1311.17e-083.68e-08
genusAnaerotruncus-0.1311.29e-084.03e-08
speciesBacteroides_dorei-0.1311.3e-084.04e-08
phylumFusobacteria0.1311.39e-084.23e-08
classFusobacteriia0.1311.39e-084.23e-08
orderFusobacteriales0.1311.39e-084.23e-08
speciesLachnospiraceae_bacterium_6_1_63FAA0.131.67e-085.05e-08
familyFusobacteriaceae0.1292.16e-086.49e-08
speciesBacteroides_xylanisolvens-0.1273.27e-089.77e-08
classEpsilonproteobacteria0.1274.03e-081.19e-07
orderCampylobacterales0.1274.03e-081.19e-07
speciesRuminococcus_sp_JC3040.1264.55e-081.33e-07
genusCampylobacter0.1255.45e-081.59e-07
genusDorea0.1247.96e-082.3e-07
familyCampylobacteraceae0.1221.09e-073.14e-07
speciesLachnospiraceae_bacterium_5_1_63FAA0.1221.12e-073.2e-07
genusErysipelotrichaceae_noname0.1221.16e-073.3e-07
speciesParabacteroides_merdae-0.1221.2e-073.39e-07
speciesAnaerotruncus_unclassified-0.1221.28e-073.6e-07
genusOxalobacter-0.1211.41e-073.91e-07
speciesOxalobacter_formigenes-0.1211.41e-073.91e-07
familyBacteroidales_noname-0.1211.6e-074.37e-07
genusBacteroidales_noname-0.1211.6e-074.37e-07
speciesBacteroidales_bacterium_ph8-0.1211.6e-074.37e-07
genusMegasphaera0.121.75e-074.75e-07
genusAggregatibacter0.121.84e-074.96e-07
speciesAlistipes_onderdonkii-0.1192.19e-075.87e-07
speciesErysipelotrichaceae_bacterium_6_1_450.1192.33e-076.21e-07
speciesBacteroides_thetaiotaomicron-0.1173.58e-079.49e-07
speciesLachnospiraceae_bacterium_2_1_58FAA0.1173.91e-071.03e-06
familyOxalobacteraceae-0.1174.03e-071.06e-06
speciesStreptococcus_lutetiensis0.1174.23e-071.1e-06
speciesRoseburia_hominis-0.1165.1e-071.32e-06
speciesBacteroides_vulgatus-0.1155.75e-071.48e-06
speciesLeuconostoc_lactis0.1148.31e-072.13e-06
genusEnterobacter0.1148.46e-072.16e-06
speciesBlautia_producta0.1148.58e-072.18e-06
genusLachnospiraceae_noname0.1139.16e-072.31e-06
speciesEnterobacter_cloacae0.1121.25e-063.14e-06
speciesParabacteroides_distasonis-0.1121.27e-063.17e-06
speciesBifidobacterium_bifidum0.111.72e-064.27e-06
speciesKlebsiella_unclassified0.112.03e-065.02e-06
speciesBacteroides_caccae-0.1092.27e-065.58e-06
genusGordonibacter0.1083.12e-067.59e-06
speciesGordonibacter_pamelaeae0.1083.12e-067.59e-06
speciesStreptococcus_infantarius0.1064.12e-069.97e-06
speciesClostridium_nexile0.1064.69e-061.13e-05
speciesLachnospiraceae_bacterium_9_1_43BFAA0.1055.12e-061.23e-05
genusOlsenella0.1055.79e-061.38e-05
speciesLachnospiraceae_bacterium_5_1_57FAA0.1046.01e-061.43e-05
orderPasteurellales0.1037.32e-061.72e-05
familyPasteurellaceae0.1037.32e-061.72e-05
speciesAggregatibacter_segnis0.1037.36e-061.72e-05
speciesLactobacillus_amylovorus0.1037.45e-061.73e-05
speciesHaemophilus_parainfluenzae0.1038.48e-061.96e-05
genusHaemophilus0.1029.36e-062.16e-05
speciesCollinsella_aerofaciens0.1029.54e-062.19e-05
genusDesulfovibrio-0.1029.6e-062.19e-05
speciesPrevotella_buccae0.1021e-052.27e-05
familyMyoviridae0.1021.03e-052.33e-05
orderPseudomonadales0.1021.06e-052.38e-05
genusRoseburia-0.1011.3e-052.91e-05
speciesKlebsiella_pneumoniae0.11.43e-053.18e-05
genusCollinsella0.11.56e-053.46e-05
speciesHaemophilus_sputorum0.0991.65e-053.64e-05
phylumProteobacteria0.0991.66e-053.64e-05
genusRuminococcus0.0991.77e-053.87e-05
speciesEubacterium_hallii0.0991.78e-053.87e-05
speciesHaemophilus_paraphrohaemolyticus0.0982.14e-054.63e-05
speciesTuricibacter_sanguinis0.0982.23e-054.81e-05
genusProteus0.0982.34e-055.02e-05
speciesClostridium_spiroforme0.0972.66e-055.68e-05
speciesLactococcus_phage_bIL670.0972.69e-055.72e-05
phylumViruses_noname0.0972.78e-055.86e-05
classViruses_noname0.0972.78e-055.86e-05
speciesDorea_formicigenerans0.0962.98e-056.25e-05
speciesEubacterium_eligens-0.0953.8e-057.94e-05
speciesEnterobacter_aerogenes0.0935.71e-050.000119
classClostridia0.0926.78e-050.00014
orderClostridiales0.0926.78e-050.00014
orderCaudovirales0.099.06e-050.000186
genusTuricibacter0.0880.0001280.00026
speciesEubacterium_siraeum-0.0880.0001280.00026
familyStaphylococcaceae0.0880.0001450.000294
genusCoprobacter-0.0870.000160.000321
speciesCoprobacter_fastidiosus-0.0870.000160.000321
speciesLachnospiraceae_bacterium_1_4_56FAA0.0870.0001650.00033
genusSubdoligranulum-0.0870.0001790.000356
speciesSubdoligranulum_unclassified-0.0860.0001820.000361
speciesKlebsiella_sp_MS_92_30.0860.0001960.000387
speciesRoseburia_inulinivorans-0.0840.0002780.000547
speciesLachnospiraceae_bacterium_3_1_46FAA-0.0840.0002930.000574
speciesParabacteroides_goldsteinii-0.0830.0003140.000612
genusHoldemania-0.0820.0003820.000742
familyVeillonellaceae0.0810.0004810.00093
speciesDesulfovibrio_desulfuricans-0.0810.0004840.000931
speciesStreptococcus_phage_Sfi210.0810.0004850.000931
genusBarnesiella-0.0810.0004910.000931
speciesParaprevotella_xylaniphila-0.0810.0004910.000931
speciesBarnesiella_intestinihominis-0.0810.0004910.000931
phylumVerrucomicrobia-0.080.0005170.000957
classVerrucomicrobiae-0.080.0005170.000957
orderVerrucomicrobiales-0.080.0005170.000957
familyVerrucomicrobiaceae-0.080.0005170.000957
genusAkkermansia-0.080.0005170.000957
speciesAkkermansia_muciniphila-0.080.0005170.000957
genusSiphoviridae_noname0.080.0005290.000975
genusMorganella0.0790.0006040.0011
speciesMorganella_morganii0.0790.0006040.0011
speciesProteus_mirabilis0.0790.0006550.00119
genusParasutterella-0.0770.0008350.00151
speciesParasutterella_excrementihominis-0.0770.0008350.00151
speciesDorea_longicatena0.0770.0008560.00154
speciesBifidobacterium_catenulatum0.0760.0009680.00174
genusPseudoflavonifractor-0.0760.0010.00178
speciesPseudoflavonifractor_capillosus-0.0760.0010.00178
speciesBacteroides_intestinalis-0.0750.001120.00199
genusButyricimonas-0.0750.001170.00206
speciesButyricimonas_synergistica-0.0750.001170.00206
speciesBlautia_hydrogenotrophica0.0740.001350.00237
familyBurkholderiales_noname-0.0740.001460.00255
genusBurkholderiales_noname-0.0730.001480.00257
speciesBurkholderiales_bacterium_1_1_47-0.0730.001480.00257
genusClostridium0.0730.001580.00273
genusRuminococcaceae_noname-0.0720.001710.00293
speciesRuminococcaceae_bacterium_D16-0.0720.001710.00293
speciesTuricibacter_unclassified0.0720.001760.00301
genusStaphylococcus0.0720.001770.00302
speciesLactobacillus_sanfranciscensis0.0720.001970.00334
speciesBifidobacterium_pseudocatenulatum0.0710.002010.0034
speciesOlsenella_unclassified0.0710.002050.00346
familyClostridiaceae0.0710.002060.00346
speciesClostridium_clostridioforme0.0710.002130.00357
orderViruses_noname0.070.002290.00382
speciesHoldemania_filiformis-0.070.002410.00401
speciesPeptostreptococcus_anaerobius0.070.002550.00422
speciesEnterobacteria_phage_HK5440.070.002580.00426
speciesErysipelotrichaceae_bacterium_3_1_530.0690.002920.0048
speciesSutterella_wadsworthensis-0.0680.003080.00505
speciesDesulfovibrio_piger-0.0680.003130.00511
speciesAnaerostipes_unclassified0.0670.00350.0057
speciesPeptostreptococcaceae_noname_unclassified0.0670.003540.00574
speciesBacteroides_clarus-0.0660.00430.00695
genusSutterellaceae_unclassified-0.0660.004360.00702
speciesErysipelotrichaceae_bacterium_21_30.0660.004460.00716
genusAdlercreutzia0.0650.004740.00756
speciesAdlercreutzia_equolifaciens0.0650.004740.00756
genusSutterella-0.0650.005050.00803
speciesRuminococcus_champanellensis-0.0650.005160.00817
speciesParaprevotella_clara-0.0650.005230.00826
genusButyrivibrio-0.0620.007240.0114
speciesCoprococcus_comes0.0620.007380.0116
speciesLachnospiraceae_bacterium_1_1_57FAA0.0620.00760.0119
familySiphoviridae0.0620.007640.0119
genusParaprevotella-0.0610.007940.0123
genusMyoviridae_noname0.0610.00880.0136
classNegativicutes0.060.009020.0138
orderSelenomonadales0.060.009020.0138
speciesParaprevotella_unclassified-0.060.009030.0138
genusPeptoniphilus0.060.009620.0147
speciesBifidobacterium_adolescentis0.0590.01110.0169
speciesEubacterium_dolichum0.0580.01160.0176
speciesBacteroides_nordii-0.0580.01180.0179
familyClostridiales_noname-0.0580.01190.0179
speciesRuminococcus_lactaris-0.0580.01210.0182
familyPrevotellaceae-0.0570.01360.0204
speciesAcidaminococcus_unclassified0.0570.01420.0212
genusAcidaminococcus0.0540.01870.0278
speciesDialister_invisus0.0540.01980.0294
speciesBacteroides_salyersiae-0.0530.02290.0339
familySuccinivibrionaceae-0.0520.02510.037
genusPorphyromonas0.0510.02620.0385
speciesCollinsella_tanakaei-0.0510.02830.0415
genusSuccinatimonas-0.050.03010.0438
speciesSuccinatimonas_hippei-0.050.03010.0438
speciesMegasphaera_elsdenii0.050.03210.0466
classMethanobacteria-0.0490.03590.0516
orderMethanobacteriales-0.0490.03590.0516
familyMethanobacteriaceae-0.0490.03590.0516
speciesClostridium_symbiosum0.0490.0360.0516
speciesFusobacterium_mortiferum0.0480.03630.0519
phylumEuryarchaeota-0.0480.03680.0525
genusMethanobrevibacter-0.0470.04010.057
speciesParabacteroides_unclassified-0.0470.04060.0575
speciesEggerthella_sp_1_3_56FAA0.0470.04310.0609
speciesCoprococcus_catus0.0470.04380.0617
genusDialister0.0460.04720.0663
genusFaecalibacterium-0.0450.05140.0718
speciesFaecalibacterium_prausnitzii-0.0450.05140.0718
speciesEubacterium_ventriosum-0.0440.0560.078
speciesEubacterium_limosum0.0440.05630.0782
speciesBacteroides_pectinophilus-0.0440.05720.0792
speciesClostridium_asparagiforme-0.0440.05910.0816
speciesErysipelotrichaceae_bacterium_5_2_54FAA0.0430.06130.0844
genusLambdalikevirus0.0430.0620.0851
speciesMitsuokella_unclassified-0.0430.06240.0854
genusClostridiaceae_noname-0.0430.06350.0864
speciesClostridiaceae_bacterium_JC118-0.0430.06350.0864
speciesOscillibacter_sp_KLE_1745-0.0430.06460.0876
speciesAcidaminococcus_intestini0.0430.06480.0876
speciesMethanobrevibacter_smithii-0.0420.06660.0898
genusC2likevirus0.0420.06690.09
genusCoprococcus0.0420.06840.0916
genusMegamonas0.0420.06850.0916
genusSlackia0.0420.06960.0928
speciesMegamonas_unclassified0.0410.07290.0969
speciesPorphyromonas_uenonis0.0410.07520.0997
speciesSubdoligranulum_sp_4_3_54A2FAA0.0410.07590.1
familyViruses_noname0.0410.07760.102
genusViruses_noname0.0410.07760.102
genusMitsuokella-0.040.08210.108
speciesEubacterium_sp_3_1_31-0.040.08450.11
speciesButyrivibrio_crossotus-0.0390.08910.116
speciesFusobacterium_ulcerans0.0390.08980.117
genusFlavonifractor-0.0390.09170.119
speciesFlavonifractor_plautii-0.0390.09170.119
speciesMitsuokella_multacida-0.0390.09380.121
familyPodoviridae0.0380.1050.135
speciesBacteroides_faecis-0.0370.1050.135
speciesPorphyromonas_asaccharolytica0.0370.1090.139
speciesEubacterium_rectale-0.0370.1090.139
familyRuminococcaceae0.0360.1170.149
speciesCollinsella_unclassified-0.0360.1210.154
speciesC2likevirus_unclassified0.0350.1270.161
speciesButyrivibrio_unclassified-0.0340.1360.172
speciesBacteroides_sp_2_1_22-0.0330.150.189
speciesMethanobrevibacter_unclassified-0.0330.1530.192
speciesParabacteroides_sp_D13-0.0320.1660.207
speciesClostridium_bolteae0.0320.1660.207
speciesLactococcus_phage_phi7-0.0320.1690.21
speciesCoprococcus_eutactus-0.0310.1770.22
speciesBacteroides_fragilis-0.0310.1790.222
speciesMegasphaera_unclassified0.0310.180.222
speciesKlebsiella_phage_KP36-0.030.1880.232
speciesClostridium_sp_L2_50-0.0290.2080.256
speciesClostridium_hathewayi0.0290.2160.265
speciesAcidaminococcus_fermentans-0.0280.2230.272
speciesBacteroides_stercoris-0.0280.2230.272
speciesRoseburia_intestinalis-0.0280.2320.282
speciesCoprobacillus_sp_D60.0280.2340.284
speciesPrevotella_bivia0.0270.2380.288
speciesAnaerotruncus_colihominis-0.0270.240.29
speciesFusobacterium_varium0.0270.2410.29
speciesClostridium_leptum-0.0260.2520.303
speciesMegamonas_rupellensis0.0260.2550.305
speciesMegamonas_hypermegale0.0260.2560.306
speciesPrevotella_stercorea-0.0260.2580.308
speciesBacteroides_sp_1_1_6-0.0260.2640.314
speciesBacteroides_fluxus0.0250.2730.324
speciesCollinsella_intestinalis0.0250.2740.324
genusCatenibacterium0.0240.2940.346
speciesCatenibacterium_mitsuokai0.0240.2940.346
genusEubacterium-0.0240.2990.351
speciesCoprococcus_sp_ART55_1-0.0240.3010.353
familyEubacteriaceae-0.0240.3090.361
speciesLactobacillus_ruminis-0.0230.310.361
speciesHoldemania_unclassified-0.0230.3110.362
speciesClostridium_citroniae-0.0230.3130.363
genusClostridiales_noname-0.0230.3240.375
genusTunalikevirus-0.0230.3250.375
speciesBifidobacterium_angulatum0.0220.3450.397
speciesEubacterium_cylindroides0.0220.3510.403
speciesBacteroides_oleiciplenus-0.0210.3580.41
speciesParabacteroides_johnsonii-0.0210.3650.417
speciesCoprobacillus_sp_29_10.020.3790.432
speciesBacteroides_massiliensis-0.020.3840.437
speciesParabacteroides_sp_20_30.0190.4090.464
speciesEubacterium_ramulus0.0190.4140.469
genusButyricicoccus0.0190.4230.476
speciesButyricicoccus_pullicaecorum0.0190.4230.476
speciesOscillibacter_sp_KLE_1728-0.0180.4240.476
speciesBacteroides_sp_3_1_19-0.0180.4270.479
speciesBacteroides_plebeius-0.0180.4450.498
speciesLactococcus_phage_P6800.0170.4690.523
speciesBacteroides_sp_4_3_47FAA-0.0160.4770.53
genusPhascolarctobacterium-0.0160.4780.53
speciesPhascolarctobacterium_succinatutens-0.0160.4780.53
speciesSutterella_parvirubra0.0150.5040.557
speciesSlackia_piriformis-0.0150.5070.559
speciesAlistipes_unclassified0.0150.5140.566
speciesLachnospiraceae_bacterium_3_1_57FAA_CT10.0140.5310.583
genusAcidaminococcaceae_unclassified-0.0140.5320.583
speciesMegamonas_funiformis0.0140.5560.607
genusPrevotella-0.0140.5590.609
genusCoriobacteriaceae_noname0.0130.5690.619
speciesAlistipes_sp_AP110.0130.5790.628
genusPyramidobacter0.0130.5810.628
speciesPyramidobacter_piscolens0.0130.5810.628
speciesLactococcus_phage_936_sensu_lato-0.0130.5850.63
speciesAlistipes_sp_HGB5-0.0120.5910.635
speciesLachnospiraceae_bacterium_8_1_57FAA0.0120.6010.645
genusMethanosphaera0.0120.6050.646
speciesMethanosphaera_stadtmanae0.0120.6050.646
speciesOdoribacter_unclassified-0.0120.6060.646
speciesCoriobacteriaceae_bacterium_phI0.0120.610.648
speciesClostridium_sp_ATCC_BAA_442-0.0110.6220.66
speciesRoseburia_unclassified0.0110.6450.683
speciesRuminococcus_bromii0.0110.6470.683
speciesBacteroides_coprocola-0.010.6640.7
speciesLactobacillus_acidophilus0.010.670.704
phylumSynergistetes0.0090.7050.735
classSynergistia0.0090.7050.735
orderSynergistales0.0090.7050.735
familySynergistaceae0.0090.7050.735
speciesOdoribacter_laneus0.0080.7240.753
speciesStreptococcus_pasteurianus-0.0080.7440.77
speciesLactococcus_phage_jm2-0.0080.7450.77
familyAcidaminococcaceae0.0070.7460.77
speciesRuminococcus_callidus-0.0060.7890.813
speciesBacteroides_barnesiae0.0060.8070.83
speciesClostridium_sp_KLE_1755-0.0050.8270.849
speciesBacteroides_salanitronis0.0050.8340.854
speciesDorea_unclassified0.0050.8380.856
speciesBacteroides_coprophilus0.0040.8490.866
orderAeromonadales0.0030.8920.907
speciesHoldemania_sp_AP2-0.0030.8950.907
speciesBacteroides_eggerthii-0.0030.8950.907
speciesPrevotella_copri-0.0020.9190.929
speciesBacteroides_finegoldii-0.0020.9220.93
speciesClostridiales_bacterium_1_7_47FAA-0.0010.9490.955
speciesLachnospiraceae_bacterium_2_1_46FAA0.0010.9620.965
speciesDialister_succinatiphilus0.0010.9630.965
speciesEubacterium_biforme-0.0010.9720.972
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Association of query gene abundance with clinical phenotypes:

Boxplots:


Statistics:

pheno country case_n ctrl_n case_mean ctrl_mean pvalue rank percentile
Liver cirrhosisChina1201140.0003063540704753.68711235488e-053.53843927889e-0914744.95146
Type II diabetesChina1831850.0007368081786837.09041986195e-050.0123398527842402513.3018
Type II diabetesSweden53920.002919881710560.0002822169321020.0950773662127345411.6966
Ulcerative colitisSpain78660.0001236947841068.92264271035e-050.122481762211789526.0441
Type II diabetesDenmark752770.0001954990748533.77358131623e-050.1373382332751101936.1196
Colorectal cancerAustria64350.001279711113860.0008787206239580.138834881739651822.0531
Crohns diseaseSpain17660.0003835015275038.92264271035e-050.3819408020032107270.0648
Rheumatoid arthritisChina127980.001247113624920.0006401095013290.7901568208082466782.259
ObesityDenmark1691235.53759905938e-050.0002192838974280.9105469891792858593.9956
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Citation:

Nayfach S, Fischbach MA, Pollard KS. MetaQuery: a web server for rapid annotation and quantitative analysis of specific genes in the human gut microbiome. Bioinformatics 2015;31(14). doi:10.1093/bioinformatics/btv382