MetaQuery: quantitative analysis of the human gut microbiome

Results

Estimated abundances and results from statistical analyses

Job details:

Query type: function
Database: eggnog
Level: gene_family
Name: NOG78538
Description: Antibiotic-Transport integral membrane leucine and alanine and valine rich protein ABC transporter

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The abundance of NOG78538 across gut microbiome samples:





The prevalence of NOG78538 across gut microbiome samples:





Association of NOG78538 abundance with clinical phenotypes:

Boxplots:


Statistics:

pheno country case_n ctrl_n case_mean ctrl_mean p_value rank percentile
Crohns diseaseSpain17660.04889286097170.02453950476870.0032882259114600919.98
Type II diabetesDenmark752770.01381246796930.009673868277480.00588990677466372512.2103
Type II diabetesChina1831850.03627536063510.0239793237960.0101164186176371912.2906
Colorectal cancerAustria64350.008188237692820.00317940547040.0884475497872451615.2778
Rheumatoid arthritisChina127980.01661923200080.01327403409020.18999619447860928.7091
ObesityDenmark1691230.008918424068930.01067696065670.4073264153821711056.2625
Ulcerative colitisSpain78660.02135655824680.02453950476870.561561310012064068.0873
Liver cirrhosisChina1201140.01989416207420.01665440221340.6921072075722663389.4656
Type II diabetesSweden53920.006955454019740.007603981887190.7725670833832354779.7393
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Citation:

Nayfach S, Fischbach MA, Pollard KS. MetaQuery: a web server for rapid annotation and quantitative analysis of specific genes in the human gut microbiome. Bioinformatics 2015;31(14). doi:10.1093/bioinformatics/btv382