MetaQuery: quantitative analysis of the human gut microbiome

Results

Estimated abundances and results from statistical analyses

Job details:

Query type: function
Database: eggnog
Level: gene_family
Name: NOG79673
Description: ABC transporter substrate-binding protein

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The abundance of NOG79673 across gut microbiome samples:





The prevalence of NOG79673 across gut microbiome samples:





Association of NOG79673 abundance with clinical phenotypes:

Boxplots:


Statistics:

pheno country case_n ctrl_n case_mean ctrl_mean p_value rank percentile
Type II diabetesChina1831850.007176638633610.006897880206890.0159569793253439714.5312
Ulcerative colitisSpain78660.00455080834290.003431095834150.0398176068791424313.9968
Crohns diseaseSpain17660.01252461712320.003431095834150.09269083112071353044.9859
ObesityDenmark1691230.005580125684630.00636345133980.3359421220891502549.4065
Rheumatoid arthritisChina127980.01117008068950.01012309951880.4228958359281547251.5957
Liver cirrhosisChina1201140.01323662457770.004891705203480.4537993537072376879.8414
Colorectal cancerAustria64350.009784014834620.01212464302910.5508286185631947265.88
Type II diabetesSweden53920.006986076756680.006801495517910.7194509163192186574.0416
Type II diabetesDenmark752770.005866195746540.005573480397290.8613058221312779391.1037
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Citation:

Nayfach S, Fischbach MA, Pollard KS. MetaQuery: a web server for rapid annotation and quantitative analysis of specific genes in the human gut microbiome. Bioinformatics 2015;31(14). doi:10.1093/bioinformatics/btv382