MetaQuery: quantitative analysis of the human gut microbiome

Results

Estimated abundances and results from statistical analyses

Job details:

Query type: function
Database: eggnog
Level: gene_family
Name: bactNOG100123
Description: ABC transporter integral membrane protein

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The abundance of bactNOG100123 across gut microbiome samples:





The prevalence of bactNOG100123 across gut microbiome samples:





Association of bactNOG100123 abundance with clinical phenotypes:

Boxplots:


Statistics:

pheno country case_n ctrl_n case_mean ctrl_mean p_value rank percentile
Liver cirrhosisChina1201140.00.0001487773953530.000367951310331637121.3998
Ulcerative colitisSpain78665.31469081761e-050.0001853112663740.000790455636445151.69888
Crohns diseaseSpain17664.47089705096e-060.0001853112663740.0100840707044811326.9759
ObesityDenmark1691230.0001454644107070.0002096356368280.0591634374859544917.9179
Type II diabetesDenmark752770.0001195265987190.0001723846718560.2157432704551345044.0882
Type II diabetesChina1831851.74841442502e-056.13230804447e-060.2457080637181464948.412
Rheumatoid arthritisChina127983.50081079271e-053.96910318345e-060.4079428590821498649.9733
Type II diabetesSweden53925.90350432503e-052.26691412629e-050.5401232558141711557.9563
Colorectal cancerAustria64358.11821394109e-064.24451427534e-060.6600743021162177773.6788
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Citation:

Nayfach S, Fischbach MA, Pollard KS. MetaQuery: a web server for rapid annotation and quantitative analysis of specific genes in the human gut microbiome. Bioinformatics 2015;31(14). doi:10.1093/bioinformatics/btv382