MetaQuery: quantitative analysis of the human gut microbiome

Results

Estimated abundances and results from statistical analyses

Job details:

Query type: function
Database: eggnog
Level: gene_family
Name: bactNOG10180
Description: ABC transporter, permease protein

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The abundance of bactNOG10180 across gut microbiome samples:





The prevalence of bactNOG10180 across gut microbiome samples:





Association of bactNOG10180 abundance with clinical phenotypes:

Boxplots:


Statistics:

pheno country case_n ctrl_n case_mean ctrl_mean p_value rank percentile
Liver cirrhosisChina1201140.02997775552190.03242723985060.00357310478017910230.5738
Type II diabetesChina1831850.02601844835940.03395386146240.0136935814006417213.7876
Crohns diseaseSpain17660.03163655360250.04196726954090.07741072578111293943.0224
Type II diabetesDenmark752770.02828345489380.03151522783340.0807309669228883528.9589
Type II diabetesSweden53920.05510922365160.06393586420630.3066312535151053935.6891
Colorectal cancerAustria64350.05374752362880.06835450250660.3660338765111421348.0867
Ulcerative colitisSpain78660.04264561085440.04196726954090.5151979818281950064.3251
ObesityDenmark1691230.03053763248750.03264045330640.7181531147452442180.3032
Rheumatoid arthritisChina127980.04454724426570.04186885137760.7340283410962329977.6953
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Citation:

Nayfach S, Fischbach MA, Pollard KS. MetaQuery: a web server for rapid annotation and quantitative analysis of specific genes in the human gut microbiome. Bioinformatics 2015;31(14). doi:10.1093/bioinformatics/btv382