MetaQuery: quantitative analysis of the human gut microbiome

Results

Estimated abundances and results from statistical analyses

Job details:

Query type: function
Database: eggnog
Level: gene_family
Name: bactNOG18992
Description: ABC transporter, permease protein

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The abundance of bactNOG18992 across gut microbiome samples:





The prevalence of bactNOG18992 across gut microbiome samples:





Association of bactNOG18992 abundance with clinical phenotypes:

Boxplots:


Statistics:

pheno country case_n ctrl_n case_mean ctrl_mean p_value rank percentile
Liver cirrhosisChina1201140.0122463524310.01750624041490.008034387152041040634.9558
Rheumatoid arthritisChina127980.007484065736350.006348081600550.010442571053110703.56821
Type II diabetesSweden53920.003702378185150.001758888752920.01704432281936332.14358
Type II diabetesChina1831850.01424195571140.0102092966030.0181699378971462715.2913
ObesityDenmark1691230.007141295633120.005550472448610.056536276979530817.4542
Ulcerative colitisSpain78660.005685880870890.005494171818720.2584461987281250741.2582
Crohns diseaseSpain17660.01322109655940.005494171818720.2965987625721912463.5877
Colorectal cancerAustria64350.001463172305530.0007129113896680.6002033988072047369.2685
Type II diabetesDenmark752770.006188091822940.006513248300350.6525020764092383178.1165
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Citation:

Nayfach S, Fischbach MA, Pollard KS. MetaQuery: a web server for rapid annotation and quantitative analysis of specific genes in the human gut microbiome. Bioinformatics 2015;31(14). doi:10.1093/bioinformatics/btv382