MetaQuery: quantitative analysis of the human gut microbiome

Results

Estimated abundances and results from statistical analyses

Job details:

Query type: function
Database: eggnog
Level: gene_family
Name: firmNOG01403
Description: ABC transporter, permease protein

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The abundance of firmNOG01403 across gut microbiome samples:





The prevalence of firmNOG01403 across gut microbiome samples:





Association of firmNOG01403 abundance with clinical phenotypes:

Boxplots:


Statistics:

pheno country case_n ctrl_n case_mean ctrl_mean p_value rank percentile
Liver cirrhosisChina1201142.37649040924e-058.1700052537e-050.02519447473261274442.8096
Crohns diseaseSpain17663.8885148516e-065.42626381282e-050.1535503266681555551.719
ObesityDenmark1691236.69586515642e-055.66536701454e-050.172733328271008033.1459
Type II diabetesChina1831855.55547506208e-053.90300325848e-050.473113059582039867.4113
Type II diabetesDenmark752775.97168386836e-056.29701542089e-050.5060651868952064167.6599
Type II diabetesSweden53922.95155199031e-059.88864869727e-050.5271649957241680156.893
Colorectal cancerAustria64357.46934686049e-052.46437424461e-050.5327644048051904264.4268
Ulcerative colitisSpain78665.97266665298e-055.42626381282e-050.5532192455822043667.4144
Rheumatoid arthritisChina127985.41991261787e-056.41337761891e-050.7082546929032251275.0725
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Citation:

Nayfach S, Fischbach MA, Pollard KS. MetaQuery: a web server for rapid annotation and quantitative analysis of specific genes in the human gut microbiome. Bioinformatics 2015;31(14). doi:10.1093/bioinformatics/btv382