MetaQuery: quantitative analysis of the human gut microbiome

Results

Estimated abundances and results from statistical analyses

Job details:

Query type: function
Database: eggnog
Level: gene_family
Name: firmNOG02197
Description: ABC transporter, permease protein

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The abundance of firmNOG02197 across gut microbiome samples:





The prevalence of firmNOG02197 across gut microbiome samples:





Association of firmNOG02197 abundance with clinical phenotypes:

Boxplots:


Statistics:

pheno country case_n ctrl_n case_mean ctrl_mean p_value rank percentile
Colorectal cancerAustria64350.0002852276296618.90903237243e-050.009783723563136562.21952
Type II diabetesSweden53920.0001536138533990.000125365299260.045554129796416445.56722
Ulcerative colitisSpain78660.0001209640098556.37317132879e-050.0876154781337657621.6929
Type II diabetesDenmark752772.71569185619e-051.24994941197e-050.1412119031831113136.4867
Crohns diseaseSpain17669.64169842465e-066.37317132879e-050.2710052584081857861.7722
Rheumatoid arthritisChina127982.39466454496e-051.74948877337e-050.291056826741190539.7005
ObesityDenmark1691231.54055413077e-058.197989217e-060.318086619991455547.861
Liver cirrhosisChina1201141.45653042558e-067.12020182778e-060.5602823658662497383.8893
Type II diabetesChina1831855.21920788049e-052.01580072973e-050.6495494039642405779.5036
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Citation:

Nayfach S, Fischbach MA, Pollard KS. MetaQuery: a web server for rapid annotation and quantitative analysis of specific genes in the human gut microbiome. Bioinformatics 2015;31(14). doi:10.1093/bioinformatics/btv382