MetaQuery: quantitative analysis of the human gut microbiome

Results

Estimated abundances and results from statistical analyses

Job details:

Query type: function
Database: eggnog
Level: gene_family
Name: firmNOG08193
Description: ABC transporter, permease protein

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The abundance of firmNOG08193 across gut microbiome samples:





The prevalence of firmNOG08193 across gut microbiome samples:





Association of firmNOG08193 abundance with clinical phenotypes:

Boxplots:


Statistics:

pheno country case_n ctrl_n case_mean ctrl_mean p_value rank percentile
Type II diabetesChina1831850.003862294117120.002729126381270.0934821036701920530.4207
Ulcerative colitisSpain78660.006113225120090.003664234702940.102228605594711223.4611
Rheumatoid arthritisChina127980.00613445096040.002758103207550.185760261272841528.0622
Colorectal cancerAustria64350.01216026839030.02956637130450.217460511955947032.0409
Crohns diseaseSpain17660.004327961795880.003664234702940.2428587741911784959.3483
Liver cirrhosisChina1201140.002170202572630.002210687682170.3896193684292294277.0667
ObesityDenmark1691230.006877147460570.003074763343030.6923950104132373278.0376
Type II diabetesSweden53920.006239342711070.006297334648760.7496808009572301077.9191
Type II diabetesDenmark752770.004227614201760.005339189761350.7639100142262598085.1608
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Citation:

Nayfach S, Fischbach MA, Pollard KS. MetaQuery: a web server for rapid annotation and quantitative analysis of specific genes in the human gut microbiome. Bioinformatics 2015;31(14). doi:10.1093/bioinformatics/btv382