MetaQuery: quantitative analysis of the human gut microbiome

Results

Estimated abundances and results from statistical analyses

Job details:

Query type: taxa
Database: mOTU
Level: species
Name: Clostridium ramosum (ref-1269)
Description: None

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The abundance of Clostridium ramosum (ref-1269) across gut microbiome samples:





The prevalence of Clostridium ramosum (ref-1269) across gut microbiome samples:





Association of Clostridium ramosum (ref-1269) abundance with clinical phenotypes:

Boxplots:


Statistics:

pheno country case_n ctrl_n case_mean ctrl_mean p_value rank percentile
Liver cirrhosisChina1201140.0007184714386490.0001933024334874.21698051214e-08399.39759
Crohns diseaseSpain17660.002034124983960.0004190999239175.97861172193e-0751.13379
Type II diabetesChina1831850.00190735933390.000504026834014.70592699287e-0630.704225
Type II diabetesDenmark752770.0002368785574587.4611418859e-050.064687322918810022.3714
Type II diabetesSweden53920.0003640379339710.0001730423303790.1192907646228920.4128
Ulcerative colitisSpain78660.0005024916999270.0004190999239170.47524635524529967.191
ObesityDenmark1691233.03736558614e-050.000142193441140.66531851322134978.781
Rheumatoid arthritisChina127980.0005350698267570.0004821415566070.69804236764832174.8252
Colorectal cancerAustria64350.001284582293010.001732911298780.79581055755836984.4394
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Citation:

Nayfach S, Fischbach MA, Pollard KS. MetaQuery: a web server for rapid annotation and quantitative analysis of specific genes in the human gut microbiome. Bioinformatics 2015;31(14). doi:10.1093/bioinformatics/btv382