MetaQuery: quantitative analysis of the human gut microbiome

Results

Estimated abundances and results from statistical analyses

Job details:

Query type: taxa
Database: mOTU
Level: species
Name: Clostridium scindens (ref-1606)
Description: None

Click here to download results

The abundance of Clostridium scindens (ref-1606) across gut microbiome samples:





The prevalence of Clostridium scindens (ref-1606) across gut microbiome samples:





Association of Clostridium scindens (ref-1606) abundance with clinical phenotypes:

Boxplots:


Statistics:

pheno country case_n ctrl_n case_mean ctrl_mean p_value rank percentile
Rheumatoid arthritisChina127980.0001315267849746.72732141619e-050.12365175811711526.8065
Liver cirrhosisChina1201146.15136690896e-052.54078668343e-050.17417075684730172.5301
Crohns diseaseSpain17660.001119731589970.0004326909703690.19732132324224254.8753
Type II diabetesChina1831850.0002852771934147.41516011514e-050.19791481709215636.6197
Type II diabetesDenmark752775.28572544047e-051.47779777339e-050.22562048223319744.0716
Colorectal cancerAustria64350.0005489617133416.66841797861e-050.22602633963512227.9176
Ulcerative colitisSpain78660.0002233391891190.0004326909703690.62636217487234677.7528
Type II diabetesSweden53920.0001047951078730.0001022858763580.75462398026835481.1927
ObesityDenmark1691231.53718178107e-051.37888571032e-050.80926137284239288.4876
Click on arrows to sort table data. Shift+click to sort by multiple columns.

Citation:

Nayfach S, Fischbach MA, Pollard KS. MetaQuery: a web server for rapid annotation and quantitative analysis of specific genes in the human gut microbiome. Bioinformatics 2015;31(14). doi:10.1093/bioinformatics/btv382