MetaQuery: quantitative analysis of the human gut microbiome

Results

Estimated abundances and results from statistical analyses

Job details:

Query type: taxa
Database: mOTU
Level: species
Name: Clostridium sp. L2-50 (ref-1593)
Description: None

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The abundance of Clostridium sp. L2-50 (ref-1593) across gut microbiome samples:





The prevalence of Clostridium sp. L2-50 (ref-1593) across gut microbiome samples:





Association of Clostridium sp. L2-50 (ref-1593) abundance with clinical phenotypes:

Boxplots:


Statistics:

pheno country case_n ctrl_n case_mean ctrl_mean p_value rank percentile
Liver cirrhosisChina1201140.0002434571110540.002376036970010.00214511724714434.6988
Crohns diseaseSpain17660.0004937480916650.003076962274250.021405841479912327.8912
Type II diabetesSweden53920.005220099140210.006221302592410.08635394455816815.5963
Type II diabetesChina1831850.001852474494310.002295349616450.11382365148511025.8216
Rheumatoid arthritisChina127980.001587518346470.002484912877940.50201363483827263.4033
Colorectal cancerAustria64350.00221909250330.002491985326030.53845274620128164.3021
Ulcerative colitisSpain78660.005254203750650.003076962274250.67927074029735880.4494
ObesityDenmark1691230.002633239850090.003743615758170.76448119670437484.4244
Type II diabetesDenmark752770.002834262735280.00309948046360.85113486729540791.0515
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Citation:

Nayfach S, Fischbach MA, Pollard KS. MetaQuery: a web server for rapid annotation and quantitative analysis of specific genes in the human gut microbiome. Bioinformatics 2015;31(14). doi:10.1093/bioinformatics/btv382