MetaQuery: quantitative analysis of the human gut microbiome

Results

Estimated abundances and results from statistical analyses

Job details:

Query type: taxa
Database: mOTU
Level: species
Name: Clostridium spiroforme (ref-1270)
Description: None

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The abundance of Clostridium spiroforme (ref-1270) across gut microbiome samples:





The prevalence of Clostridium spiroforme (ref-1270) across gut microbiome samples:





Association of Clostridium spiroforme (ref-1270) abundance with clinical phenotypes:

Boxplots:


Statistics:

pheno country case_n ctrl_n case_mean ctrl_mean p_value rank percentile
Crohns diseaseSpain17665.28222928235e-050.0003690463152590.048229138924415034.0136
Type II diabetesDenmark752777.5209163643e-050.0001605209321220.065664800995410222.8188
Type II diabetesChina1831850.0001584319943623.29832177172e-050.06663238849798419.7183
Rheumatoid arthritisChina127980.0001465988743384.58219676562e-050.08378417709738720.2797
ObesityDenmark1691230.0001731638764370.0001408507337210.46855379156428865.0113
Type II diabetesSweden53920.0004321466593190.0005252848556060.67909855236831472.0183
Liver cirrhosisChina1201148.51144381369e-053.96803060807e-050.72154118440638893.494
Ulcerative colitisSpain78660.000226595537360.0003690463152590.96306356659644098.8764
Colorectal cancerAustria64350.0004608094554130.0002402028740020.99020000409143198.627
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Citation:

Nayfach S, Fischbach MA, Pollard KS. MetaQuery: a web server for rapid annotation and quantitative analysis of specific genes in the human gut microbiome. Bioinformatics 2015;31(14). doi:10.1093/bioinformatics/btv382