MetaQuery: quantitative analysis of the human gut microbiome

Results

Estimated abundances and results from statistical analyses

Job details:

Query type: taxa
Database: mOTU
Level: species
Name: Clostridium symbiosum (ref-1600)
Description: None

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The abundance of Clostridium symbiosum (ref-1600) across gut microbiome samples:





The prevalence of Clostridium symbiosum (ref-1600) across gut microbiome samples:





Association of Clostridium symbiosum (ref-1600) abundance with clinical phenotypes:

Boxplots:


Statistics:

pheno country case_n ctrl_n case_mean ctrl_mean p_value rank percentile
Liver cirrhosisChina1201140.0005364813496430.0001174969008388.39287945555e-09327.71084
Crohns diseaseSpain17660.001357947384730.0001840952222080.001378214030796815.4195
Type II diabetesChina1831850.0009270849627320.0004742076315120.00811500566769419.62441
Type II diabetesDenmark752770.0001151248299317.93928187087e-050.0141670954415712.7517
Rheumatoid arthritisChina127980.0001271763309170.0001798781240760.05773354259626314.6853
ObesityDenmark1691237.0513763355e-059.14762064375e-050.13324889517512127.3138
Type II diabetesSweden53920.0002197226484849.82441700817e-050.15189387497710022.9358
Colorectal cancerAustria64350.0004052220701370.0005837052442130.30805712718717740.5034
Ulcerative colitisSpain78660.0002309111606850.0001840952222080.55108475714832272.3596
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Citation:

Nayfach S, Fischbach MA, Pollard KS. MetaQuery: a web server for rapid annotation and quantitative analysis of specific genes in the human gut microbiome. Bioinformatics 2015;31(14). doi:10.1093/bioinformatics/btv382