MetaQuery: quantitative analysis of the human gut microbiome

Results

Estimated abundances and results from statistical analyses

Job details:

Query type: taxa
Database: metaphlan2
Level: species
Name: Clostridium_asparagiforme
Description: None

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The abundance of Clostridium_asparagiforme across gut microbiome samples:





The prevalence of Clostridium_asparagiforme across gut microbiome samples:





Association of Clostridium_asparagiforme abundance with clinical phenotypes:

Boxplots:


Statistics:

pheno country case_n ctrl_n case_mean ctrl_mean p_value rank percentile
Type II diabetesDenmark752770.0003953011531720.0002035436351740.00016539188138682.94118
Rheumatoid arthritisChina127980.0002240822656660.0001366812279280.0015038465030572.5641
Type II diabetesChina1831850.0005704493720840.000398684361770.01167060827874215.6716
Ulcerative colitisSpain78660.0001569452704215.52171720906e-050.1146609243858229.7101
Crohns diseaseSpain17660.0003524259281135.52171720906e-050.22042529163514151.6483
Type II diabetesSweden53920.0001521809604150.0001298634725440.2419033098158734.8
Colorectal cancerAustria64350.0004112208854140.0001135646551790.2923852252879436.2934
ObesityDenmark1691230.0001906176735660.0002203419254630.35803168391111041.5094
Liver cirrhosisChina1201140.0002344783008460.0001480396765030.48337357368523186.8421
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Citation:

Nayfach S, Fischbach MA, Pollard KS. MetaQuery: a web server for rapid annotation and quantitative analysis of specific genes in the human gut microbiome. Bioinformatics 2015;31(14). doi:10.1093/bioinformatics/btv382