MetaQuery: quantitative analysis of the human gut microbiome

Results

Estimated abundances and results from statistical analyses

Job details:

Query type: taxa
Database: metaphlan2
Level: species
Name: Clostridium_bartlettii
Description: None

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The abundance of Clostridium_bartlettii across gut microbiome samples:





The prevalence of Clostridium_bartlettii across gut microbiome samples:





Association of Clostridium_bartlettii abundance with clinical phenotypes:

Boxplots:


Statistics:

pheno country case_n ctrl_n case_mean ctrl_mean p_value rank percentile
Type II diabetesDenmark752770.0001387028247880.0003618109248095.91414211278e-0741.47059
Rheumatoid arthritisChina127980.00127555043240.001059476710330.06356809407985419.7802
Liver cirrhosisChina1201140.0007587659731340.0009406958174110.10357575693116863.1579
Type II diabetesSweden53920.00289320929990.002968388312070.2665132237199437.6
Ulcerative colitisSpain78660.0007898836893550.0006935533155210.26862164208713147.4638
Crohns diseaseSpain17660.008658659986590.0006935533155210.33941615998317764.8352
Colorectal cancerAustria64350.002381061832560.003298388805130.77673880535921482.6255
Type II diabetesChina1831850.00032972253120.0004919857723130.80425398546523788.4328
ObesityDenmark1691230.0002931873413140.0004582637348960.998026046199265100.0
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Citation:

Nayfach S, Fischbach MA, Pollard KS. MetaQuery: a web server for rapid annotation and quantitative analysis of specific genes in the human gut microbiome. Bioinformatics 2015;31(14). doi:10.1093/bioinformatics/btv382