MetaQuery: quantitative analysis of the human gut microbiome

Results

Estimated abundances and results from statistical analyses

Job details:

Query type: taxa
Database: metaphlan2
Level: species
Name: Clostridium_bolteae
Description: None

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The abundance of Clostridium_bolteae across gut microbiome samples:





The prevalence of Clostridium_bolteae across gut microbiome samples:





Association of Clostridium_bolteae abundance with clinical phenotypes:

Boxplots:


Statistics:

pheno country case_n ctrl_n case_mean ctrl_mean p_value rank percentile
Type II diabetesChina1831850.0121345802780.001700783461935.24754948301e-0582.98507
Liver cirrhosisChina1201140.003055940008760.001086172425795.67138216577e-056624.812
Crohns diseaseSpain17660.01216069855370.001248676336110.000107608810705217.69231
Type II diabetesDenmark752770.003414704140540.001264082752570.00012975544274872.57353
ObesityDenmark1691230.001605295889190.0007608558641750.0352649787756155.66038
Type II diabetesSweden53920.002687852240980.002098524602890.168623769976224.8
Ulcerative colitisSpain78660.002226754668430.001248676336110.18686354354211140.2174
Rheumatoid arthritisChina127980.001127803399940.00248498918040.33364428679214151.6483
Colorectal cancerAustria64350.002082769579550.0006818142145610.8407987738222687.2587
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Citation:

Nayfach S, Fischbach MA, Pollard KS. MetaQuery: a web server for rapid annotation and quantitative analysis of specific genes in the human gut microbiome. Bioinformatics 2015;31(14). doi:10.1093/bioinformatics/btv382