MetaQuery: quantitative analysis of the human gut microbiome

Results

Estimated abundances and results from statistical analyses

Job details:

Query type: taxa
Database: metaphlan2
Level: species
Name: Clostridium_citroniae
Description: None

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The abundance of Clostridium_citroniae across gut microbiome samples:





The prevalence of Clostridium_citroniae across gut microbiome samples:





Association of Clostridium_citroniae abundance with clinical phenotypes:

Boxplots:


Statistics:

pheno country case_n ctrl_n case_mean ctrl_mean p_value rank percentile
Crohns diseaseSpain17660.0003964755332358.28291067571e-052.7087594233e-05114.0293
Type II diabetesChina1831850.0003670897466770.0002234491432480.000404781128559176.34328
Ulcerative colitisSpain78660.0001574181014878.28291067571e-050.02679724062334717.029
Type II diabetesDenmark752770.0001712148900458.1540576338e-050.03469490113284516.5441
ObesityDenmark1691236.7235695486e-050.0001014256246260.0439067606815238.67924
Type II diabetesSweden53929.24178000633e-057.61436809256e-050.0471212621506208.0
Liver cirrhosisChina1201140.0001639228127810.0001084067109520.26098183863519774.0602
Rheumatoid arthritisChina127980.0001799520928170.000372715806580.43327199454516359.707
Colorectal cancerAustria64350.0001459965609587.35527524502e-050.57559853197716664.0927
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Citation:

Nayfach S, Fischbach MA, Pollard KS. MetaQuery: a web server for rapid annotation and quantitative analysis of specific genes in the human gut microbiome. Bioinformatics 2015;31(14). doi:10.1093/bioinformatics/btv382