MetaQuery: quantitative analysis of the human gut microbiome

Results

Estimated abundances and results from statistical analyses

Job details:

Query type: taxa
Database: metaphlan2
Level: species
Name: Clostridium_clostridioforme
Description: None

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The abundance of Clostridium_clostridioforme across gut microbiome samples:





The prevalence of Clostridium_clostridioforme across gut microbiome samples:





Association of Clostridium_clostridioforme abundance with clinical phenotypes:

Boxplots:


Statistics:

pheno country case_n ctrl_n case_mean ctrl_mean p_value rank percentile
Crohns diseaseSpain17660.01206985755260.0006703336235161.88878441234e-0810.3663
Type II diabetesDenmark752770.001741769084750.0001876940645170.01921794266113412.5
Type II diabetesChina1831850.001628654746310.0007539077868710.0211836657974516.791
Type II diabetesSweden53920.001165174392960.0001668696217880.0593968868651228.8
Liver cirrhosisChina1201140.001042761654455.32733831736e-050.087763124021516060.1504
Ulcerative colitisSpain78660.0002151381313180.0006703336235160.73228877191323284.058
Colorectal cancerAustria64350.002461451724323.19471823974e-050.75481021470720980.695
ObesityDenmark1691230.0002520614435079.32213194457e-050.82081994635323689.0566
Rheumatoid arthritisChina127980.000892174537960.0003830076724790.89389622401225091.5751
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Citation:

Nayfach S, Fischbach MA, Pollard KS. MetaQuery: a web server for rapid annotation and quantitative analysis of specific genes in the human gut microbiome. Bioinformatics 2015;31(14). doi:10.1093/bioinformatics/btv382