MetaQuery: quantitative analysis of the human gut microbiome

Results

Estimated abundances and results from statistical analyses

Job details:

Query type: taxa
Database: metaphlan2
Level: species
Name: Clostridium_hathewayi
Description: None

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The abundance of Clostridium_hathewayi across gut microbiome samples:





The prevalence of Clostridium_hathewayi across gut microbiome samples:





Association of Clostridium_hathewayi abundance with clinical phenotypes:

Boxplots:


Statistics:

pheno country case_n ctrl_n case_mean ctrl_mean p_value rank percentile
Liver cirrhosisChina1201140.001027678673460.0002672504426746.66841576519e-10259.3985
Type II diabetesChina1831850.002135701081650.0007500923464441.92716363174e-0562.23881
Type II diabetesDenmark752770.0008682233976050.0002044815993370.00154103095425155.51471
Crohns diseaseSpain17660.001135373305670.0001119004199550.003694200632435319.4139
Rheumatoid arthritisChina127980.0005588039718580.000697769688290.1367070735279032.967
Colorectal cancerAustria64350.0005441941738680.00064661752850.1794280895076625.4826
Ulcerative colitisSpain78660.0006178648797570.0001119004199550.35948492177315556.1594
Type II diabetesSweden53920.0002641552269790.0002672816149450.7829795879421284.8
ObesityDenmark1691230.0001503174425770.0002807138829620.96722556549325997.7358
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Citation:

Nayfach S, Fischbach MA, Pollard KS. MetaQuery: a web server for rapid annotation and quantitative analysis of specific genes in the human gut microbiome. Bioinformatics 2015;31(14). doi:10.1093/bioinformatics/btv382