MetaQuery: quantitative analysis of the human gut microbiome

Results

Estimated abundances and results from statistical analyses

Job details:

Query type: taxa
Database: metaphlan2
Level: species
Name: Clostridium_leptum
Description: None

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The abundance of Clostridium_leptum across gut microbiome samples:





The prevalence of Clostridium_leptum across gut microbiome samples:





Association of Clostridium_leptum abundance with clinical phenotypes:

Boxplots:


Statistics:

pheno country case_n ctrl_n case_mean ctrl_mean p_value rank percentile
Liver cirrhosisChina1201141.56500980286e-050.0001942883646970.0008495672138728732.7068
Type II diabetesDenmark752770.0009375050688130.0005974358023810.02097090593813613.2353
Type II diabetesChina1831850.0004427253424380.0005014599297460.0398117947555520.5224
Crohns diseaseSpain17660.0008886528865990.0007701710551610.05020640551438631.5018
Rheumatoid arthritisChina127980.0004998361246760.0002888541833030.1005768300566824.9084
ObesityDenmark1691230.0007227568964370.0004114104793970.1250265089094617.3585
Type II diabetesSweden53920.00180937908180.002768030326010.29253640259510240.8
Ulcerative colitisSpain78660.001159510127450.0007701710551610.30307069936514251.4493
Colorectal cancerAustria64350.0008764154948660.001259732845240.997069700347259100.0
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Citation:

Nayfach S, Fischbach MA, Pollard KS. MetaQuery: a web server for rapid annotation and quantitative analysis of specific genes in the human gut microbiome. Bioinformatics 2015;31(14). doi:10.1093/bioinformatics/btv382