MetaQuery: quantitative analysis of the human gut microbiome

Results

Estimated abundances and results from statistical analyses

Job details:

Query type: taxa
Database: metaphlan2
Level: species
Name: Clostridium_nexile
Description: None

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The abundance of Clostridium_nexile across gut microbiome samples:





The prevalence of Clostridium_nexile across gut microbiome samples:





Association of Clostridium_nexile abundance with clinical phenotypes:

Boxplots:


Statistics:

pheno country case_n ctrl_n case_mean ctrl_mean p_value rank percentile
Liver cirrhosisChina1201140.006713944497040.002244888801955.01005367796e-074115.4135
Colorectal cancerAustria64350.002586840348059.54295651485e-060.00839210250199103.861
Rheumatoid arthritisChina127980.004314719349820.001785963252610.03361002513773613.1868
Crohns diseaseSpain17660.005385126780620.0003956181674590.04855417519828531.1355
ObesityDenmark1691230.0005240620016517.05097896867e-050.09790303505333914.717
Type II diabetesDenmark752774.69088277173e-050.000339542618220.162951401089133.4559
Type II diabetesSweden53920.0004652432718580.0003300833597620.2310880018298433.6
Ulcerative colitisSpain78660.001299801894780.0003956181674590.34706974851714753.2609
Type II diabetesChina1831850.002563520700140.002917294926590.49363733765618569.0299
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Citation:

Nayfach S, Fischbach MA, Pollard KS. MetaQuery: a web server for rapid annotation and quantitative analysis of specific genes in the human gut microbiome. Bioinformatics 2015;31(14). doi:10.1093/bioinformatics/btv382