MetaQuery: quantitative analysis of the human gut microbiome

Results

Estimated abundances and results from statistical analyses

Job details:

Query type: taxa
Database: metaphlan2
Level: species
Name: Clostridium_perfringens
Description: None

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The abundance of Clostridium_perfringens across gut microbiome samples:





The prevalence of Clostridium_perfringens across gut microbiome samples:





Association of Clostridium_perfringens abundance with clinical phenotypes:

Boxplots:


Statistics:

pheno country case_n ctrl_n case_mean ctrl_mean p_value rank percentile
Liver cirrhosisChina1201140.001835301481436.65079520998e-051.18594294214e-064316.1654
Ulcerative colitisSpain78665.6709405134e-058.34192233597e-060.01678433882923914.1304
Type II diabetesSweden53920.07.59960462373e-060.1783834063126726.6
Rheumatoid arthritisChina127980.0002228166312910.0005652239211140.23263843458711943.5897
Crohns diseaseSpain17667.26890102309e-068.34192233597e-060.4584582888119370.696
ObesityDenmark1691235.77448961446e-063.31714325951e-050.50950270636115959.8113
Colorectal cancerAustria64356.15094478106e-050.0003072260166030.59314958826317065.6371
Type II diabetesChina1831850.0001526073511380.0001749413195490.69744768080821479.8507
Type II diabetesDenmark752778.24623911898e-063.58209654759e-060.80764400432125091.7279
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Citation:

Nayfach S, Fischbach MA, Pollard KS. MetaQuery: a web server for rapid annotation and quantitative analysis of specific genes in the human gut microbiome. Bioinformatics 2015;31(14). doi:10.1093/bioinformatics/btv382