MetaQuery: quantitative analysis of the human gut microbiome

Results

Estimated abundances and results from statistical analyses

Job details:

Query type: taxa
Database: metaphlan2
Level: species
Name: Clostridium_ramosum
Description: None

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The abundance of Clostridium_ramosum across gut microbiome samples:





The prevalence of Clostridium_ramosum across gut microbiome samples:





Association of Clostridium_ramosum abundance with clinical phenotypes:

Boxplots:


Statistics:

pheno country case_n ctrl_n case_mean ctrl_mean p_value rank percentile
Liver cirrhosisChina1201140.0002694607653745.47118443355e-051.41093177489e-064416.5414
Crohns diseaseSpain17660.0005796237931970.0001359094242811.70708464596e-0641.4652
Type II diabetesChina1831850.00048854206670.0001268975083860.000364378864175165.97015
Type II diabetesSweden53920.0002028162581067.42534091008e-050.06802072416052811.2
ObesityDenmark1691235.33891369726e-062.9528759985e-050.1152437421154316.2264
Type II diabetesDenmark752777.21806528191e-051.46704308324e-050.1513740604429033.0882
Ulcerative colitisSpain78660.0001239061100210.0001359094242810.36452670978615756.8841
Colorectal cancerAustria64350.0002195062377240.0002157745926550.77448732298221281.8533
Rheumatoid arthritisChina127980.000240835823320.0001378575343630.78655468752423586.0806
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Citation:

Nayfach S, Fischbach MA, Pollard KS. MetaQuery: a web server for rapid annotation and quantitative analysis of specific genes in the human gut microbiome. Bioinformatics 2015;31(14). doi:10.1093/bioinformatics/btv382