MetaQuery: quantitative analysis of the human gut microbiome

Results

Estimated abundances and results from statistical analyses

Job details:

Query type: taxa
Database: metaphlan2
Level: species
Name: Clostridium_sp_ATCC_BAA_442
Description: None

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The abundance of Clostridium_sp_ATCC_BAA_442 across gut microbiome samples:





The prevalence of Clostridium_sp_ATCC_BAA_442 across gut microbiome samples:





Association of Clostridium_sp_ATCC_BAA_442 abundance with clinical phenotypes:

Boxplots:


Statistics:

pheno country case_n ctrl_n case_mean ctrl_mean p_value rank percentile
Crohns diseaseSpain17660.0006576019065516.5877140803e-050.04670739326178330.4029
Liver cirrhosisChina1201140.001186371736590.0003800843103610.068584691589715357.5188
ObesityDenmark1691236.92493996155e-050.00.09465553562813713.7736
Ulcerative colitisSpain78660.0002010608398936.5877140803e-050.38475898862416459.4203
Type II diabetesDenmark752770.0001968640334514.10366812536e-050.47894282817765.0735
Rheumatoid arthritisChina127980.0003828592578140.0004027914200320.62469023591320675.4579
Type II diabetesChina1831850.0004506076678210.000485573971040.98831340791226799.6269
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Citation:

Nayfach S, Fischbach MA, Pollard KS. MetaQuery: a web server for rapid annotation and quantitative analysis of specific genes in the human gut microbiome. Bioinformatics 2015;31(14). doi:10.1093/bioinformatics/btv382