MetaQuery: quantitative analysis of the human gut microbiome

Results

Estimated abundances and results from statistical analyses

Job details:

Query type: taxa
Database: metaphlan2
Level: species
Name: Clostridium_sp_KLE_1755
Description: None

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The abundance of Clostridium_sp_KLE_1755 across gut microbiome samples:





The prevalence of Clostridium_sp_KLE_1755 across gut microbiome samples:





Association of Clostridium_sp_KLE_1755 abundance with clinical phenotypes:

Boxplots:


Statistics:

pheno country case_n ctrl_n case_mean ctrl_mean p_value rank percentile
Colorectal cancerAustria64350.0002862150054780.00.199969840467328.1853
Ulcerative colitisSpain78660.0006318893783880.0001763524341750.2105178475811642.029
ObesityDenmark1691230.0001694377444832.43867385986e-050.33529263071610640.0
Crohns diseaseSpain17664.2701803989e-050.0001763524341750.61288513870322883.3333
Type II diabetesSweden53920.0001067935518040.0001857257177640.73382585906320481.4
Type II diabetesDenmark752777.131007452e-050.0001104332114880.76156199692924389.3382
Rheumatoid arthritisChina127988.47223175063e-050.000419162918950.85384134487224589.5604
Type II diabetesChina1831859.97150091244e-050.0001251502512460.9519571065126097.0149
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Citation:

Nayfach S, Fischbach MA, Pollard KS. MetaQuery: a web server for rapid annotation and quantitative analysis of specific genes in the human gut microbiome. Bioinformatics 2015;31(14). doi:10.1093/bioinformatics/btv382