MetaQuery: quantitative analysis of the human gut microbiome

Results

Estimated abundances and results from statistical analyses

Job details:

Query type: taxa
Database: metaphlan2
Level: species
Name: Clostridium_sp_L2_50
Description: None

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The abundance of Clostridium_sp_L2_50 across gut microbiome samples:





The prevalence of Clostridium_sp_L2_50 across gut microbiome samples:





Association of Clostridium_sp_L2_50 abundance with clinical phenotypes:

Boxplots:


Statistics:

pheno country case_n ctrl_n case_mean ctrl_mean p_value rank percentile
Liver cirrhosisChina1201147.8709511096e-050.002784194302940.0087524271422710940.9774
Crohns diseaseSpain17660.0009558480949560.0059478036060.12144217189212043.956
ObesityDenmark1691230.004203105659990.006877544199810.1716234613266223.3962
Colorectal cancerAustria64350.003454835256410.003625535334810.41048791153912347.4903
Type II diabetesChina1831850.002446091712290.002317728844550.42741742233617464.9254
Type II diabetesSweden53920.006891702002710.006930657486540.74851830135320782.8
Type II diabetesDenmark752770.004882461207580.005318164117690.7817852251124891.1765
Ulcerative colitisSpain78660.0084601525630.0059478036060.81511456876324287.6812
Rheumatoid arthritisChina127980.002144376037960.003268717865370.8422319637624288.6447
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Citation:

Nayfach S, Fischbach MA, Pollard KS. MetaQuery: a web server for rapid annotation and quantitative analysis of specific genes in the human gut microbiome. Bioinformatics 2015;31(14). doi:10.1093/bioinformatics/btv382