MetaQuery: quantitative analysis of the human gut microbiome

Results

Estimated abundances and results from statistical analyses

Job details:

Query type: taxa
Database: metaphlan2
Level: species
Name: Clostridium_spiroforme
Description: None

Click here to download results

The abundance of Clostridium_spiroforme across gut microbiome samples:





The prevalence of Clostridium_spiroforme across gut microbiome samples:





Association of Clostridium_spiroforme abundance with clinical phenotypes:

Boxplots:


Statistics:

pheno country case_n ctrl_n case_mean ctrl_mean p_value rank percentile
Rheumatoid arthritisChina127980.0001934565251350.00.1277340344958430.5861
Type II diabetesChina1831856.88973416048e-050.00.29662239195214453.7313
Crohns diseaseSpain17660.00.0002729315779870.30842346387416961.7216
Type II diabetesDenmark752770.03.6436082491e-050.3620546840614653.6765
Colorectal cancerAustria64350.0003090211971490.0002063824389110.48142903038114355.0193
Ulcerative colitisSpain78665.48889710873e-050.0002729315779870.79270828518323886.2319
ObesityDenmark1691232.77932051192e-054.85660311127e-050.79752417218122886.0377
Type II diabetesSweden53920.0002446251872470.0004130178893990.83110595882822389.2
Click on arrows to sort table data. Shift+click to sort by multiple columns.

Citation:

Nayfach S, Fischbach MA, Pollard KS. MetaQuery: a web server for rapid annotation and quantitative analysis of specific genes in the human gut microbiome. Bioinformatics 2015;31(14). doi:10.1093/bioinformatics/btv382