MetaQuery: quantitative analysis of the human gut microbiome

Results

Estimated abundances and results from statistical analyses

Job details:

Query type: taxa
Database: metaphlan2
Level: species
Name: Clostridium_symbiosum
Description: None

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The abundance of Clostridium_symbiosum across gut microbiome samples:





The prevalence of Clostridium_symbiosum across gut microbiome samples:





Association of Clostridium_symbiosum abundance with clinical phenotypes:

Boxplots:


Statistics:

pheno country case_n ctrl_n case_mean ctrl_mean p_value rank percentile
Liver cirrhosisChina1201140.001038887646220.000223993010563.70043529505e-093212.0301
Crohns diseaseSpain17660.002912413394190.0003188502488890.0002762658896392910.6227
Type II diabetesDenmark752770.0001771714922160.0001509176759540.00190141224125165.88235
Type II diabetesChina1831850.001306589105410.0008059198137170.007660412830333412.6866
Rheumatoid arthritisChina127980.0002495859220270.0003230832054650.03567535938463813.9194
Type II diabetesSweden53920.0002839883901440.0001806657269620.2644108539499236.8
ObesityDenmark1691230.0001146551013730.0002018284350240.38438923864311543.3962
Ulcerative colitisSpain78660.000349226926710.0003188502488890.5038499795219169.2029
Colorectal cancerAustria64350.0008321521118880.001487549945250.62209222472617467.1815
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Citation:

Nayfach S, Fischbach MA, Pollard KS. MetaQuery: a web server for rapid annotation and quantitative analysis of specific genes in the human gut microbiome. Bioinformatics 2015;31(14). doi:10.1093/bioinformatics/btv382