MetaQuery: quantitative analysis of the human gut microbiome

Results

Estimated abundances and results from statistical analyses

Job details:

Query type: taxa
Database: metaphlan2
Level: taxon
Name: Clostridium_clostridioforme_unclassified
Description: None

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The abundance of Clostridium_clostridioforme_unclassified across gut microbiome samples:





The prevalence of Clostridium_clostridioforme_unclassified across gut microbiome samples:





Association of Clostridium_clostridioforme_unclassified abundance with clinical phenotypes:

Boxplots:


Statistics:

pheno country case_n ctrl_n case_mean ctrl_mean p_value rank percentile
Crohns diseaseSpain17660.00829479605090.0006703336235163.58079291336e-0720.766284
Type II diabetesChina1831850.001584251725490.0005506666662990.01885701306923915.415
Type II diabetesDenmark752770.001553913716230.0001715217990310.03510150972123613.8462
Type II diabetesSweden53920.001165174392960.0001668696217880.0593968868651208.54701
Liver cirrhosisChina1201140.0002479547853935.32733831736e-050.12675742944116165.1822
Ulcerative colitisSpain78660.0001891855283380.0006703336235160.70670071730721882.8897
ObesityDenmark1691230.0002443273164066.50316676892e-050.73288378354420279.5276
Colorectal cancerAustria64350.001297759804773.19471823974e-050.75481021470719680.6584
Rheumatoid arthritisChina127980.0008845084102780.000352375993660.97523327032225799.2278
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Citation:

Nayfach S, Fischbach MA, Pollard KS. MetaQuery: a web server for rapid annotation and quantitative analysis of specific genes in the human gut microbiome. Bioinformatics 2015;31(14). doi:10.1093/bioinformatics/btv382